| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,654 | T→C | intergenic (‑5432/‑3165) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,654 | 0 | T | C | 76.0% | 3391.8 / inf | 3145 | intergenic (‑5432/‑3165) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (406/347); new base C (1215/1175); total (1622/1523) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 3151 total aligned reads displayed.
CGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTAC > CP009974/1897504‑1897804 | gcgGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTg > 1:5287461/1‑151 (MQ=21) gTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCgaga < 1:7151904/151‑1 (MQ=25) gTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCgaga < 2:5792397/151‑1 (MQ=18) tCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGaa > 2:6715223/1‑151 (MQ=255) gcggcgCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGt > 2:5655328/1‑151 (MQ=21) cggcgCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTc > 2:6568604/1‑151 (MQ=18) ggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCa > 1:4954817‑M2/60‑151 (MQ=255) ggcgCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCa > 1:6091010/1‑151 (MQ=18) gcgcTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaa > 1:6909196/1‑151 (MQ=18) gcgcTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGCCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGCCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaa > 1:5871675/1‑151 (MQ=255) cgcAGATACATGGAAGTTCGAAAACCTGAACCGGGACAAGACTCCAATCAGCACCGAGGTGACCGACGGGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCaaa < 2:2097438/151‑2 (MQ=17) gcAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaaac > 2:1602865/1‑149 (MQ=21) gcAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaaac > 1:850161/1‑149 (MQ=25) gcAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaaac < 1:2789264/151‑3 (MQ=25) cAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAcc < 2:3737616/151‑1 (MQ=17) cAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAcc < 1:5182327/151‑1 (MQ=12) cAGAGGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAcc < 1:6001092/151‑1 (MQ=17) tgATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGGACGTCAAcccg > 2:5897200/2‑150 (MQ=17) tgATGCATGGAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAAccg < 2:2329070/150‑2 (MQ=21) aGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAAccg > 1:3621196/1‑150 (MQ=21) aGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAccg < 1:2936465/151‑2 (MQ=12) gATGCGTGGAAGTTCGAAAACCTGAACCTGGACACAACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAAccga < 2:6853209/151‑3 (MQ=25) gATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAccga < 1:5737646/151‑3 (MQ=17) aTGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCaaaccgac < 2:1195386/151‑7 (MQ=12) tGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGGCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGAcc < 2:4265608/151‑1 (MQ=25) tGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGAcc < 1:2485871/151‑1 (MQ=9) cATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCtt > 1:7054395/1‑151 (MQ=9) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTTACCGACGAGCCAGGTACCGCCGGCCGA‑GATGGCCATAGCATCAAGGAGATCAGCACGGCGGACCAGCGCTCGGTGGCCGAGAACGTCAAACCGACCTTc < 1:4548183/150‑1 (MQ=12) tGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCa < 2:1330/151‑1 (MQ=25) tGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCa > 1:3758930/1‑151 (MQ=17) ggAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCGCCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAc > 2:6386479/1‑151 (MQ=18) gAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCAct > 2:751663/1‑150 (MQ=14) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCAcc > 2:3606300/1‑151 (MQ=14) gAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAcc < 2:2614607/151‑1 (MQ=18) aGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGt < 1:5618660/151‑1 (MQ=9) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCAc > 1:6646638/1‑151 (MQ=17) gAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACg > 1:2199783/1‑151 (MQ=14) aaaaCCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGt > 1:3069860/1‑151 (MQ=2) aaccctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTc < 1:6520076/148‑1 (MQ=2) aaaCCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTc > 1:6214022/1‑151 (MQ=2) aaaCCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTc > 1:4795650/1‑151 (MQ=21) aaaCCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCACACCGACCTTCACCGTGCACGTc > 1:1607974/1‑151 (MQ=14) aacctgaacctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCa > 1:4207816/1‑151 (MQ=18) gctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGCACATCAAc < 1:3478655‑M2/118‑1 (MQ=255) cggagcctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAAcc < 2:7029820/146‑1 (MQ=17) tgaacctgGACAAGAGGGCGGTGAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCa < 2:5207619/151‑1 (MQ=14) tgaacctgGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGCCATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCCACCTGCACCGTGCACGTCAAACa > 2:4814614/1‑151 (MQ=17) tgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCa < 2:2208311/151‑1 (MQ=17) tgaacctgGACAAGACCCCAGTCAGCACCACCGTCACTGACGAGCCTGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCa < 1:2365059/151‑1 (MQ=17) gaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAg < 2:4686494/151‑1 (MQ=17) gaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAg > 1:3221690/1‑151 (MQ=2) gaacctgGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGt > 1:4458471/1‑138 (MQ=14) acctgGACAAGCCTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGcc < 1:4047817/151‑1 (MQ=14) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:873927/151‑1 (MQ=11) cctgGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCg > 2:3969492/1‑151 (MQ=14) gACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTC‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTGCACCGTGCACGTCAACCAGCCGCTgg > 2:2797875/1‑151 (MQ=17) gACAAGACCCCGGTCAGCACTCCCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTgg < 2:4097077/151‑1 (MQ=14) aCAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGc < 1:5483998/151‑1 (MQ=14) aaGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGctc < 1:1002582/151‑3 (MQ=11) aGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa > 2:4540152/1‑151 (MQ=11) accccggTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACg > 2:1935446/7‑151 (MQ=17) ccccgTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAc > 1:5067931/5‑151 (MQ=14) cAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATc < 2:7148140/151‑1 (MQ=14) cACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTg > 2:3065340/1‑151 (MQ=11) ccGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAc < 1:958576/151‑1 (MQ=11) cGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAcc > 1:3886801/1‑151 (MQ=17) cGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAcc < 1:5393133/151‑1 (MQ=17) gAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGAccc > 2:2499518/1‑151 (MQ=11) gAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAccc < 1:1724786/151‑1 (MQ=11) aGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCt < 1:2642962/151‑1 (MQ=17) gtcactgacgaGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGa > 2:6461631/7‑151 (MQ=17) gTGACCGACGAGCCAGGCA‑CCCCGAGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGa < 1:1166422/151‑1 (MQ=14) tGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg > 2:6299374/1‑151 (MQ=14) ccGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGcaa > 2:3236163/1‑151 (MQ=11) gaGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaatg < 1:677661/151‑3 (MQ=14) gCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGct > 1:4670990/1‑150 (MQ=14) gCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGATGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGct > 2:2929709/1‑150 (MQ=11) ccAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGccc > 2:3483239/1‑151 (MQ=17) aGGTA‑CCCCTGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAg > 1:4319780/1‑151 (MQ=17) aGGCA‑CCCCTGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAg < 2:4409147/151‑1 (MQ=11) ccaggCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCa > 1:1458762/4‑151 (MQ=11) gggCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATc > 2:5395155/1‑151 (MQ=14) ggtaaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCa > 1:2042332/4‑151 (MQ=255) gCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCaa < 2:1729146/151‑1 (MQ=11) aaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAgg > 1:1296090/1‑151 (MQ=14) cGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGcc > 1:6457974/1‑151 (MQ=11) aaGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTgg < 2:4934228/151‑1 (MQ=11) cGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCCTCAAGGCTggcgca > 2:5058640/1‑147 (MQ=11) gATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGaaa > 2:3354741/1‑151 (MQ=11) aaGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAACCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAgtgcgc < 2:5302288/151‑1 (MQ=11) agTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCg < 1:3338626/150‑1 (MQ=255) ccATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATAAAGGCCGGTGAAACCAGTGCGCCGTacac < 2:552006/151‑1 (MQ=14) ccATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGTGCGCCGTacac > 2:1484116/1‑151 (MQ=11) cATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACAcc > 1:72462/1‑151 (MQ=255) aTCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACAccc < 1:6367898/151‑1 (MQ=255) cACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCac < 2:6015883/151‑1 (MQ=255) ggCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCacgac > 2:6118878/1‑151 (MQ=255) ggCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGTGCGCCGTACACCCacgcg < 2:3860442/151‑3 (MQ=11) gACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCacgatgcgc > 1:191397/1‑146 (MQ=11) cGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGa > 2:1067355/1‑151 (MQ=11) | CGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTAC > CP009974/1897504‑1897804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |