| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,515,235 | A→G | intergenic (‑22/+120) | RPPX_24605 ← / ← RPPX_24610 | transposase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,515,235 | 0 | A | G | 98.5% | 879.4 / ‑0.6 | 264 | intergenic (‑22/+120) | RPPX_24605/RPPX_24610 | transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/2); new base G (135/122); total (139/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 264 total aligned reads displayed.
CAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515095‑5515382 | caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct > 2:1360173/4‑151 (MQ=1) aaaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAt > 2:52407/1‑151 (MQ=14) aaaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAt > 2:51318/1‑151 (MQ=14) aaaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAt > 1:2454763/1‑151 (MQ=14) aTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAttt > 1:1389227/1‑151 (MQ=17) aTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAttt > 1:4394036/1‑151 (MQ=17) aTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAttt > 2:452380/1‑151 (MQ=17) tCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTc > 1:2183674/1‑151 (MQ=18) cGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCa > 2:516252/1‑151 (MQ=18) aTACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAgg < 2:2127718/151‑1 (MQ=25) cTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCGAATTTCAGGATcc > 1:3874055/1‑151 (MQ=255) tAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCa < 2:3236647/151‑1 (MQ=255) acctgtTGAGCCACCTTTCGAAAACAGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGGATTGCTCGGTGTTCTTACCCATAGATCCCCCAAGGGTTGGATTGTTGTCCTCCTTCTTGGGGGCAGTCCAATTTCCGGATCCAc < 2:2175246/148‑1 (MQ=11) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc > 1:5889964/1‑151 (MQ=255) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc > 2:2150704/1‑151 (MQ=255) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc < 1:3523434/151‑1 (MQ=255) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc < 2:5052618/151‑1 (MQ=255) tgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCTGAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAc > 1:4267832/1‑151 (MQ=255) cgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGCCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACCTACCCATAGAACCCCCAAGAGTTGGATTCCTGTCCACCTTCTTTGGGGCAGCCCAATTTCACGATCCACgcc > 2:5200780/2‑149 (MQ=14) gtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAcc < 2:2377378/151‑1 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 1:6905524/151‑1 (MQ=255) aGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtg < 1:3365877/151‑1 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt < 2:5824596/151‑1 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt < 2:1221273/151‑1 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt > 1:6058876/1‑151 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt < 2:904745/151‑1 (MQ=255) cACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTgg < 2:2028477/151‑1 (MQ=255) aCCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 2:6528190/151‑1 (MQ=255) aCCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg > 2:7158232/1‑151 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa > 2:5865717/1‑151 (MQ=255) gttCGGAGACCGTTGCTGCCGTCAAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGCTCCCCCGAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGc < 2:1728694/150‑1 (MQ=17) ttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTGCCCATAGATCCCCCAACGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGCCCGATTTCAGGAGTCACGACCACTGAGAGAGCg > 2:5302092/1‑151 (MQ=14) ttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCg < 2:638799/151‑1 (MQ=255) ggAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGc > 2:6847420/1‑151 (MQ=255) ggAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGGGAGCTTGAATTGCTCGGGGTACTTGCCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCGTGGGGGCAGTCCAATTTCAGGAGCCACGACCCCCGTGCgggcgggc > 2:1058781/1‑151 (MQ=14) gAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCCGTGGGAGCGGGCg > 2:4174447/1‑151 (MQ=255) aaaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGa > 2:3663085/1‑151 (MQ=255) aaaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGa < 1:4865692/151‑1 (MQ=255) aaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGCGCGGGCgcg > 1:1844927/1‑149 (MQ=255) aaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAg > 1:6353792/1‑151 (MQ=255) aaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAg > 2:1959103/1‑151 (MQ=255) aCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCAAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGc < 1:2937488/151‑1 (MQ=255) tgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAg > 1:1992288/1‑151 (MQ=255) gcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAgg < 1:5015402/151‑1 (MQ=255) tCCAGGTAGGCTGTGATCGCTTTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGGTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCAGCGAAGGGCTg > 2:2937215/1‑151 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGCCCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGc > 1:6306808/1‑151 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGc < 1:4323625/151‑1 (MQ=255) cAGGTAGGCTGTGATCGCGGTGAGCTTGAATTGCTCGGTGTACTTACCCAGAGAGCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCa < 1:3796886/151‑1 (MQ=255) gTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAag > 2:4669188/1‑151 (MQ=255) tAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGCGCCCGCGAAGGGCTGCAAcgc > 2:3804830/1‑151 (MQ=255) tAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagc > 2:2655587/1‑151 (MQ=255) tAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagc < 2:748284/151‑1 (MQ=255) aGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTTAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagca > 2:2779365/1‑151 (MQ=255) cTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcc < 2:1789579/151‑1 (MQ=255) cTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcc > 2:3168995/1‑151 (MQ=255) gtgATCGCTGTGAGGTTGAATTGCTCGGTGTACTGACCCATAGATGCCCCGAGGGTTGGATTGGTGTCCAACTTCTGGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 2:2481719/151‑1 (MQ=38) gtgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 1:1712094/151‑1 (MQ=255) tgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCa < 2:3505849/151‑1 (MQ=255) gCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTAc > 1:4913554/1‑151 (MQ=255) cTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACa < 1:5106990/151‑1 (MQ=255) gtgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACAtt > 2:394447/1‑151 (MQ=255) aGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTGCATTGTc > 2:4441268/1‑151 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCATGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg < 2:5351051/151‑1 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg < 2:2454763/151‑1 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg > 1:5171777/1‑151 (MQ=255) ttGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGa > 1:7066515/1‑151 (MQ=255) tGCTCGGTGTACGTACCCATAGATCCCCCGAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGaa < 2:5621689/151‑1 (MQ=255) gCTCGGTGTATTTACCCATAGGTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGCCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAt < 1:1053543/151‑1 (MQ=255) cTCGGTGTACTTACCCATGGATCCCCAAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTACAATTTCAGGATCCCCGACCCCTGTGGGGGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc < 2:3448780/151‑1 (MQ=37) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc < 2:4032905/151‑1 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc > 1:1611477/1‑151 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc > 2:187742/1‑151 (MQ=255) tgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTg > 2:3086958/1‑151 (MQ=255) tACTTACCCAAAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGc < 1:3408153/151‑1 (MQ=255) aCTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCt < 1:793183/151‑1 (MQ=255) cTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCtt > 1:6101679/1‑151 (MQ=255) cTTACCCATAGATCCCCCAAGGGTTGGATTGGTGGCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCtt < 2:5727502/151‑1 (MQ=255) tACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCTCGAAGTGCTGCAAAGCAGCCTCAATTACATTCTCTGACCGGAATCTCTTTGCTTct > 2:1497155/1‑150 (MQ=37) tACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCa < 1:2354226/151‑1 (MQ=255) tACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATGTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCa < 2:6614298/151‑1 (MQ=255) aCCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAg > 1:2407478/1‑151 (MQ=255) aTAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAg < 1:6511881/151‑1 (MQ=255) aGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGcc > 1:4558543/1‑151 (MQ=255) gATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCa < 1:5813082/151‑1 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt < 1:5705072/151‑1 (MQ=255) ccccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGc > 2:1473868/1‑151 (MQ=255) ccccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGc < 1:751264/151‑1 (MQ=255) ccccAAGGGTTGGATTGGTGTCCAACTTCTGGGGGCCAGTCCCATTTCAGGATCCACGCCCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGc < 2:4360366/151‑1 (MQ=255) cccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGcc < 2:2196831/151‑1 (MQ=255) ccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCt > 2:6233038/1‑151 (MQ=255) ccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCt > 2:1298431/1‑151 (MQ=255) cAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTg < 1:3134318/151‑1 (MQ=255) aaGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGc > 2:3216958/1‑151 (MQ=255) aGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCg > 1:32167/1‑151 (MQ=255) gggTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGa > 1:66577/1‑151 (MQ=255) ggTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGaa > 2:6908159/1‑151 (MQ=255) gTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAAc > 2:3796059/1‑151 (MQ=255) ggATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGTATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCt < 2:6048959/151‑1 (MQ=255) ggATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCCGCGAACGCt > 2:3300612/1‑151 (MQ=255) aTTGGTGTCCAACTTCTTGGGGGCAGTCCGATTTCAGGATCCACGACCCCTGTGGGTGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTgg < 2:4001161/151‑1 (MQ=255) | CAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515095‑5515382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |