| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 139,240 | G→T | intergenic (+242/+57) | RPPX_00595 → / ← RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 139,240 | 0 | G | T | 96.1% | 1148.3 / 5.3 | 335 | intergenic (+242/+57) | RPPX_00595/RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (3/10); new base T (173/148); total (177/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 335 total aligned reads displayed.
TGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCA > CP009974/139093‑139388 | tgctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTCCACCTATCGGGGGTGGTCACACATTGGTGATTGCGCGCAGGCCTTCGCGTAGGCGCGG‑GTCTACCCGCGAACATGCCGTGcc > 2:1828717/1‑151 (MQ=14)tgctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGcc > 1:3143048/1‑151 (MQ=255) gctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGccc > 2:2163288/1‑150 (MQ=255) tgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCctgc > 1:1002792/1‑151 (MQ=255) gCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCctgctg > 1:1581376/1‑151 (MQ=255) ccAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTgg < 1:4470125/151‑1 (MQ=255) aTTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCa < 1:760933/151‑1 (MQ=255) tttCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCaa < 1:4740577/151‑1 (MQ=255) ttCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAt < 1:1961606/151‑1 (MQ=255) cACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtctc > 1:1889228/1‑151 (MQ=255) cgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc < 1:7243610/151‑1 (MQ=255) gccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAccc < 2:733116/151‑1 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCGGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccg > 1:6823596/1‑151 (MQ=255) ccGTTACCGCGGCTACCGTATTCGCGGGTACACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCa < 1:2813046/151‑1 (MQ=255) ccGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCa > 1:3654449/1‑151 (MQ=255) cGTTACCGCTGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAc < 1:1325500/151‑1 (MQ=255) gTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGTAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAcc > 1:489343/1‑151 (MQ=255) ttACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCg > 2:283088/1‑151 (MQ=255) tACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGCAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGCTCCCCGt > 2:4045847/1‑151 (MQ=255) tACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGCGGCCGTGCCCGCTGGCCAATCCCCACCCCCCGCTccccct > 2:4419293/1‑149 (MQ=14) ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAc > 2:3826077/1‑135 (MQ=255) gccgcTGCCGGTTGCGGGGGTACACCCGGGGCGACAGCTATCGGGGGTGGACGCAGGTGGGTGGTTGGGCGCGGGCCGGCGTGTAGGGGCGG‑GTTGACCCGGGAAGGGGCCGGGCCGGCTGGCCAGTCTCCACCCGCCGTTCACCGTAgcc < 2:1008140/151‑1 (MQ=12) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgcc > 1:212452/1‑151 (MQ=255) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgcc > 1:143042/1‑151 (MQ=255) cccgcTGCCGTATTCGCGGGTAAACCCGCTCCTACACCTGTCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgcc < 1:2201133/150‑1 (MQ=255) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgccg < 1:1708413/151‑1 (MQ=255) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GGTTACCCGCGAAGAGGCCGTGCCTGCTGGCCACTCTCCACCCGCCGCTCACCGCAgccg > 2:6240253/1‑151 (MQ=255) cTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGcca < 1:1933486/151‑1 (MQ=255) tACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGccac > 2:3125671/1‑151 (MQ=255) gTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACt > 2:1154173/1‑151 (MQ=255) cgcgGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GGTGACCCGCGCGGAGGCCGTGCCAGCTGGCCAAACTCCACCCGCCGTTCACCGTATCCGCCACCACTCAAAc > 2:256959/1‑151 (MQ=18) gcgAGTAGACCCGCTCCTACACCTATCGCGTGTCGACCCAGATTGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAAcc < 2:5823452/151‑1 (MQ=18) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt > 1:393542/1‑151 (MQ=255) gTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCttt > 1:5467765/1‑151 (MQ=255) acgcccGCTCAGACCCCTATCGCGGGTGGACACACATTGGAGGTTGCGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa < 1:3199924/148‑1 (MQ=18) acaCCCGCTCCTACCCCTATGGGGGGTGGACACCCATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa < 1:1756838/149‑1 (MQ=255) aaaCGCTCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa < 1:385471/151‑1 (MQ=255) aaaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa > 2:3328372/1‑151 (MQ=255) aaaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa > 2:4951461/1‑151 (MQ=255) aaaCCCGCGCCTACACCTGTCGGGGGTAGACACACATTGGCGATTGGGCGCAGGCCGGCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa < 2:2820820/151‑1 (MQ=255) aaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaa > 1:6242308/1‑151 (MQ=255) ccGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAg > 1:1445857/1‑151 (MQ=255) ccGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTCTCAAAAg > 1:683450/1‑151 (MQ=255) cGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg > 1:183052/1‑151 (MQ=255) cGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg < 2:5559161/151‑1 (MQ=255) cGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg > 1:399992/1‑151 (MQ=255) gcgccTACACCTGTCGGGGGTGGACACACATTGGTGATTGGGCGCGGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc < 2:2328444/148‑1 (MQ=255) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGccc > 1:3008854/1‑151 (MQ=255) cTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCa > 1:2184650/1‑151 (MQ=255) cTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCa > 2:3737305/1‑151 (MQ=255) tACCCCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCAt < 1:6616691/151‑1 (MQ=255) acacCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAAAGGAGTGTA‑GATCTAGGAGGCCGTCCCAGCATTCAAAACAAAACCAGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAATGCCCCATg > 2:7022506/1‑151 (MQ=16) cacCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGc > 2:1983341/1‑151 (MQ=255) acCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCa < 1:3328372/151‑1 (MQ=255) cTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAcc > 1:3489269/1‑151 (MQ=255) tagcGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc < 1:4210841/148‑1 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc > 1:3739411/1‑151 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc < 1:5964754/151‑1 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc > 2:2056262/1‑151 (MQ=255) gggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGa > 2:6854509/1‑151 (MQ=255) tGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAACGG‑GTTGACCATCGCAGAGGCCGTGGCAGCAGGCAAAAAACCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTATCAAAACGCCCCATGCCACAGCACGagcc > 2:4147270/1‑148 (MQ=18) ggACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGaccac > 1:700681/1‑151 (MQ=255) ggACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGaccac < 1:6764337/151‑1 (MQ=255) cacacaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCAcccc < 1:5221493/151‑1 (MQ=255) acaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAg > 1:6005257/1‑151 (MQ=255) cactggtggTTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGa < 1:4958717/148‑1 (MQ=255) caTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGa < 1:2549561/151‑1 (MQ=255) caTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGa < 2:2889823/151‑1 (MQ=255) gATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGc > 1:6925997/1‑151 (MQ=255) aTTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGCAACTCGcc > 2:1289567/1‑150 (MQ=255) gggCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCTCGCAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAACACGCCCCATGCACCCGCACGACCACCCCACGACATTCGCCAcc > 2:5359055/1‑151 (MQ=25) gcgcAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCct > 2:1265392/1‑151 (MQ=255) gcgcAGGCCGCCGTGTAGGAGCGG‑GTTTCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCct < 1:1247560/151‑1 (MQ=255) cgcAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctc > 1:5334349/1‑151 (MQ=255) gtcgtGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATCCGCAACCCCCTCCGcaca > 2:6670639/1‑151 (MQ=255) gtgtAGGAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca < 1:3051822/151‑1 (MQ=255) ggAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc < 2:1613146/151‑1 (MQ=255) ggAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc > 1:5832260/1‑151 (MQ=255) gAGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCg > 2:5206572/1‑151 (MQ=255) gAGCGG‑GTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCg < 2:5640203/151‑1 (MQ=255) ggCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg < 2:2709837/150‑1 (MQ=255) aGCGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg < 2:4878352/151‑1 (MQ=255) gCGG‑GTTCTCCCGGGAAGAGGCCGTGCCTCTCACCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAATAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCggg < 2:1438117/151‑1 (MQ=255) cGG‑GTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGt > 2:6161650/1‑151 (MQ=255) gg‑gTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTa < 2:2980778/151‑1 (MQ=255) g‑gTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAg > 1:7153061/1‑151 (MQ=255) tttACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGtt > 2:4672687/1‑151 (MQ=255) tttACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCCTCGCACAACAGCGCCGGGTAGtc > 2:3642886/1‑150 (MQ=255) ttACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCGCCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTa > 1:562038/1‑151 (MQ=255) ttACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTa < 2:6000705/151‑1 (MQ=255) tACCCGTGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTAc < 2:4291350/151‑1 (MQ=255) tACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTGGCAACACTCTTCGGACACCACCGCCGGGTAGTTAc > 2:1770611/1‑151 (MQ=38) cccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTg < 1:5011992/151‑1 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGAACAACAGCGCCGGGTAGTTACTGt > 2:356078/1‑151 (MQ=255) cgcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGtt < 1:6432080/151‑1 (MQ=255) gcgAAGGGACCGTGCCTGCTGCCCAATCTCCCCCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTc < 2:682087/151‑1 (MQ=255) gcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTc < 1:5117882/151‑1 (MQ=255) gAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa > 1:2615964/1‑151 (MQ=255) agagGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATg > 2:5898911/1‑151 (MQ=255) cGGGCCGGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCa < 2:871612/151‑1 (MQ=255) | TGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGG‑GTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCA > CP009974/139093‑139388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |