| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,594 | G→C | intergenic (‑5372/‑3225) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,594 | 0 | G | C | 81.1% | 6656.3 / inf | 4472 | intergenic (‑5372/‑3225) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (375/353); new base C (1563/1553); total (2255/2217) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 | |||||||||||
Only 100 of 4480 total aligned reads displayed.
GCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTC > CP009974/1897445‑1897741 | gtcactgccccggacaacgtctacgtcggtagcaacgacccggttgtgatgtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGc > 1:5022302‑M2/129‑151 (MQ=255) gCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCa > 2:1560833/1‑151 (MQ=255) caccagACAACTTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCAGCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCaa < 2:2329355/146‑1 (MQ=255) caccagACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCaa < 2:3153978/146‑1 (MQ=37) ccagACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACg > 2:60526/4‑151 (MQ=255) cGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGa > 2:1712959/1‑151 (MQ=255) agACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGACAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGCGCCAGGCACCCCGGGCAACGaa > 2:3789534/2‑151 (MQ=25) gtctacgtcggtagcaacgacccggttgtgatgtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAggcgctc > 2:3515977‑M2/111‑148 (MQ=255) gTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGata < 1:143237/151‑1 (MQ=255) tCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGacat > 1:6408128/1‑148 (MQ=255) tCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGacac > 2:5048607/1‑148 (MQ=255) tCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTTAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGatat > 1:1729183/1‑151 (MQ=25) cTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACatc < 2:658394/151‑1 (MQ=255) gtagcaacgacccggttgtgatgtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGt > 2:3389510‑M2/101‑151 (MQ=255) gCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCGCCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATACCATCAAGGt > 1:4261480/1‑151 (MQ=255) cACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTc < 2:6150339/151‑1 (MQ=37) cACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTc < 1:4609764/151‑1 (MQ=255) gtAACGAGCCGGTGGTCAATGCCAGCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCAc < 2:3922525/150‑1 (MQ=255) caatgcgCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGCCCAGGTCAcc > 2:2475545/7‑151 (MQ=37) caacgcgCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCAcc > 1:6733926/7‑151 (MQ=255) aaCCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCActa < 1:3977024/151‑3 (MQ=255) acgcgCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCAt < 1:1279353/147‑1 (MQ=255) acgcgCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCACGCACCCCGGGCAACGAAGGCGCTATCATCAACGTCACCac > 1:5800129/5‑150 (MQ=255) cAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCActatta > 1:6841210/1‑146 (MQ=255) cccggttgtgatgtcgatcgcaaccgttgagggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACg < 1:6260802‑M2/61‑1 (MQ=255) cggttgtgatgtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGc > 1:1882640‑M2/89‑151 (MQ=255) gtggtCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGctg > 2:6472183/1‑149 (MQ=37) tggtCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGa > 1:5913451/1‑151 (MQ=255) ggtCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGAc < 2:3007610/151‑1 (MQ=37) tgatgtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCa < 1:6033542‑M2/69‑1 (MQ=255) tCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCa > 1:412217/1‑151 (MQ=38) ccaTGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAg < 2:4185675/149‑1 (MQ=255) aaTGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGa < 2:5919933/151‑1 (MQ=25) aTGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGAc < 2:77232/151‑1 (MQ=21) gtcgatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGact < 1:2608469‑M2/73‑2 (MQ=255) gatcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCg < 2:1269097‑M2/76‑1 (MQ=255) aTCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCgg < 1:2177997/151‑1 (MQ=37) aTCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCgg < 1:5367457/151‑1 (MQ=21) aTCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCgg > 2:2751753/1‑151 (MQ=21) tcgcaaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGt < 1:1594306‑M2/78‑1 (MQ=255) ggcaaccggtgaaggcgcgggtggcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTg < 2:4041893‑M2/79‑1 (MQ=255) gACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGtag > 2:138947/1‑149 (MQ=21) caaccgttgaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGc > 2:1169971‑M2/71‑151 (MQ=255) cgcgGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGcc > 1:2442129/1‑150 (MQ=37) ggTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCgag > 1:5241755/1‑151 (MQ=37) ggTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGtagccgag > 1:2926954/1‑144 (MQ=18) cgTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGCCACCATCACGGCCGACCAGACGTCGGTGGCCgag > 2:5302405/2‑151 (MQ=255) gTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCgaga > 2:1923757/1‑151 (MQ=18) gTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCgaga < 2:5792397/151‑1 (MQ=18) tCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGaa < 1:2338754/151‑1 (MQ=18) gaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACg < 2:5649499‑M2/89‑1 (MQ=255) aGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACg > 1:6614054/1‑151 (MQ=18) gcggcgCAGATGCATGGAAGTTCGAAAACCTGAACCCGCCCACGACTCCAGTCAGCACCGAGGTGACCGCCGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGt < 1:475426/151‑1 (MQ=18) aaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGAAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGt < 1:7084196‑M2/90‑1 (MQ=255) cggcgCTGATGCGTGGAAGGTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGACACCATCCCGGCCGACCAGACGTCGGTGCCCGAGAACgcc > 2:5191723/1‑149 (MQ=255) ggcgCGGATGCATGGAAGTTCGAAAACCGGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCa < 2:3283982/151‑1 (MQ=21) ggcgCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCCCGGCCGACCAGACCTCGGTGGCCGAGAACGTCa > 2:888163/1‑151 (MQ=25) ggcgCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCa > 1:3051442/1‑151 (MQ=18) cgcAGATGCGTGGAAGATCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGATGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaaa < 2:2069565/151‑2 (MQ=21) gcAGAGGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaaac < 2:4776185/151‑3 (MQ=21) tgATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAAccg < 1:342883/150‑2 (MQ=17) gATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGccga < 2:6881371/151‑3 (MQ=255) cgtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCtt > 2:3645544/3‑151 (MQ=18) cATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCtt < 1:6118922/151‑1 (MQ=9) ggAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCCTCACGGCCGACCAGACCTCGGCGGCCGCGAACGTCCAACCGACCTTCAc > 2:4623234/1‑151 (MQ=37) ggAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACATTCAc > 2:5424076/1‑151 (MQ=18) ggAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCAACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAc < 1:2031947/151‑1 (MQ=18) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCAcc < 2:6396397/151‑1 (MQ=255) aGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGt > 1:5125031/1‑151 (MQ=18) tCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCa > 1:5723724/1‑151 (MQ=2) acctgaacctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACTAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCaa > 1:5468089/1‑151 (MQ=18) ctgaacctgGACAAGCCCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAAcc < 2:7044119/151‑1 (MQ=14) ctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAAcc < 1:2764624/151‑1 (MQ=2) tgaacctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCa > 1:7203111/1‑151 (MQ=14) tgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCACCCa > 2:6291112/1‑151 (MQ=17) acctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 1:5577170/151‑1 (MQ=17) ggACAAGCCCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTg < 2:6737954/151‑1 (MQ=11) aCAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTAAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTAGc < 2:2885154/151‑1 (MQ=14) aaGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGctc < 1:1002582/151‑3 (MQ=11) gaccccggTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCAc > 1:6497067/8‑151 (MQ=17) acccccgTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACg > 1:783188/7‑151 (MQ=14) ccccggTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGa > 2:5548460/6‑151 (MQ=11) cggTCAGCACCGGGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCt < 2:1019024/149‑1 (MQ=17) ggTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTg > 1:3583396/2‑151 (MQ=17) tCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTgct > 2:4914711/1‑149 (MQ=17) gCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGt < 2:4292092/151‑1 (MQ=11) gCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCAACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGt > 2:2590823/1‑151 (MQ=17) aCCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGCGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGa > 1:4895470/1‑151 (MQ=11) aCCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGa > 1:3297974/1‑151 (MQ=17) ctaccgTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAc > 2:7179904/6‑151 (MQ=11) gTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGa < 1:318892/151‑1 (MQ=14) gACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGc > 1:931771/1‑151 (MQ=11) cactgacgaGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGc < 1:1139657/147‑1 (MQ=17) gacgaGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGCGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTAAGcaaca > 2:4445949/1‑151 (MQ=11) gaGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACg > 1:3843782/1‑151 (MQ=17) gaGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaatg > 1:4496262/1‑149 (MQ=14) gCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGct < 1:6940720/151‑2 (MQ=14) ccAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGctc < 1:3729985/151‑3 (MQ=14) cAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCa > 1:4369249/1‑151 (MQ=17) aGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAg < 2:2201369/151‑1 (MQ=17) | GCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTC > CP009974/1897445‑1897741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |