| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,490,020 | G→C | intergenic (+35/‑313) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,490,020 | 0 | G | C | 80.8% | 1082.0 / 210.5 | 443 | intergenic (+35/‑313) | RPPX_06570/RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base G (39/46); new base C (129/228); total (169/274) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 450 total aligned reads displayed.
CCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCCCGAT > CP009974/1489872‑1490170 | ccGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCt < 1:2701662/151‑1 (MQ=255) ggATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgc > 2:5152271/1‑151 (MQ=255) gATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg > 1:4424729/1‑151 (MQ=255) gATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg < 2:4340644/151‑1 (MQ=255) tatCTATGTCAAGCATACCACGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGCGATCCAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGcc < 1:3106328/151‑1 (MQ=38) tCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCg > 1:2113853/1‑151 (MQ=255) cTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGa > 2:2693040/1‑151 (MQ=255) cTAGGTCGCGCATGCCAAGCCTGCGCGAGGGCTGGCTGGGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTGGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGa < 2:104179/151‑1 (MQ=38) aTGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTCAACCCGCTCCTACGACGGCCTGCGCCCGATc > 2:3589750/1‑151 (MQ=255) aTGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATc < 1:5929103/151‑1 (MQ=255) tCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAcc < 1:1199881/151‑1 (MQ=255) gAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGa > 1:688930/1‑151 (MQ=255) cATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgt < 1:1906262/151‑1 (MQ=255) cATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgt < 2:7075777/151‑1 (MQ=255) gCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgtgtg > 1:2018320/1‑151 (MQ=255) gCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgtgcg > 2:2290563/1‑149 (MQ=255) cAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGcc > 1:4127084/1‑151 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 2:73501/151‑1 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 1:5278175/151‑1 (MQ=255) tccgcAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGt < 1:1548773/149‑1 (MQ=255) gcgcAAGTGCTGGCTGAGTGCGGGGTGGATGCAGCCGGGATCGAGGGTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTa < 1:4212086/151‑1 (MQ=37) aaaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAg < 2:6212027/151‑1 (MQ=255) aaaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAg > 2:5625553/1‑151 (MQ=255) aaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGGCTGCGCCCGATCACCGATGTGTGCCCCCCGTCGGAGc > 1:3203687/1‑151 (MQ=255) aaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGc < 2:1575222/151‑1 (MQ=255) gctggcggAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt < 2:684705/151‑2 (MQ=255) ctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggtt > 2:6747600/1‑149 (MQ=255) gctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTACGAGCGGttttt > 2:2971009/1‑150 (MQ=255) gctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCCCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTATAGGAGCGGGTTTa > 1:3858387/1‑151 (MQ=255) ctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAc < 1:819434/151‑1 (MQ=255) tgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAcc > 1:3508840/1‑151 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:4972463/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:103818/151‑1 (MQ=255) cgTGGGGGCTAGATACAGCAGGGATCGAGGATTCGATGAGGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCcg < 2:646841/150‑1 (MQ=21) aGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCcg < 2:4957553/151‑1 (MQ=255) cGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCcgcgca > 1:7017433/1‑149 (MQ=255) cAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcgg < 2:1696918/151‑1 (MQ=255) aGCCGCGATCGAGGCTCCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggc < 1:859816/151‑1 (MQ=21) gCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcg < 2:3834597/151‑1 (MQ=255) ggggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggc < 2:282014/150‑1 (MQ=255) cGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggc < 2:3678590/151‑1 (MQ=255) ggAGCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAACCCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGa < 2:7178215/151‑1 (MQ=255) aTCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGTCGGCCTGCGCCCGATCACCGATCTCGGCCCACTGTACGAGCGGTTTTACCCGCGAATACGCTAgccgcgcagaca > 2:1335068/1‑145 (MQ=37) aTCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGCTTTACCCGCGAATACGATAGCGGCGGCGACg > 1:3014849/1‑151 (MQ=255) ggCTGCGGTGAGGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTGTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGaa < 2:2622226/151‑1 (MQ=18) gCTTCGGTGAAGGCTCGCATGGCGAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 2:4713921/151‑1 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGAGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 2:867452/151‑1 (MQ=255) gCTTCGGTGAAGGATCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGGGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 2:3277646/151‑1 (MQ=18) ggTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGAc < 1:4781574/139‑1 (MQ=255) gTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCTGGGAAACCCGTTCCTATGACGGCCTGCGCTCGATCACCGATGTGTGCTCACTGTAGGAGCGGTTTTACCCGCGAAGACGATTCCCGCGGCTATGATGAACGGCggg > 1:2585183/1‑151 (MQ=255) tGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGt < 1:2805159/151‑1 (MQ=18) gCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGaaaa > 1:5324587/1‑151 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGGGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc > 2:6325193/1‑151 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACGGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc < 2:5359058/151‑1 (MQ=255) tGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGGGagaagagacca > 1:2333383/1‑144 (MQ=17) gCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagc < 1:6544160/151‑1 (MQ=255) cAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagcag < 1:6767592/151‑1 (MQ=255) aggctcaggctcTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCagcagc < 1:1698300/151‑1 (MQ=255) gCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGgcc > 1:1780501/1‑151 (MQ=255) gCTCGGGCGCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCGGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGccc < 2:6975956/151‑1 (MQ=255) gggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGc > 1:1957483/1‑151 (MQ=14) ggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGcc > 1:639151/1‑151 (MQ=255) ggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGcc < 2:5707945/151‑1 (MQ=255) gCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGccc < 1:164138/151‑1 (MQ=255) ctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCttt < 1:3739868/151‑1 (MQ=255) ctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCttt < 1:3924130/151‑1 (MQ=255) cggggCGCTTTCGCGGGTAAACCCGCTCGTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTc < 2:3168561/149‑1 (MQ=11) aGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGGCTGCGCCCGATCACCGATGTGTGCCCACTGt < 1:3436632/68‑1 (MQ=255) aGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTcg < 1:723759/151‑1 (MQ=255) cccTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGa > 1:1456720/3‑43 (MQ=25) ggtttCGCGGCAAACCCCGCTTATACGGCGGCCTGCGCCCGAGCACCGGTGTGTGCCCCCTGTAAGGGCGGTCTTACCCGCGAATACGATAGGGGCGGCGACGGGGAACGGCGGGTGAAACTTGGCCAGCAGCCCCGGCCCTTTCGCGGGt < 2:2153248/149‑1 (MQ=21) ccTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTgc < 1:4380702/35‑1 (MQ=37) tttCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGccc > 2:1477749/1‑38 (MQ=255) tCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAAc < 2:1749922/151‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCAc < 1:6079087/55‑1 (MQ=38) cgcgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACg < 1:5805871/83‑1 (MQ=35) cgcgGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAAcc < 2:505642/151‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACgg < 2:2346251/84‑2 (MQ=255) gcgGGTAAACCCGGTCCTACGACGGCGTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAAccc < 1:3282495/151‑1 (MQ=255) cgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACgg > 2:3356418/1‑81 (MQ=18) cgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGcc < 2:5890595/120‑1 (MQ=11) cgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAgcggcggcg > 2:1860019/1‑93 (MQ=34) gggTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGc > 1:1242018/1‑151 (MQ=11) ggTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAgcgg > 1:3679198/1‑86 (MQ=255) gTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTc < 2:4785108/151‑1 (MQ=255) aCCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAc > 1:5623014/1‑151 (MQ=11) cccGCTCCTACGACGGCCTGCGCCCGTTCATCGATGTGTGCCCAGTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGACCGGCGGGTGAAAATTGGCCGGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcg < 2:3780322/151‑1 (MQ=11) tCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCggg < 1:5127656/151‑1 (MQ=255) ccTGCGGCGGCCTGCGCCCGATGACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGc < 2:2890929/151‑1 (MQ=11) ccTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGc < 1:2517162/151‑1 (MQ=255) tACGGTGGGCTGCGCCCGATCACCGATGTGGGCCCGCTGTAGGAGCGGGTTTACCCGCTATTACGGTAGCGGCGGCAACGGTGAGCGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTg < 2:639032/151‑1 (MQ=14) acgacgGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgc < 2:2018320/151‑1 (MQ=255) acgacgGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgc < 1:6317030/151‑1 (MQ=255) cggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgcg > 1:4681832/1‑151 (MQ=11) gcgtGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGcc < 2:4121798/151‑1 (MQ=255) cggGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGccc < 1:1335068/151‑1 (MQ=255) cggCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGccc < 2:1379056/151‑1 (MQ=255) gggCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCg < 1:5403397/151‑1 (MQ=255) gCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGCACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCCCCTACGGCGGCCCGCGCCCgcc > 2:2508125/1‑149 (MQ=11) gCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCACGAt > 1:707628/1‑151 (MQ=14) | CCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCCCGAT > CP009974/1489872‑1490170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |