| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,406,966 | +T | intergenic (+325/‑1049) | RPPX_15185 → / → RPPX_15195 | chemotaxis protein CheY/peptide chain release factor 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,406,966 | 1 | . | T | 99.6% | 866.1 / ‑5.3 | 234 | intergenic (+325/‑1049) | RPPX_15185/RPPX_15195 | chemotaxis protein CheY/peptide chain release factor 2 |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base T (123/109); minor base G (1/0); total (124/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
Only 100 of 244 total aligned reads displayed.
ATCGACTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑A‑CCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTACCTGAC > CP009974/3406816‑3407110 | gtcggggtCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGac‑a < 2:4205041/144‑1 (MQ=255) tCGACTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGac‑at < 1:2820832/151‑2 (MQ=255) cGACTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGac‑atc < 1:5121431/151‑3 (MQ=255) aCTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑A‑tccc > 1:125838/1‑150 (MQ=255) aCTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑A‑tccc < 1:1975598/151‑2 (MQ=255) tCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGat > 1:1595066/1‑151 (MQ=255) ccACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGatc > 1:4698219/1‑151 (MQ=255) tCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCGAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGt > 1:4091986/1‑151 (MQ=255) gtgCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCCGGAC‑ATCCCGATCATCGTCCt > 1:2271484/1‑151 (MQ=255) gtgCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCt < 2:3681480/151‑1 (MQ=255) aCCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGCC‑ATCCCGATCATCCTCCCGTCGAc > 2:140464/1‑151 (MQ=255) ccGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCa < 1:4795402/151‑1 (MQ=255) ccGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCa < 1:506383/151‑1 (MQ=255) gCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAg > 2:728711/1‑151 (MQ=255) gCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAg < 2:4199908/151‑1 (MQ=255) aGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGa > 1:132140/1‑151 (MQ=255) gCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGAcc < 2:4509290/151‑1 (MQ=255) gCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGAcc > 1:3207045/1‑151 (MQ=255) gCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCATGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGCCCAAGGAAGAcc > 1:2458387/1‑151 (MQ=255) gTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGt > 2:329460/1‑151 (MQ=255) ggCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTg < 2:2552044/151‑1 (MQ=255) ggCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTg > 2:5216223/1‑151 (MQ=255) gcgcAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACACCCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTgg < 2:3540175/148‑1 (MQ=255) cccAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGt < 1:1827970/151‑1 (MQ=255) cccAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGt < 1:4135231/151‑1 (MQ=255) cccAGGCCATGCGCATCAAGCCGTCGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTCAGTACCGCAACAACCCGGTGACTCAGGACAA‑CCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGt < 1:3230395/151‑1 (MQ=255) ccAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTa < 2:3165187/151‑1 (MQ=255) cAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTaa > 1:1082884/1‑151 (MQ=255) cAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGCTGGTaa > 2:321333/1‑151 (MQ=255) ccATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAagag > 2:5371401/1‑151 (MQ=255) cATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAagagg > 2:2518993/1‑150 (MQ=255) gcgcATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCg < 1:2340269/151‑1 (MQ=255) cgcATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCgg < 1:839401/151‑1 (MQ=255) cATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCa > 2:1256974/1‑151 (MQ=255) cATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCa < 1:224982/151‑1 (MQ=255) tCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCAtt > 2:4626399/1‑151 (MQ=255) cAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCAttt < 2:4905704/151‑1 (MQ=255) cAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCAttt < 2:2152960/151‑1 (MQ=255) aGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTgc < 1:3366490/151‑1 (MQ=255) aGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTgc < 1:1790691/151‑1 (MQ=255) ccTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTgccg > 1:3828757/1‑151 (MQ=255) ccTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTgccg < 1:68887/151‑1 (MQ=255) cGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTCAAGAGTGCGGCATTTGCCGCCgg > 1:3763854/1‑151 (MQ=255) cGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCgg > 2:2617810/1‑151 (MQ=255) cGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCgg > 1:4459708/1‑151 (MQ=255) ggTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCggg < 1:1001782/151‑1 (MQ=255) gTCATTCTTCAGGACCTGATCATGCCTGTCCTGGACTGCTTGACCCTTGTGCGTGTGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCTTCCTGTCGACCAACGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCgggg > 2:206127/1‑151 (MQ=255) gTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCgggg < 1:2852482/151‑1 (MQ=255) tCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGc > 1:190983/1‑151 (MQ=255) tCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGc < 1:1688528/151‑1 (MQ=255) cATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGcc < 2:4594675/151‑1 (MQ=255) aTTGTTCAGGACCTGATCATGCCTGGCCTGGACGGCCTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCa < 2:3383070/151‑1 (MQ=255) aTTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCa < 2:4841058/151‑1 (MQ=255) ttcttcAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCaa < 1:5272749/151‑1 (MQ=255) tcAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGAt < 1:3348732/151‑1 (MQ=255) aCCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCt > 2:1534914/1‑151 (MQ=255) ccTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTg < 1:60377/151‑1 (MQ=255) cTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTgg < 1:3537924/151‑1 (MQ=255) tGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGt < 2:1801050/151‑1 (MQ=255) gATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCAGCCGGGGCCAACGATTACCTGGTc < 1:4863692/151‑1 (MQ=255) aTCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCa > 1:3630715/1‑151 (MQ=255) aTCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCa > 2:2053739/1‑151 (MQ=255) cATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAg > 2:63057/1‑151 (MQ=255) tGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCt < 2:405420/151‑1 (MQ=255) gcccgggctgGAGGGCTTGCCCCTGGTGCGTGAGGCCCGGACCAGCCAGGTGCCTCAGGAC‑ATCCCGATCAACGTCCTGGCGACCAAGGAAGACCCGTTGGTAAAGCGTGCGGCTGTTGCCGCCGGGGCCAACGATTACCTGGTCAAGcgg < 2:5187765/151‑3 (MQ=255) ctggcctggACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGcc > 1:909653/1‑151 (MQ=255) ctggACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGaca > 1:4713531/1‑151 (MQ=255) tggACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTg > 1:551606/1‑111 (MQ=255) tggACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGacac < 1:1333795/151‑1 (MQ=255) gcGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCAt < 2:2968565/150‑1 (MQ=255) cGGCTTGACCCTGGTGCGTGAGTACCGCAACAGCCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATc < 1:4260588/151‑1 (MQ=255) cGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGACTACCTGGTCAAGCTGCCTGGCACCATc > 2:1021973/1‑151 (MQ=255) ggCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCg > 2:4750855/1‑151 (MQ=255) ttGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGaa < 1:5300893/150‑1 (MQ=255) gACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACtg > 1:3153317/1‑151 (MQ=255) aCCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCGAGCTGCCTGACACCATCGACCtgg > 2:2489589/1‑151 (MQ=255) ccTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACtggtg > 1:3841475/1‑151 (MQ=255) gggAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCAt < 1:2769235/149‑1 (MQ=255) gTGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCAt < 2:4461360/151‑1 (MQ=255) tGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCCTCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATc > 2:4983977/1‑151 (MQ=255) tGAGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATc > 2:2581992/1‑151 (MQ=255) aGTACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCg > 1:628871/1‑151 (MQ=255) gtcacGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCTTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGt < 2:4148650/147‑1 (MQ=255) tACCGCATCAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGtt < 2:3323890/151‑1 (MQ=255) tACCGCAACAACCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGtt < 1:2668409/151‑1 (MQ=255) caacaaCCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCAc > 1:5384829/1‑151 (MQ=255) acaacCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCAccc > 2:2231679/1‑149 (MQ=255) acaacCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTc > 1:3430099/1‑151 (MQ=255) caacCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTcg < 2:123131/151‑1 (MQ=255) acCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTcgcg > 2:176130/1‑151 (MQ=255) acCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTcgcg > 2:5352347/1‑151 (MQ=255) acCCGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTcgcg > 1:2056623/1‑151 (MQ=255) ccGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCgcgcc > 1:2551164/1‑150 (MQ=255) ccGGTCGCTCAGCAC‑ATCACGATCATCGTCCTGTCGACCAAGGAAGATCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCt < 2:2460439/151‑1 (MQ=255) cGGTGACTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTc < 1:1866863/151‑1 (MQ=255) acgcAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTAcc < 1:261572/148‑1 (MQ=255) cTCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTACCt < 2:552654/151‑1 (MQ=255) tCAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTACCTg > 1:4937103/1‑151 (MQ=255) cAGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTACCTGa > 2:2877392/1‑151 (MQ=255) aGGAC‑ATCCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTCCCTGAc > 1:1553641/1‑151 (MQ=255) | ATCGACTTCCACTTCTGTGCCGACCCGCACCAGGCGGTGGCCCAGGCCATGCGCATCAAGCCTACGGTCATTCTTCAGGACCTGATCATGCCTGGCCTGGACGGCTTGACCCTGGTGCGTGAGTACCGCAACAACCCGGTGACTCAGGAC‑A‑CCCGATCATCGTCCTGTCGACCAAGGAAGACCCGTTGGTAAAGAGTGCGGCATTTGCCGCCGGGGCCAACGATTACCTGGTCAAGCTGCCTGACACCATCGAACTGGTGGCACGCATCCGTTACCACTCGCGCTCCTACCTGAC > CP009974/3406816‑3407110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |