BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	541996 =	NA (NA)	164 (0.620) +ACGCA	108/290	3.7	58.8%	intergenic (‑257/+272)	argD/RPPX_02300	acetylornithine aminotransferase/AraC family transcriptional regulator
*	?	CP009974	2545982 =	119 (0.440)	164 (0.620) +ACGCA	108/290	3.7	58.8%	intergenic (+88/‑177)	RPPX_11350/RPPX_11355	hypothetical protein/urocanate hydratase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 130 total aligned reads displayed.

ATGAATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATACCCGCCC  >  CP009974/2545833‑2546132

atgaATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgcc                                                                                                                                                       <  2:880712/151‑1 (MQ=255)

 tgaATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccg                                                                                                                                                      <  1:918363/151‑1 (MQ=255)

 tgaATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccg                                                                                                                                                      >  2:2203364/1‑151 (MQ=255)

  gaATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgc                                                                                                                                                     <  1:3384593/151‑1 (MQ=255)

   aaTTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcg                                                                                                                                                    >  2:3367741/1‑150 (MQ=255)

   aaTTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcc                                                                                                                                                    <  1:1376521/151‑1 (MQ=255)

    aTTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgccg                                                                                                                                                   >  2:2074647/1‑151 (MQ=255)

     ttGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcgcg                                                                                                                                                  >  1:4825869/1‑148 (MQ=255)

      tGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCTAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCTACCGCCGCCCCa                                                                                                                                                 >  2:466100/1‑151 (MQ=255)

      tGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcccgc                                                                                                                                                 <  1:963971/151‑4 (MQ=255)

      tGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCa                                                                                                                                                 <  2:3580564/151‑1 (MQ=255)

      tGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCa                                                                                                                                                 <  1:3199887/151‑1 (MQ=255)

       gCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcgcggg                                                                                                                                                <  2:1592847/151‑6 (MQ=255)

        cTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcgcgggc                                                                                                                                               <  2:1252712/151‑7 (MQ=255)

         tGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcccgcgcg                                                                                                                                              <  2:2147502/151‑7 (MQ=255)

          ggggCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAAc                                                                                                                                             >  2:3339264/1‑151 (MQ=255)

             gCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTa                                                                                                                                          <  1:3998876/151‑1 (MQ=255)

                 gTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcgcgggc                                                                                                                                               >  2:1700308/1‑136 (MQ=255)

                 gTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGcgccgcgcgggc                                                                                                                                               <  1:1700308/142‑7 (MQ=255)

                 gTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGcc                                                                                                                                      <  1:3879249/151‑1 (MQ=255)

                      gCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGAcc                                                                                                                                 <  1:3632267/151‑1 (MQ=255)

                        aGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCgg                                                                                                                               <  1:1586690/151‑1 (MQ=255)

                          gggCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCGGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTGAAGCCGGACCGgcg                                                                                                                             >  2:333725/1‑151 (MQ=255)

                           ggCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCCGCACTTAAGCCGGACcgccgc                                                                                                                            >  2:2426422/1‑151 (MQ=255)

                             cGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGcgctc                                                                                                                          <  1:2074647/151‑1 (MQ=255)

                              gATGCTGCCTGATCGAACTTGACGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGcgctcg                                                                                                                         >  2:4828995/1‑151 (MQ=255)

                                 gctgcCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATGTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCCCGCtt                                                                                                                      >  2:4860231/1‑151 (MQ=255)

                                   tgcCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCCTTa                                                                                                                    >  2:3678281/1‑151 (MQ=255)

                                     ccTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCg                                                                                                                                <  2:3098867/137‑1 (MQ=255)

                                     ccTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCg                                                                                                                                >  1:3098867/1‑137 (MQ=255)

                                     ccTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcc                                                                                                                  >  2:4098595/1‑151 (MQ=255)

                                      cTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAccc                                                                                                                 >  2:402653/1‑151 (MQ=255)

                                          tCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTCTAccccccc                                                                                                             >  2:3888478/1‑151 (MQ=255)

                                           cGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccccccc                                                                                                            <  1:2081169/151‑1 (MQ=255)

                                           cGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccccccc                                                                                                            >  2:2700519/1‑151 (MQ=255)

                                           cGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccccccc                                                                                                            <  1:2081760/151‑1 (MQ=255)

                                                ttGATGGGCGCAGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCACCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCaaaaa                                                                                                       <  1:466100/151‑1 (MQ=255)

                                                 tGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccc                                                                                                                >  2:2907890/1‑141 (MQ=255)

                                                 tGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccc                                                                                                                <  1:2907890/141‑1 (MQ=255)

                                                       gcgcTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTc                                                                                                <  1:3339264/151‑1 (MQ=255)

                                                          gtGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCGGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAg                                                                                             <  1:3808772/150‑1 (MQ=255)

                                                          cTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAg                                                                                             >  2:4386891/1‑151 (MQ=255)

                                                          cTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAg                                                                                             >  2:5305891/1‑151 (MQ=255)

                                                           tGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAgg                                                                                            >  2:2619513/1‑151 (MQ=255)

                                                             aaGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAACAAAAAAGTCAAGGTa                                                                                          >  2:1036216/1‑151 (MQ=255)

                                                             aaGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTa                                                                                          <  1:3501211/151‑1 (MQ=255)

                                                               ggTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAgg                                                                                        >  2:5223544/1‑151 (MQ=255)

                                                                   cGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGcgctcgc                                                                                                                        >  1:5267342/1‑115 (MQ=255)

                                                                   cGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGcgctcgc                                                                                                                        <  2:5267342/115‑1 (MQ=255)

                                                                    ggCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACgg                                                                                   >  2:2363059/1‑151 (MQ=255)

                                                                    ggCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCACCCAAAAAAAAAGTCAAGGTAGGAACgg                                                                                   <  2:3026240/151‑1 (MQ=255)

                                                                       tGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCaa                                                                                <  1:2189250/151‑1 (MQ=255)

                                                                         tAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAACAGTCAAGGTAGGGACGGCTAgg                                                                              >  2:848038/1‑151 (MQ=255)

                                                                         tAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAgg                                                                              >  2:2102665/1‑151 (MQ=255)

                                                                           gATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTGGGAACGGCAAGGTc                                                                            <  1:1066004/151‑1 (MQ=255)

                                                                            aTTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTcc                                                                           >  2:3286239/1‑151 (MQ=255)

                                                                                  ggCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAG‑‑‑CGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTAtttt                                                                  <  1:4870366/151‑1 (MQ=255)

                                                                                    cgcCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTAttt                                                                   <  1:2700519/151‑1 (MQ=255)

                                                                                      ccTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTg                                                                 <  1:5290984/151‑1 (MQ=255)

                                                                                       cTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTgg                                                                <  1:4386891/151‑1 (MQ=255)

                                                                                         gtgAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTgg                                                                >  2:5337317/1‑149 (MQ=255)

                                                                                         gtgAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGtt                                                              >  2:2493129/1‑151 (MQ=255)

                                                                                            agaTCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAg                                                                                             >  2:1826618/1‑117 (MQ=255)

                                                                                              aTCGAGGGCGGCCAGGTGTCCGCCTCGAAAGATTGTGCGCGTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGACGCTCACTTTACCCCCCCAAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCa                                                         <  2:3511438/151‑1 (MQ=255)

                                                                                                cGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAgg                                                                                        <  1:1094495/118‑1 (MQ=255)

                                                                                                cGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAgg                                                                                        >  2:1094495/1‑118 (MQ=255)

                                                                                                cGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATg                                                       <  1:5305891/151‑1 (MQ=255)

                                                                                                cGAGCGCCGCCAGGTGTCCGCCACGACACATTCTGCGCCTGTGCGAGCAAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATg                                                       <  1:2426422/151‑1 (MQ=255)

                                                                                                 gAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGc                                                      >  2:5047773/1‑151 (MQ=255)

                                                                                                  aGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCt                                                     >  2:1882335/1‑151 (MQ=255)

                                                                                                   gcgcCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCtt                                                    <  1:3286239/151‑1 (MQ=255)

                                                                                                   gcgcCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCtt                                                    <  1:2455869/151‑1 (MQ=255)

                                                                                                       cgccAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGtac                                                <  1:4098595/151‑1 (MQ=255)

                                                                                                           aGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGtacatac                                            >  2:4764205/1‑151 (MQ=255)

                                                                                                              tgtCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAg                                         >  2:1284934/1‑151 (MQ=255)

                                                                                                                tCCGCCTCGACACATTCTGCGCCTGTGAGATCGAG‑‑‑CGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTcc                                                          >  1:1560144/1‑129 (MQ=255)

                                                                                                                tCCGCCTCGACACATTCTGCGCCTGTGAGATCGAG‑‑‑CGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTcc                                                          <  2:1560144/129‑1 (MQ=255)

                                                                                                                 ccGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGGCCGATTATTTTGGTTGTCCATGACTGTACATACAAGTaa                                      >  2:5421743/1‑151 (MQ=255)

                                                                                                                  cgccgcGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTaaa                                     <  1:4860231/151‑1 (MQ=255)

                                                                                                                       cGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGgtgt                                >  2:909296/1‑151 (MQ=255)

                                                                                                                          cacaTTCTGCGCCTGAGAGACCGAGCGCCGCCGCAGAACTCAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGtt                             <  1:1456379/151‑1 (MQ=255)

                                                                                                                            caTTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGtacata                                             <  1:5288767/133‑1 (MQ=255)

                                                                                                                            caTTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTg                           <  1:1008403/151‑1 (MQ=255)

                                                                                                                            caTTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTg                           <  1:5223544/151‑1 (MQ=255)

                                                                                                                             aTTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGt                          >  2:1551933/1‑151 (MQ=255)

                                                                                                                                    gcCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGa                   >  2:2466918/1‑151 (MQ=255)

                                                                                                                                    gcCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGa                   <  1:1284934/151‑1 (MQ=255)

                                                                                                                                    gcCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGa                   <  1:1551932/151‑1 (MQ=255)

                                                                                                                                         tgAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACg              <  1:2493129/151‑1 (MQ=255)

                                                                                                                                            ggtCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACa           <  1:840123/149‑1 (MQ=255)

                                                                                                                                              ctacgcaccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATa         <  1:71099/144‑1 (MQ=255)

                                                                                                                                              ctacgcaccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATa         <  1:71769/144‑1 (MQ=255)

                                                                                                                                              ctacgcaccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATa         <  1:71554/144‑1 (MQ=255)

                                                                                                                                                gAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccccc                                                                                                              >  2:3732768/1‑48 (MQ=255)

                                                                                                                                                gAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTAcccccc                                                                                                              <  1:3732768/48‑1 (MQ=255)

                                                                                                                                                gAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGGAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATAcc       >  2:527591/1‑151 (MQ=255)

                                                                                                                                                  gcaccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGGAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATAcccg     >  1:4409212/4‑151 (MQ=255)

                                                                                                                                                   caccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACTGCAAGGTCCGATTATGTTAGTTGTCCATGCTCGTACATACAAGAAAACGTGTGTTTGTATCTTGACCACGACATAccccc    >  1:3292317/3‑149 (MQ=255)

                                                                                                                                                    accgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATAcccgcc   <  2:4314317/150‑1 (MQ=255)

                                                                                                                                                     ccgccgcAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGAAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAACTAAAGGTGTGTCTGTATAGTGACCACGACATAcccgccc  >  1:4435174/1‑151 (MQ=255)

ATGAATTGCTGGGGCTGGTTGTGCAGGGGCGATGCTGCCTGATCGAACTTGATGGGCGCTGAAGGTTCGGCTGTAGATTTTTGGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTCGACACATTCTGCGCCTGTGAGATCGAGCGCCGCCGCAGAACTTAAGCCGGACCGGCGCTCGCTTTACCCCCCCCAAAAAAAAAGTCAAGGTAGGAACGGCAAGGTCCGATTATTTTGGTTGTCCATGCTTGTACATACAAGTAAAGGTGTGTTTGTATATTGACCACGACATACCCGCCC  >  CP009974/2545833‑2546132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.