| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,669 | A→G | intergenic (‑5447/‑3150) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,669 | 0 | A | G | 84.8% | 3773.8 / inf | 2546 | intergenic (‑5447/‑3150) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (201/184); new base G (1093/1058); total (1302/1244) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 2557 total aligned reads displayed.
AGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAGGCCAG > CP009974/1897519‑1897819 | aggCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGAc < 2:7146044/149‑1 (MQ=14) tGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGAcc > 2:4039793/1‑151 (MQ=17) tGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGGCAAACCGAcc > 1:3734281/1‑151 (MQ=17) gCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt < 1:651273/151‑1 (MQ=9) gCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt < 2:1239119/151‑1 (MQ=17) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTc > 2:2652223/2‑151 (MQ=25) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTc > 2:2159044/2‑151 (MQ=255) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTTACCGACGAGCCAGGTACCGCCGGCCGA‑GATGGCCATAGCATCAAGGAGATCAGCACGGCGGACCAGCGCTCGGTGGCCGAGAACGTCAAACCGACCTTc < 1:4548183/150‑1 (MQ=12) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTc < 2:4634429/150‑1 (MQ=17) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTc > 1:1283288/2‑151 (MQ=21) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCAACCTTc < 2:379644/150‑1 (MQ=14) tGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTcc > 2:751997/1‑150 (MQ=17) ggAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAc < 1:2764219/151‑1 (MQ=21) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAcc < 1:5728766/151‑1 (MQ=18) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAcc < 2:1999818/151‑1 (MQ=18) aGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCgg > 2:5903656/1‑150 (MQ=18) gTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGACAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTg < 1:6902882/151‑1 (MQ=14) ttCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGc > 1:3326419/1‑151 (MQ=21) tCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCa < 1:791754/151‑1 (MQ=2) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCAc > 2:3521879/1‑151 (MQ=14) gAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACg < 1:5990646/151‑1 (MQ=2) gAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACg < 2:3405918/151‑1 (MQ=14) gAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACg > 2:3892192/1‑151 (MQ=18) aaaCCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTc > 1:5387722/1‑151 (MQ=14) aacctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCa < 1:6085196/151‑1 (MQ=18) tgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCa < 2:5820299/151‑1 (MQ=2) gaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAg > 1:2479506/1‑151 (MQ=17) gaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAg < 1:6630023/151‑1 (MQ=17) gaacctgGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAg > 1:6180937/1‑151 (MQ=14) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:873927/151‑1 (MQ=11) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 1:7221646/151‑1 (MQ=17) acctaGACAAGCCCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:5563104/151‑1 (MQ=14) ctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCCTCACCGTGCACGTCAACCAGCCGc > 2:4908581/1‑151 (MQ=11) ggACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTg < 1:494595/151‑1 (MQ=11) aCAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGc > 1:5606440/1‑151 (MQ=14) cAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGct < 2:1134472/151‑2 (MQ=11) aaGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGccc > 1:6762993/1‑151 (MQ=17) aaGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGctc < 1:1002582/151‑3 (MQ=11) aGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa < 1:3882650/151‑1 (MQ=14) aGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa > 2:1521934/1‑151 (MQ=17) aGACCCCGGTCAGCACCGAGGGAGCCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCCCCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa < 2:6466776/151‑1 (MQ=14) accccggTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACg < 1:924805/145‑1 (MQ=17) ccAGTCAGCACCGAGGTGACCGACGAGCCTGGCA‑CCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAcc < 1:4044985/151‑1 (MQ=14) gTCAGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTga > 1:3221309/1‑150 (MQ=14) gTCAACACCGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTgg > 2:447523/1‑151 (MQ=14) tCAGCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGActcggt > 2:3284748/1‑146 (MQ=17) cAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTc < 1:3058348/151‑1 (MQ=11) cAGCACCGAGGTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATc < 1:5847704/151‑1 (MQ=17) aGCACCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCg < 2:7041894/151‑1 (MQ=14) gCACCGAGGTCACCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGt > 1:161352/1‑151 (MQ=17) actaccgTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGa > 1:361156/7‑151 (MQ=11) aCCGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGa < 1:433284/151‑1 (MQ=17) taccgTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAcc > 1:2628310/5‑151 (MQ=11) cGAGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAcc < 1:5072513/151‑1 (MQ=11) cGAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAcc < 1:4649101/151‑1 (MQ=17) cGAGGTCACCGACGAGCCAGGTA‑CCCCAGGCAACGAAGGCAATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAcc < 1:2035369/151‑1 (MQ=11) gAGGTGACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGAccc > 2:6037198/1‑151 (MQ=17) aGGTGACCGACGAGCCAGGCA‑CTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCt < 1:1724499/151‑1 (MQ=11) ggTAACCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTg < 1:4455723/151‑1 (MQ=14) cgtcactgacgaGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTg < 2:434316/144‑1 (MQ=17) gtcaCCGACGAGCCAGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGa > 2:615599/4‑151 (MQ=14) gtaaCCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGa > 1:5269473/4‑151 (MQ=14) taaCCGACGAGCCAGGCA‑CCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg < 2:2991449/149‑1 (MQ=14) gacggGCGAGGTA‑CGCGGGGTAACGAAGGCGATATCGGCAAGGTCACCAGCACGGCCGACCAGACCGCGGTGGCTGAGAACGTCAAACCGGCCTTCACCGTGCACGTCAACCAGCCGCGGGCCCACGACTTGGTCGTGACCCTGAGcaaca < 2:6575891/151‑1 (MQ=14) aGCCAGGCA‑CTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGCGACCCTGAGCAACAACGc > 2:5308231/1‑151 (MQ=17) cAGGTA‑CGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa > 2:3129124/1‑151 (MQ=1) aGGTA‑CCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAg > 1:3469388/1‑151 (MQ=17) ggtcccccGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAgg < 2:4197006/145‑1 (MQ=17) ggcaccccGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAgg < 2:54182/145‑1 (MQ=14) ccccGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCAc < 1:1166232/149‑1 (MQ=11) cccGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCAcc > 1:6457664/2‑151 (MQ=11) ccGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCAccc > 2:1377456/1‑150 (MQ=14) caggCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCAt < 2:6311674/149‑1 (MQ=11) aggCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACACCGCTCAGGTCACCATc < 1:2173468/150‑1 (MQ=255) taaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAg > 1:479313/2‑151 (MQ=255) gCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGa < 2:2548207/151‑1 (MQ=11) gCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCggcga > 2:5047437/1‑148 (MQ=255) cGATATCATCAAGGTCACCATCACGCCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCCCCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGaa < 2:1010943/151‑1 (MQ=14) gacctggtcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGaaa > 1:1467320/8‑151 (MQ=11) ttggtcaAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCa < 2:6745184/147‑1 (MQ=11) ctggtcaAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCa < 2:2264231/147‑1 (MQ=255) tggtcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAg > 2:2411080/4‑151 (MQ=14) tggtcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAg > 1:7123304/4‑151 (MQ=14) tcatcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAg < 1:4190448/151‑1 (MQ=14) ggtcaAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAgc < 2:5690505/149‑1 (MQ=11) gtcaAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGACACCAgcg > 2:185563/2‑151 (MQ=11) tcaAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACACCGCTCAGGTCACCATCAAGGCCGGCGAGACCAgcgc > 1:5180581/1‑151 (MQ=14) caAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAgtgcg > 1:2930579/1‑151 (MQ=11) tCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTa > 2:1661039/1‑151 (MQ=255) aCCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGGCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGcaca > 2:5217255/1‑151 (MQ=14) cATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACAcc > 1:234123/1‑151 (MQ=11) tCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa < 2:6387461/151‑1 (MQ=11) tCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa > 1:6364019/1‑151 (MQ=1) tCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa > 1:5459087/1‑151 (MQ=255) tCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCCACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCa < 2:6895385/151‑1 (MQ=11) gACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCacgatgcgc > 1:191397/1‑146 (MQ=11) ccAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCacgatgcgcaa < 2:2838590/151‑8 (MQ=11) tGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGt > 2:3664172/1‑151 (MQ=11) cGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGat > 1:7019795/1‑150 (MQ=11) gTCAAACCAACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAGACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACg > 2:4761499/1‑151 (MQ=11) | AGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTA‑CGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAGGCCAG > CP009974/1897519‑1897819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |