| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,490,016 | G→A | intergenic (+31/‑317) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,490,016 | 0 | G | A | 80.9% | 924.6 / 167.1 | 422 | intergenic (+31/‑317) | RPPX_06570/RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base G (37/43); new base A (128/211); total (166/256) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.70e-02 | |||||||||||
Only 100 of 439 total aligned reads displayed.
GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 | cTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacgg < 1:7187419/151‑1 (MQ=255) cGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGGAAACCCGCTCCTACGACGGCCTg > 2:4898577/1‑151 (MQ=255) gATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg < 1:6380261/151‑1 (MQ=255) atCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc > 2:2355882/1‑151 (MQ=255) tCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAcc < 1:1199881/151‑1 (MQ=255) cGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCg < 1:4103550/151‑1 (MQ=255) gAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCgg > 1:3102175/1‑150 (MQ=255) aGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAt < 1:6037522/151‑1 (MQ=255) aGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAt < 1:2758096/151‑1 (MQ=255) gCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGTGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtg > 1:1356888/1‑151 (MQ=255) cATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgt < 1:1906262/151‑1 (MQ=255) gCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgtgtg > 1:2018320/1‑151 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 2:73501/151‑1 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 1:5278175/151‑1 (MQ=255) gCCTGCGCAAGTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCAc < 2:5584815/151‑1 (MQ=255) gCCTGCGCAAATGCTGGCTGAGGGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCAc < 2:640817/151‑1 (MQ=255) ccTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACt < 2:3740954/151‑1 (MQ=255) tccgcAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGt < 1:1548773/149‑1 (MQ=255) tGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGt < 1:6577882/151‑1 (MQ=255) gcAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGACGTGTGCCCACTGTAgg > 2:7091706/1‑151 (MQ=255) cAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGa < 1:328081/151‑1 (MQ=255) aaagctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGc < 2:2936169/148‑1 (MQ=255) tggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGttt < 2:2795081/151‑1 (MQ=255) tgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAcc > 1:3801896/1‑151 (MQ=255) tgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCCGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAcc > 2:107165/1‑151 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:103818/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:4972463/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:2557860/151‑1 (MQ=255) aGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCCTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCcg < 1:2996460/151‑1 (MQ=255) ggggggTGGTTGCAGCCGGGAACGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGa < 1:3657311/149‑1 (MQ=25) ggggCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGaa < 2:1814889/150‑1 (MQ=255) cGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGaa < 1:3314618/151‑1 (MQ=255) gCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATAc < 1:3891805/151‑1 (MQ=255) ggATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGAt > 2:2010105/1‑151 (MQ=255) gATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGTGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTTTAGGAGCGGGTTTACCCGCGAATGCGATa > 1:690905/1‑151 (MQ=255) cAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcgg < 2:3266845/151‑1 (MQ=255) aGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGGAGGAGCGGCTTTACGCGCGAATACGATggcggc > 2:1547941/1‑151 (MQ=25) ccGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAgcggcgg < 2:1356888/151‑1 (MQ=255) cGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggc < 2:5773266/151‑1 (MQ=255) gggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggcg < 1:4339183/151‑1 (MQ=255) ggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGa < 1:1241498/151‑1 (MQ=255) ggAGCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAACCCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGa < 2:7178215/151‑1 (MQ=255) gATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGAc < 2:4081310/151‑1 (MQ=255) aTCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACg > 1:888520/1‑151 (MQ=255) ctccggCGTCGGTGAACGCTGGGATGGCCTGGGCCGGGCGCTCGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACgg < 2:1678895/147‑1 (MQ=14) cGAGGCTACGGTGAAGGCTCTCCTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCAGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGAAGCAGTTTTACCCGCGAATACGATAGCGGCGGCGACGGt < 2:2672244/151‑1 (MQ=18) gAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTg > 2:2831486/1‑151 (MQ=255) aGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGa < 1:2459920/151‑1 (MQ=255) aGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGa > 2:567520/1‑151 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 2:650871/151‑1 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGAGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 2:867452/151‑1 (MQ=255) gcGGGGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGGGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAcggc < 2:3831514/150‑1 (MQ=18) cGGTGAAGGCTCGCGTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCGGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAcggcg < 2:6046293/151‑1 (MQ=255) ggTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGAc < 1:4781574/139‑1 (MQ=255) ggTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGAc > 2:4781574/1‑139 (MQ=255) tGAGGGCGCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGt < 2:2340187/151‑1 (MQ=17) gcaGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTg < 2:429027/149‑1 (MQ=255) gAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGCTCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGACAACGGTGAACGGCCGGTg > 2:2998650/1‑151 (MQ=18) aGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGACGACGGTGaa > 1:5701182/1‑140 (MQ=255) cTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAAt < 2:6989055/114‑1 (MQ=255) tCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAGCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAAtt > 2:6333061/1‑151 (MQ=255) gCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTgg < 1:4182615/151‑1 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc < 2:3466839/151‑1 (MQ=255) tGGCCAGGCTCGGGCTGTAGGGCGCTTTGGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCca < 2:367776/151‑1 (MQ=14) tGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGGGagaagagacca > 1:2333383/1‑144 (MQ=17) aggctcaggctcTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCagcagc < 1:1698300/151‑1 (MQ=255) ggCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGcc < 1:847003/151‑1 (MQ=255) gCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGgcc > 1:1780501/1‑151 (MQ=255) cTCGGGCTCTCGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATAc < 1:6297364/102‑1 (MQ=255) gggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTCTAccc < 1:7030566/91‑1 (MQ=17) gCTCTCGGGCGCTTTCGCGGGTAAACCCGCTGCTACGACGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAggcccggccc < 2:5032261/151‑1 (MQ=11) gCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGccc < 1:164138/151‑1 (MQ=255) ctctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCt < 1:732701/151‑1 (MQ=255) aggcacggCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCt < 1:2693941/145‑1 (MQ=11) ctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCttt < 1:350172/151‑1 (MQ=255) tAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCctgcag > 1:678983/1‑138 (MQ=14) tAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCctgcag < 2:678983/138‑1 (MQ=11) gggCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTcgc < 1:3690735/151‑1 (MQ=255) gcgcTTTGGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCgg < 2:2202021/151‑1 (MQ=255) gcgcTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCgg > 1:5560339/1‑151 (MQ=255) cgcTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGa < 1:4499260/68‑1 (MQ=40) cgcTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGa > 2:4499260/1‑68 (MQ=40) cccTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGa > 1:1456720/3‑43 (MQ=25) cccTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGa < 2:1456720/41‑1 (MQ=25) gcTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGt < 1:2112233/151‑1 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCAc < 2:1713919/59‑1 (MQ=18) tttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGa < 2:2039303/151‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACg < 1:5809554/83‑1 (MQ=35) cgcgGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAcgg > 1:6536438/1‑106 (MQ=11) cgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACgg > 2:3356418/1‑81 (MQ=18) cgGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCg < 1:3188419/151‑1 (MQ=255) ggTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGcc > 1:1943527/1‑150 (MQ=11) ggTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGCAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGCACGGCGGGTGAAAATTGGCCTGCAGACCCGGCCCTTTCTCGGGTGAACCCGcc > 2:510655/1‑150 (MQ=11) tAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTcc < 2:2570950/151‑1 (MQ=255) aCCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGCGCGCACTGGAGGGGCGGCGTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCAGCTCCTAc < 1:5354891/151‑1 (MQ=11) cccGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTCGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcg < 2:6268380/151‑1 (MQ=255) tCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCggg < 1:5127656/151‑1 (MQ=255) ccTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCCGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGGGAACCCGCGCCTACGGCGGGc > 2:6900664/1‑151 (MQ=11) cTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCCTTCGCCGGTGAACCCGCTCCTAcggcggccc > 2:530926/1‑148 (MQ=11) cggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgcg > 1:4681832/1‑151 (MQ=11) | GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |