| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,426,639 | T→C | V332V (GTA→GTG) | RPPX_24160 ← | damage‑inducible protein CinA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,426,639 | 0 | T | C | 99.6% | 587.2 / ‑5.0 | 244 | V332V (GTA→GTG) | RPPX_24160 | damage‑inducible protein CinA |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (118/124); total (118/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
Only 100 of 256 total aligned reads displayed.
GAACCGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACTACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGCCCGAA > CP009974/5426491‑5426786 | gAACCGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGACCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACGGCACGAAGGTCAGCGGCATGCTGGTCCGCGCcaccac > 2:5685022/1‑151 (MQ=255) aaCCGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCaccacc < 1:6429164/151‑1 (MQ=255) aCCGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGccaccacca < 1:4338527/151‑1 (MQ=255) cGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGc < 2:6532946/151‑1 (MQ=255) gCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCgg > 2:877268/1‑151 (MQ=255) gCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCgg < 1:3880957/151‑1 (MQ=255) cTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCggg > 1:7047867/1‑151 (MQ=255) cTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCggg < 1:3964266/151‑1 (MQ=255) tGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGa < 2:7235090/151‑1 (MQ=255) ccAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAAcc > 1:5365723/1‑151 (MQ=38) cAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCa < 1:1103044/151‑1 (MQ=37) cAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCa > 2:2748713/1‑151 (MQ=37) cAAGCACCGAAGAGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCa < 1:3112950/151‑1 (MQ=25) aaGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGCACCAg > 2:4430410/1‑151 (MQ=25) gCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTg > 1:6488417/1‑151 (MQ=25) aCCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGc > 2:4119307/1‑151 (MQ=21) aCCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGc > 2:6870233/1‑151 (MQ=25) ccGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCt > 2:5513915/1‑151 (MQ=21) cGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTc < 1:102550/151‑1 (MQ=21) cGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTc > 1:5116129/1‑151 (MQ=18) gAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTcc > 2:1571923/1‑151 (MQ=21) aaGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCa > 1:1968548/1‑151 (MQ=18) aGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCAc > 1:1256993/1‑151 (MQ=18) aGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCAc < 2:356993/151‑1 (MQ=18) cgcgGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGc < 2:4046123/151‑1 (MQ=14) cgGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAGCGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCtt < 2:3802469/151‑1 (MQ=14) gggCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCcaccac < 2:6645058/124‑1 (MQ=17) gggCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTc > 1:2355753/1‑151 (MQ=14) gggCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTc > 2:2461241/1‑151 (MQ=14) gCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCg > 1:476877/1‑151 (MQ=14) cAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACACCGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCgg < 2:2948079/151‑1 (MQ=14) cAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGCCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCgg > 2:549336/1‑151 (MQ=14) aaTTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGa < 2:1435675/151‑1 (MQ=11) ggaggcggTACGCGGCGGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAg < 2:6966820/144‑1 (MQ=0) ggacgcggcATTGGACAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCCGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAAt < 2:2547370/148‑1 (MQ=0) gagcGGCTCAAGGCCAAAGTAGTACCTGTCGGAGCACAGCACGAAGGTCAGCGGCACGCTGGTCGGCGCCACCGCTTACGGGCAGCAGTAGCGCCCCGCTTCCGAGAACCAGCCCACCCGCATCTGGGACAATGCATGGGACATCTTGGTa < 2:1327109/148‑1 (MQ=0) acaACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCgaga < 1:2736590/151‑1 (MQ=14) caACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGaa > 2:7188246/1‑151 (MQ=14) aCGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGaaaa < 1:2852621/151‑1 (MQ=14) gCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATa > 2:3097116/1‑151 (MQ=14) gCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATa < 1:1611076/151‑1 (MQ=17) cAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATAcc < 1:7211064/151‑1 (MQ=17) aaGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCgg > 2:5219091/1‑151 (MQ=14) agtagtACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGc > 1:839863/1‑151 (MQ=17) agtagtACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCAACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGc < 2:4549351/151‑1 (MQ=17) gtagtaCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCa > 1:2132416/1‑151 (MQ=14) tagtaCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCaa < 2:5126511/151‑1 (MQ=17) agtaCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCaaa < 2:2119059/151‑1 (MQ=17) agtaCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCaaa < 1:3594467/151‑1 (MQ=17) gtaCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAg < 1:2974450/151‑1 (MQ=17) gtaCGCGACGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAg < 2:4469094/151‑1 (MQ=17) aCGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGAt < 1:6277002/151‑1 (MQ=17) cgcgTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATg > 2:1053155/1‑151 (MQ=14) gtcgtTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGccc > 1:5964850/1‑151 (MQ=17) gtcgtTGGACAGCACGAAGGGCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGccc < 2:6696649/151‑1 (MQ=17) ttgtTGGGCAGGAGGAAGGTCAGCGGCATGCTGGTCAGCGCCAGCACCAGCGGGAACCAGTGGCTCCACGCTGGCGGAATCCAGTCCACCAGCGTCTGGGCCGATGCATCGACCATCTTGGTGCCCGAGAAAATTCCGGCAGAGATGCCcg < 2:4826678/149‑1 (MQ=11) gtTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCcgcg < 1:637937/151‑1 (MQ=17) ttGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACGAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcgg > 2:6919478/1‑151 (MQ=17) ttGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcgg < 2:1130146/151‑1 (MQ=17) tGGACAGCACGAAGGTCAGCGGCCTGCTGGTCAGCGCCCCCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCACTCCACCAGCGTCTCGGCCAATGCATCGCCCATCTTCCTACCCGAGTAAATACCGGCAAAGATGCCcgcgcc > 2:219150/1‑149 (MQ=11) tGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggc > 1:5309575/1‑151 (MQ=17) tGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggc < 2:6780056/151‑1 (MQ=17) tGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggc < 1:805292/151‑1 (MQ=17) tGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggc < 1:4986156/151‑1 (MQ=17) tGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggc > 1:4036000/1‑151 (MQ=17) ggACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCgcggcg > 2:4764038/1‑151 (MQ=14) aGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGCAAATACCGGCCAAGATGCCCGCGCCCAacc > 2:1838330/1‑150 (MQ=11) aGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAaca > 1:1858516/1‑151 (MQ=17) aCGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGCACACca > 2:6039247/1‑151 (MQ=17) tgAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACcag > 2:4626470/2‑151 (MQ=14) cGAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACcag > 1:5915698/1‑151 (MQ=14) gAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACcagc < 2:4255987/151‑1 (MQ=17) gAAGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACcagc > 1:4575639/1‑151 (MQ=17) aaGGTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCCAAGATGCCCGCGGCGAACACcagcc > 2:1941428/1‑150 (MQ=9) ggTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCagcagc > 2:4372281/1‑151 (MQ=14) gTCAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAgcagca > 1:3791861/1‑151 (MQ=17) cAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGcacc > 2:1604448/1‑151 (MQ=17) cAGCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAAAACCAGCAGcacc > 1:3541940/1‑151 (MQ=17) gCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGcaccac < 2:5861326/151‑1 (MQ=17) gCGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGcaccac < 2:3717742/151‑1 (MQ=17) cGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACg < 1:6674293/151‑1 (MQ=18) cGGCATGCTGGTCAGCGCCACCACCAGCGGGAACCACTGGCTCCACGCTCCCGGAATCCAGTCCACCAGCCTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACg < 2:1678957/151‑1 (MQ=255) ggCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACgg > 1:3426076/1‑151 (MQ=18) gCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGt > 1:2365955/1‑151 (MQ=21) gCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGt < 1:5019259/151‑1 (MQ=21) gCATGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGt < 1:559796/151‑1 (MQ=21) aTGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCa < 2:6245762/151‑1 (MQ=21) aTGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCa > 2:2431858/1‑151 (MQ=25) aTGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCa < 2:26381/151‑1 (MQ=21) aTGCTGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCa > 1:4704080/1‑151 (MQ=25) tGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCCCCACGGTCATGGc > 2:5349305/1‑151 (MQ=18) tGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGc < 1:3209800/151‑1 (MQ=25) tGGTCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGc > 2:3965726/1‑151 (MQ=21) gTCAGCGCCACCACCAGCGGGAACGAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGt < 2:6974818/151‑1 (MQ=21) tCAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGtt > 1:2786599/1‑151 (MQ=21) cAGCGCCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTg < 1:1215639/151‑1 (MQ=21) gcgcCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGcc > 1:4920353/1‑151 (MQ=18) cgcCACCACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGccc > 1:5105049/1‑151 (MQ=25) ccaccaccaGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGCCCGa > 2:5554766/1‑151 (MQ=25) ccaccaccaGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGCCCGa < 1:2033774/151‑1 (MQ=25) | GAACCGGCTGGCCAAGCACCGAAGCGCGGGCAATTTCCACCGGGTCGATGCCGTACGCGGCCGCGGCATTGGCCAGGATCGGCACAACGCCAAAGTAGTACGCGTCGTTGGACAGCACGAAGGTCAGCGGCATGCTGGTCAGCGCCACTACCAGCGGGAACCAGTGGCTCCACGCTTCCGGAATCCAGTCCACCAGCGTCTGGGCCAATGCATCGACCATCTTGGTACCCGAGAAAATACCGGCAAAGATGCCCGCGGCGAACACCAGCAGCACCACGGTCATGGCGTTGCCCGAA > CP009974/5426491‑5426786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |