BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	3,297,192	Δ1 bp	coding (157/921 nt)	RPPX_14685 ←	AraC family transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	3,297,192	0	T	.	100.0%	1332.7 / NA	249	coding (157/921 nt)	RPPX_14685	AraC family transcriptional regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (130/119); total (130/119)

Only 100 of 251 total aligned reads displayed.

CGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTG  >  CP009974/3297045‑3297337

cGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAggggggt                                                                                                                                                >  1:2779754/1‑150 (MQ=255)

   ggCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACa                                                                                                                                            >  1:3574601/1‑151 (MQ=255)

           tCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGcac                                                                                                                                    >  1:2804091/1‑151 (MQ=255)

                    aCGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGgt                                                                                                                           <  2:2402506/151‑1 (MQ=255)

                        cACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTaa                                                                                                                       >  1:1918547/1‑151 (MQ=255)

                         aCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAAc                                                                                                                      >  2:2808700/1‑151 (MQ=255)

                         aCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAAc                                                                                                                      >  2:1871599/1‑151 (MQ=255)

                            gAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCa                                                                                                                   >  1:746533/1‑151 (MQ=255)

                             aGTGGCAAGGTCACCGAAACGACCATGTACTGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCAc                                                                                                                  <  1:4727132/151‑1 (MQ=255)

                              gTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCAcc                                                                                                                 <  1:4337300/151‑1 (MQ=255)

                               tGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCa                                                                                                                >  1:2510834/1‑151 (MQ=255)

                                  cAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGt                                                                                                             <  2:3972261/151‑1 (MQ=255)

                                   aaGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTa                                                                                                            >  1:351957/1‑151 (MQ=255)

                                   aaGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTa                                                                                                            <  2:3622133/151‑1 (MQ=255)

                                    aGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTAc                                                                                                           >  1:2639438/1‑151 (MQ=255)

                                     ggTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACa                                                                                                          >  1:3976657/1‑151 (MQ=255)

                                     ggTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACa                                                                                                          <  1:5079759/151‑1 (MQ=255)

                                     ggTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACa                                                                                                          <  1:3136967/151‑1 (MQ=255)

                                     ggTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACa                                                                                                          >  2:3770876/1‑151 (MQ=255)

                                     ggTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACa                                                                                                          >  2:669852/1‑151 (MQ=255)

                                       tCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAgg                                                                                                        <  1:379192/151‑1 (MQ=255)

                                       gcACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCTGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAgg                                                                                                        <  2:5239696/150‑1 (MQ=255)

                                        cACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGt                                                                                                       <  2:321174/151‑1 (MQ=255)

                                          ccGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCa                                                                                                     <  2:765671/151‑1 (MQ=255)

                                          ccGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCa                                                                                                     >  1:1038184/1‑151 (MQ=255)

                                           cGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCAt                                                                                                    <  1:2284408/151‑1 (MQ=255)

                                            gAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATc                                                                                                   <  2:1495732/151‑1 (MQ=255)

                                             aaaCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCg                                                                                                  >  2:2439634/1‑151 (MQ=255)

                                             aaaCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCg                                                                                                  <  1:1044803/151‑1 (MQ=255)

                                              aaCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGa                                                                                                 >  1:199135/1‑151 (MQ=255)

                                               aCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGAt                                                                                                <  2:4914158/151‑1 (MQ=255)

                                                 gACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATgg                                                                                              <  1:849698/151‑1 (MQ=255)

                                                 gACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATgg                                                                                              <  1:2703209/151‑1 (MQ=255)

                                                 gACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATgg                                                                                              <  2:3259422/151‑1 (MQ=255)

                                                    cATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCg                                                                                           >  1:4039576/1‑151 (MQ=255)

                                                     aggTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGa                                                                                          <  2:2778927/149‑1 (MQ=255)

                                                           tGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg                                                                                    >  2:5364617/1‑151 (MQ=255)

                                                           tGCAGTGGGTCGTAGGCGCACTGCGCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg                                                                                    <  1:962008/151‑1 (MQ=255)

                                                            gCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTggg                                                                                   <  2:1244445/151‑1 (MQ=255)

                                                            gCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTggg                                                                                   <  2:1180347/151‑1 (MQ=255)

                                                                tGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACCGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCCTCGATGGCCGATGCCAGGCCac                                                                               >  2:3680864/1‑150 (MQ=255)

                                                                  ggTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAg                                                                             <  2:2597779/151‑1 (MQ=255)

                                                                    tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAggg                                                                           <  2:3549053/151‑1 (MQ=255)

                                                                    tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAggg                                                                           <  1:2202498/151‑1 (MQ=255)

                                                                     cGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGc                                                                          >  1:3932080/1‑151 (MQ=255)

                                                                      gTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCt                                                                         <  1:430551/151‑1 (MQ=255)

                                                                       tAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCCGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTc                                                                        >  2:2016428/1‑151 (MQ=255)

                                                                        aGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCg                                                                       >  1:647817/1‑151 (MQ=255)

                                                                           cGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGccc                                                                    >  1:4141062/1‑151 (MQ=255)

                                                                            gTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCg                                                                   <  2:3353501/151‑1 (MQ=255)

                                                                               cTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCAt                                                                <  1:3695981/151‑1 (MQ=255)

                                                                               cTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCAt                                                                <  1:1663809/151‑1 (MQ=255)

                                                                                tGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                               >  1:4494757/1‑151 (MQ=255)

                                                                                tGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                               <  1:1274342/151‑1 (MQ=255)

                                                                                tGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                               >  2:3922155/1‑151 (MQ=255)

                                                                                tGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                               >  1:2912812/1‑151 (MQ=255)

                                                                                   tCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGACCGCACATTTTCGGTGTAACGCACCAGGTACCGGTCATCGCTGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCg                                                            >  2:4079908/1‑151 (MQ=255)

                                                                                     gTCACCCAGGAACTGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGt                                                          <  1:5227150/151‑1 (MQ=255)

                                                                                     gTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGt                                                          <  2:969715/151‑1 (MQ=255)

                                                                                      tCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGtt                                                         >  1:4872752/1‑151 (MQ=255)

                                                                                       cACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTg                                                        >  2:3751348/1‑151 (MQ=255)

                                                                                       cACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTg                                                        <  1:4678700/151‑1 (MQ=255)

                                                                                       cACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTg                                                        >  1:243837/1‑151 (MQ=255)

                                                                                            aGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAg                                                   >  1:3751644/1‑151 (MQ=255)

                                                                                             ggAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGc                                                  <  1:209374/151‑1 (MQ=255)

                                                                                             ggAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGc                                                  >  2:2317209/1‑151 (MQ=255)

                                                                                             ggAACAGGCATGTGCTGCCTTGGGGAAGGATGCACAGTGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTATCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGc                                                  <  2:4245152/151‑1 (MQ=255)

                                                                                                 cAGGCTTGTGCGGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCgg                                              <  2:4386396/151‑1 (MQ=255)

                                                                                                  aGGCTTTTGCTGCCTTGGGCAAGGATGCACAGCGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGc                                             <  2:4020539/151‑1 (MQ=255)

                                                                                                   ggCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGcc                                            <  2:2344792/151‑1 (MQ=255)

                                                                                                    gCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCa                                           <  1:2313315/151‑1 (MQ=255)

                                                                                                        ttGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTc                                       >  1:1383166/1‑151 (MQ=255)

                                                                                                           ctgcCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAg                                    >  1:1131222/1‑151 (MQ=255)

                                                                                                           ctgcCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAg                                    >  1:2627029/1‑151 (MQ=255)

                                                                                                                ttGGGCAGGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCt                               <  2:1780226/151‑1 (MQ=255)

                                                                                                                ttGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCt                               <  2:2510834/151‑1 (MQ=255)

                                                                                                                ttGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCt                               <  1:4440769/151‑1 (MQ=255)

                                                                                                                 tGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTg                              <  2:453748/151‑1 (MQ=255)

                                                                                                                 tGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTg                              >  1:3371285/1‑151 (MQ=255)

                                                                                                                  gggCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGc                             >  1:1544561/1‑151 (MQ=255)

                                                                                                                   ggCAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCa                            <  2:2978497/151‑1 (MQ=255)

                                                                                                                     cAAGGATGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGt                          >  2:5085319/1‑151 (MQ=255)

                                                                                                                           tGCACAGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAgg                    <  1:9315/151‑1 (MQ=255)

                                                                                                                             cacaGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGt                  >  1:3288215/1‑151 (MQ=255)

                                                                                                                              ccaGGGCAGGCTGCGCCAGGG‑GGGTACGGAGCGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtc                 <  2:4151088/150‑1 (MQ=255)

                                                                                                                              acaGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtc                 <  1:5282388/151‑1 (MQ=255)

                                                                                                                              acaGGGCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtc                 >  1:3005014/1‑151 (MQ=255)

                                                                                                                                 gggCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggt              <  2:211077/151‑1 (MQ=255)

                                                                                                                                 gggCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggt              >  1:5432391/1‑151 (MQ=255)

                                                                                                                                   gCAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttc            <  1:534927/151‑1 (MQ=255)

                                                                                                                                   gCAAGCTCCGCCAGGG‑GGGTACACAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttc            <  1:4131943/151‑1 (MQ=255)

                                                                                                                                    cAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttcg           <  1:4606334/151‑1 (MQ=255)

                                                                                                                                    cAGGCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttcg           <  2:553192/151‑1 (MQ=255)

                                                                                                                                       gCTGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTg        >  2:5297273/1‑151 (MQ=255)

                                                                                                                                         tGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCCGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGa      >  2:1440318/1‑151 (MQ=255)

                                                                                                                                         tGCGCCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGa      >  1:871475/1‑151 (MQ=255)

                                                                                                                                            gcCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACgg   >  1:3884210/1‑150 (MQ=255)

                                                                                                                                            gcCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGt   >  1:1220028/1‑151 (MQ=255)

                                                                                                                                            gcCAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCACGCGCTGCAGTTCCCGGGTCGGCTCGGTGGACgc   >  2:2943504/1‑150 (MQ=255)

                                                                                                                                             ccAGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTg  <  1:2726788/151‑1 (MQ=255)

CGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTG  >  CP009974/3297045‑3297337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`