BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	5,157,352	C→T	intergenic (+178/+65)	RPPX_22875 → / ← dnaE2	integrase/DNA polymerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	5,157,352	0	C	T	99.4%	1280.0 / ‑5.4	342	intergenic (+178/+65)	RPPX_22875/dnaE2	integrase/DNA polymerase
Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (184/156); total (185/157)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 346 total aligned reads displayed.

GGGGGGCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGCCGCA  >  CP009974/5157204‑5157499

ggggggCTCAGGGCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTAGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAAtgc                                                                                                                                                   <  2:4318598/151‑1 (MQ=255)

  ggggCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCgg                                                                                                                                                 >  1:2272198/1‑151 (MQ=255)

   gggCTCGCGCGTAGTGGGAAACGTGGCTGTCAACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGt                                                                                                                                                <  2:4918388/151‑1 (MQ=38)

   gggCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGt                                                                                                                                                >  2:3299928/1‑151 (MQ=255)

         aGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGgctgc                                                                                                                                          >  2:697810/1‑151 (MQ=255)

         aGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGgctgc                                                                                                                                          >  2:891002/1‑151 (MQ=255)

             cTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcg                                                                                                                                      >  1:1586107/1‑151 (MQ=255)

             cTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcg                                                                                                                                      <  1:4422253/151‑1 (MQ=255)

             cTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcg                                                                                                                                      >  1:1416532/1‑151 (MQ=255)

             cTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTCGCTGCTTcc                                                                                                                                      >  2:5466495/1‑150 (MQ=255)

              tAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgc                                                                                                                                     >  1:4691880/1‑151 (MQ=255)

               aGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgcg                                                                                                                                    >  2:1203231/1‑151 (MQ=255)

               aGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgcg                                                                                                                                    >  2:4488698/1‑151 (MQ=255)

                  ggCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGc                                                                                                                                 <  1:6797969/151‑1 (MQ=255)

                   gCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCt                                                                                                                                <  1:5106848/151‑1 (MQ=255)

                    aaaaCGTGGCTGTCGACCAAGGTATATCGCACCGTGGGCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTc                                                                                                                               <  1:1875535/150‑1 (MQ=255)

                       aCGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGcc                                                                                                                            >  1:5492426/1‑151 (MQ=255)

                        cGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGccc                                                                                                                           <  1:2571806/151‑1 (MQ=255)

                           ggCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCt                                                                                                                        >  1:1475617/1‑151 (MQ=255)

                              tGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTccc                                                                                                                     <  1:7039763/151‑1 (MQ=255)

                              tGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTccc                                                                                                                     <  1:1066813/151‑1 (MQ=255)

                                    ccAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAggg                                                                                                               <  1:2681965/151‑1 (MQ=255)

                                     cAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGa                                                                                                              >  1:3409686/1‑151 (MQ=255)

                                      gaGGTATCACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGaa                                                                                                             <  1:4789677/150‑1 (MQ=255)

                                      aaGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGaa                                                                                                             >  1:4180419/1‑151 (MQ=255)

                                         gTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcg                                                                                                          <  1:3121464/151‑1 (MQ=255)

                                           ataACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcgcg                                                                                                        <  1:632036/151‑1 (MQ=255)

                                            taACGCACCGGGGCCGATGAATGGTGGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCgcgc                                                                                                       <  2:7111866/151‑1 (MQ=255)

                                             aaCGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGCACACCGGCAAGGCCGGTGCCCTGCATTGCGGTGGCTCCTTCGCGGGCTCGCCCGCTCCCACACGGCACCgcgcc                                                                                                      >  2:3671940/1‑150 (MQ=25)

                                              aCGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCaa                                                                                                     <  2:5721323/151‑1 (MQ=255)

                                              aCGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCaa                                                                                                     >  1:4360140/1‑151 (MQ=255)

                                                gCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGCACCGCGCAAGt                                                                                                   >  2:2858684/1‑151 (MQ=255)

                                                gCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGt                                                                                                   >  1:3484522/1‑151 (MQ=255)

                                                gCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGt                                                                                                   >  2:3431876/1‑151 (MQ=255)

                                                 cACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCGATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGtt                                                                                                  <  1:981823/151‑1 (MQ=255)

                                                 cACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGtt                                                                                                  <  1:3769656/151‑1 (MQ=255)

                                                  aCCGTGGCTGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTAGGCCGCTCCCACAGGGAACCGCGCAAGTTc                                                                                                 <  2:459486/151‑1 (MQ=255)

                                                  aCCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGgctgct                                                                                                                                         >  2:3046203/1‑111 (MQ=255)

                                                  aCCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTc                                                                                                 >  1:5895893/1‑151 (MQ=255)

                                                  aCCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTc                                                                                                 >  2:2610747/1‑151 (MQ=255)

                                                   ccGGGGCCGATGAATGGTTGGGGCAGGGTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCGGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTcc                                                                                                <  2:1458572/151‑1 (MQ=255)

                                                    cGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCCCAAGGTCCg                                                                                               >  2:5112410/1‑151 (MQ=255)

                                                     gTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGa                                                                                              <  1:2444756/151‑1 (MQ=255)

                                                      tGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAg                                                                                             >  2:6823627/1‑151 (MQ=255)

                                                      tGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAg                                                                                             >  2:2289608/1‑151 (MQ=255)

                                                       ggCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCCCCCACAGGGAACCGCGCAAGTTCCGAGc                                                                                            >  2:2644183/1‑151 (MQ=255)

                                                       ggCCGACGGGTGGGTGGGGCAGGCTCAAGGCTGCAGGCGGGAAATGTGGGAGCGGGCATGCCCGCGAACACCGGCGAGGGCGGTGCCCTGAAATGCGGTGGCTGCTTCGAGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGc                                                                                            <  2:189100/151‑1 (MQ=18)

                                                        gCCGATGAATGGTTGGGGCAGGCTCAAGGCGGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGCAACCGCGCAAGTTCCCAGcc                                                                                           >  2:2474732/1‑150 (MQ=255)

                                                         ccGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGt                                                                                          <  2:6237885/151‑1 (MQ=255)

                                                         ccGATGAATGGTTGGGGCAGGCTCAAGGCGGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGt                                                                                          <  2:5634954/151‑1 (MQ=255)

                                                           gATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTg                                                                                        >  1:6012447/1‑151 (MQ=255)

                                                                 tGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCa                                                                                  <  1:1702910/151‑1 (MQ=255)

                                                                  ggTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAg                                                                                 <  1:2794460/151‑1 (MQ=255)

                                                                    ttGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTg                                                                               >  2:4076527/1‑151 (MQ=255)

                                                                     tGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTgg                                                                              >  1:766052/1‑151 (MQ=255)

                                                                     tGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTgg                                                                              <  2:4881329/151‑1 (MQ=255)

                                                                      ggggCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGa                                                                             >  2:2151525/1‑151 (MQ=255)

                                                                       gggCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGaa                                                                            <  1:2175192/151‑1 (MQ=255)

                                                                        ggCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGaaa                                                                           <  1:659555/151‑1 (MQ=255)

                                                                         gCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTccc                                                                                                                     <  1:5589691/108‑1 (MQ=255)

                                                                            ggCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTc                                                                                                 >  2:1604750/1‑125 (MQ=255)

                                                                             gCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCg                                                                      <  2:4969224/151‑1 (MQ=255)

                                                                              cTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCgg                                                                     >  2:4368218/1‑151 (MQ=255)

                                                                              cTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCgg                                                                     <  1:6943389/151‑1 (MQ=255)

                                                                               tCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGc                                                                    <  1:5327548/151‑1 (MQ=255)

                                                                                cAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCt                                                                   >  1:6455613/1‑151 (MQ=255)

                                                                                   ggCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCg                                                                <  2:5959665/151‑1 (MQ=255)

                                                                                    gCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCgg                                                               >  2:2024975/1‑150 (MQ=255)

                                                                                       gcgggCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACa                                                            <  1:4153513/148‑1 (MQ=255)

                                                                                       gCAGGCGGTCGAGGTGGGAGCGGGCATGCGCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACa                                                            <  2:5198853/151‑1 (MQ=255)

                                                                                           gCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCa                                                        <  1:1491421/151‑1 (MQ=255)

                                                                                            gggTCAATGTGGGCGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAg                                                       <  2:1304381/150‑1 (MQ=255)

                                                                                              gTCAATGTGGGAGCGGGCATGCCCGCGACCACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGcc                                                     <  1:5151822/151‑1 (MQ=255)

                                                                                                   tgtgGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTgc                                                <  2:1725159/151‑1 (MQ=255)

                                                                                                         aGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCagcagc                                          >  1:3951415/1‑151 (MQ=255)

                                                                                                           cGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCgg                                        >  1:3872264/1‑151 (MQ=255)

                                                                                                            gggCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGa                                       >  1:3543481/1‑151 (MQ=255)

                                                                                                            gggCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGCGGAAATCCCGGCTGCGTCCACCCAGCCCTTGCCGCAGCggc                                       >  1:2059783/1‑150 (MQ=21)

                                                                                                             ggCAGGCCCGCGAACACCGGCGAGGCCGTTGCCCTCCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGAc                                      <  2:6872163/151‑1 (MQ=25)

                                                                                                              gCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACt                                     >  1:2344355/1‑151 (MQ=255)

                                                                                                                     cgcgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcc                              >  2:3883010/1‑151 (MQ=255)

                                                                                                                      gcgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAgcct                             >  1:1930016/1‑151 (MQ=255)

                                                                                                                      gcgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCACTTGCAGCAGCGGCCTCACAtccc                             >  2:5815326/1‑150 (MQ=255)

                                                                                                                       cgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctc                            <  1:4872335/151‑1 (MQ=255)

                                                                                                                         aaCACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctccc                          >  1:1765498/1‑150 (MQ=255)

                                                                                                                         aaCACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCa                          <  2:1416532/151‑1 (MQ=255)

                                                                                                                          ccacCGGCAAGGCCGGTGCCCGGCAATGCGGTGGCTGCTGCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCaa                         <  2:6562394/150‑1 (MQ=255)

                                                                                                                          acacCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCaa                         <  1:6143442/151‑1 (MQ=255)

                                                                                                                            cccGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAcc                       <  2:6285399/150‑1 (MQ=255)

                                                                                                                              cGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgc                     >  2:1633007/1‑151 (MQ=255)

                                                                                                                              cGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgc                     >  2:63914/1‑151 (MQ=255)

                                                                                                                                  aaGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCCCCAACcgccgcc                 >  2:2375076/1‑150 (MQ=255)

                                                                                                                                   aGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCgcgc                <  1:1322241/151‑1 (MQ=255)

                                                                                                                                     gCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCaa              >  1:5702750/1‑151 (MQ=255)

                                                                                                                                        ggTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCa           <  1:1632466/151‑1 (MQ=255)

                                                                                                                                         gTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAg          >  1:3243199/1‑151 (MQ=255)

                                                                                                                                           gCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGt        <  2:6006127/151‑1 (MQ=255)

                                                                                                                                             ccTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGc      >  1:4983319/1‑151 (MQ=255)

                                                                                                                                              cTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGcc     <  1:4582564/151‑1 (MQ=255)

                                                                                                                                                gCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGCCGc   <  2:942763/151‑1 (MQ=255)

GGGGGGCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGCCGCA  >  CP009974/5157204‑5157499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`