| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,666 | G→A | intergenic (‑5444/‑3153) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,666 | 0 | G | A | 77.5% | 2886.6 / inf | 2639 | intergenic (‑5444/‑3153) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (307/285); new base A (1026/1009); total (1339/1300) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-11 | |||||||||||
Only 100 of 2646 total aligned reads displayed.
CAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAGGC > CP009974/1897518‑1897816 | cATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCtt > 1:4183366/1‑151 (MQ=9) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTc < 1:7217185/150‑1 (MQ=21) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTc < 2:6574915/150‑1 (MQ=25) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTc > 2:2652223/2‑151 (MQ=25) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTc < 2:4634429/150‑1 (MQ=17) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTc > 1:5378761/2‑151 (MQ=17) aTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGCCAAACCGACCTTc > 2:6463157/1‑151 (MQ=12) tGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTcc > 2:751997/1‑150 (MQ=17) aaGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAAGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCg < 1:78246/151‑1 (MQ=18) aaGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCg > 1:6878052/1‑151 (MQ=17) aGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCActgt > 1:4315899/1‑148 (MQ=9) gttcgaacagctggcgctggacaaggcgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTg < 2:1226754‑M2/109‑1 (MQ=255) gTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTg < 1:6343549/151‑1 (MQ=18) ttCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGc < 2:5397454/151‑1 (MQ=255) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCAc > 2:3521879/1‑151 (MQ=14) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCAc > 2:2545757/1‑151 (MQ=17) gAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACg > 1:2199783/1‑151 (MQ=14) gAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACg > 1:4614255/1‑151 (MQ=21) gAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACg > 2:3892191/1‑151 (MQ=18) accctgaccctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCa < 2:5198755/149‑1 (MQ=14) aacctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGCACGTCAAACCGACCTTCACCGTGCACGTCa > 2:7030519/1‑151 (MQ=2) gcctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCaa < 2:4475126/150‑1 (MQ=2) acctgaacctgGACAAGGCCCCGGTGAGCGCCGAGGTGACCGACGAGCTAGGTACGCCGGGCAGCGAAGGCGATATGGACAAGGTCACCACCACGGCCGACCAGACCTCGGTAGCCGAGAACGACAAACCGACCTTCACCGTGCAcctaac > 2:2263339/1‑146 (MQ=14) acctgaacctgGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCaa < 2:3794301/151‑1 (MQ=17) cctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAAc > 2:150796/1‑151 (MQ=11) ctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAAcc < 1:2764624/151‑1 (MQ=2) aacctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGc > 1:9068/1‑151 (MQ=17) cgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGGGGCCGAGAACGTCAAACCGACGTTCACCGTGCACatcaacaccgc > 2:4882405‑M2/29‑146 (MQ=255) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:873927/151‑1 (MQ=11) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACTAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:6882295/151‑1 (MQ=17) cctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTTGCACCCCAGTCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTTACCAGACTTCTGTAGCCGAGAACGCCCAACCGACCTTCACTGTGCACGTCAACCaccac > 2:5023465/1‑147 (MQ=255) cctgGAACAGACCCCCGTCAGCACCGAGGTGCCCGACGAGCCACGCACCCTGGGCAACGAAGGCGATATCGTCAAGGTCACCATCGCGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCg < 2:4747453/151‑1 (MQ=14) ggACAAGCCCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTg < 2:6737954/151‑1 (MQ=11) ggACAAGACTCCAGTCAGCACCGAGGGCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCCTCAAGGTCACCATCACCGCCGCCCAGCCCTCGGTCGCTGAGCACGGCAACCCCACCTCCACCGCGCACGCCCGCCAGCCGcgc > 2:7127673/1‑149 (MQ=255) ggACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTg > 1:3330274/1‑151 (MQ=11) ggACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTg > 1:3877538/1‑151 (MQ=14) aaGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGccc > 1:6506271/1‑151 (MQ=17) aaGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGctc < 1:1002582/151‑3 (MQ=11) aGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa > 1:5458316/1‑151 (MQ=11) ccccggTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGa > 2:5548460/6‑151 (MQ=11) ccccggcAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAc < 2:1355849/145‑1 (MQ=14) ccAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAcc < 1:4042577/151‑1 (MQ=14) cAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGActt < 2:4185449/151‑3 (MQ=18) aGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTg > 2:6035717/1‑151 (MQ=14) gTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTga > 1:3221309/1‑150 (MQ=14) gTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTgg > 1:237941/1‑151 (MQ=14) tCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTgat > 1:7118155/1‑149 (MQ=17) tCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGActcggt > 2:3284748/1‑146 (MQ=17) tCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGt < 1:2042395/151‑1 (MQ=17) cAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTc < 1:6179724/151‑1 (MQ=11) cAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTc < 1:3058348/151‑1 (MQ=11) gCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGt < 1:4437232/151‑1 (MQ=14) gCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGt > 1:161352/1‑151 (MQ=17) ccGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAc > 2:2146355/1‑151 (MQ=14) cGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAcc < 1:3740840/151‑1 (MQ=17) cGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGAcc > 2:2840137/1‑151 (MQ=17) gaggagACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAccc > 2:4029535/1‑151 (MQ=11) gtcaCCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGa > 2:1116305/4‑151 (MQ=11) gtaaCCTACGAGCCAGGCACCGCGGGCAAGGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGAGCGTGACCCTGa < 2:6155169/148‑1 (MQ=11) gTGACCGACGAGCCAGGCACCCCGAGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGa < 1:1166422/151‑1 (MQ=14) tGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg > 2:5299121/1‑151 (MQ=1) ccGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGcaa < 1:5059931/151‑1 (MQ=17) acgaGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaa > 1:4772684/1‑151 (MQ=14) gaGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACg < 1:5987714/151‑1 (MQ=255) gaGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCGCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaatg < 2:1843153/151‑3 (MQ=14) ccAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaatgctc > 1:4534477/1‑146 (MQ=14) ccAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGctc > 2:3408366/1‑149 (MQ=14) cAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa > 2:3129124/1‑151 (MQ=1) cAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCa < 1:5164094/151‑1 (MQ=17) aGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAg > 1:5833932/1‑151 (MQ=11) aGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAg > 1:3469388/1‑151 (MQ=17) ggTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAgg > 2:2995681/1‑151 (MQ=17) caggCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCAt < 2:6311674/149‑1 (MQ=11) gggCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATc < 2:5899258/151‑1 (MQ=11) gCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCaa > 1:1284761/1‑151 (MQ=11) gCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCaa > 1:2637943/1‑151 (MQ=11) cAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAg < 1:5254558/151‑1 (MQ=14) cGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGct < 2:4315808/151‑2 (MQ=255) aGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTggc > 1:6742724/1‑150 (MQ=11) ggCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCt < 2:1982289/92‑1 (MQ=14) gCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGCCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAAGCCggcca > 2:5810788/1‑148 (MQ=11) cGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGctggcgaa > 1:6083410/1‑144 (MQ=11) gacctggtcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGaaa > 1:1467320/8‑151 (MQ=11) tatCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAAcc > 1:6591550/1‑151 (MQ=11) tggtcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAg > 2:2411080/4‑151 (MQ=14) caAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAgtgcg > 1:2930579/1‑151 (MQ=11) aaGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAgtgcgc > 1:5604685/1‑151 (MQ=255) aaGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAgtgcgc > 1:5731772/1‑151 (MQ=255) cACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGTGCGCCGTac > 1:361904/1‑151 (MQ=11) aCCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTaca < 1:2500200/151‑1 (MQ=255) ccATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTacac > 1:991708/1‑151 (MQ=255) tCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa < 2:6387461/151‑1 (MQ=11) aCCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGcgca < 1:6988852/151‑1 (MQ=11) gACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGc < 1:1935609/151‑1 (MQ=11) cttCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGa > 2:1657527/3‑151 (MQ=11) tCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATg < 1:1731523/151‑1 (MQ=11) gTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACg > 1:645182/1‑151 (MQ=11) tGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGt > 2:3664172/1‑151 (MQ=11) gccgagaACCTCAAGCCAACCTTCACCGTGCGCGTCATCCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGCGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCt < 2:5681209/148‑1 (MQ=11) agaACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCa > 1:4924539/1‑151 (MQ=11) | CAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAGGC > CP009974/1897518‑1897816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |