| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,756,386 | 0 | T | C | 72.8% | 877.2 / inf | 553 | intergenic (+268/+372) | RPPX_16775/RPPX_16780 | hypothetical protein/phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| Reads supporting (aligned to +/- strand): ref base T (71/79); new base C (185/217); total (257/296) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 553 total aligned reads displayed.
AGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGACTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCC > CP009974/3756237‑3756535 | gggACCCCGGAGCGGAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAAc < 2:4406700/151‑1 (MQ=255) aCCCCGGAGCGGAGCGTAGGGGCCGGATGATGGGAGCCGAGGGTTTTGGATACTTCAGCGCCGACCACAGTAACGCGCCGGAAGCGCGGAAAGGTAAATAGGGGCCGGCATCGTGAATGAATGTCTACTGGACTAGAGAGCGCAAAACGCa > 2:2692866/1‑151 (MQ=19) ccccGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaa < 1:3590785/151‑1 (MQ=255) cccGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTTCTGTGAAAGCCCACAcccccac > 2:3966161/1‑148 (MQ=25) cccGGAGCGGAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGCATGTCTACTTGATGTGAAAGCGCATAACCCaaa > 2:1947435/1‑151 (MQ=255) cGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTTGTTATTTTGTCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAg > 2:1297913/1‑151 (MQ=255) gAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCc < 1:5082881‑M1/151‑2 (MQ=255) agcgtagcgtAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTTGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGGGAAGAGGCGCCCGCATCGCGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCcc > 2:581435‑M1/1‑149 (MQ=255) agcgtagcgtAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCcc > 2:5182862‑M1/1‑149 (MQ=255) gcggagcgtaggggcCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCcca < 1:4601155‑M1/147‑4 (MQ=255) agcgtagGGGCGGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagc < 2:3682402‑M1/151‑8 (MQ=255) agcgtagGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagc > 1:5178384‑M1/1‑144 (MQ=255) agcgtagGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagc < 1:2143821‑M1/151‑8 (MQ=255) ggggCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagc < 2:499684‑M1/151‑14 (MQ=255) gatgatGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggtt > 1:4633448‑M1/1‑131 (MQ=255) gatgatGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccg > 1:493210‑M1/1‑131 (MQ=255) atgatgGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttc < 1:4835448‑M1/151‑22 (MQ=255) aGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcggg > 2:701746‑M1/1‑122 (MQ=255) gCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCCTCAGCACCGGTTc > 2:1587368/1‑151 (MQ=255) cGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgt > 2:2574052‑M1/1‑119 (MQ=255) cGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtaca < 2:4132003‑M1/151‑36 (MQ=255) ggTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatccggcgtacag > 2:3527046‑M1/1‑115 (MQ=255) gTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCgg < 1:2928636/151‑1 (MQ=255) ttttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATCGGCGCCTGCATCGTGAATGAATGTCTACTCGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTGTAGCGCCGGTTCTGACCggg > 2:3777027/1‑151 (MQ=255) ttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCg < 1:2207640/151‑1 (MQ=255) ttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCg < 1:759228/151‑1 (MQ=255) ttGGTTACTTGGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccg < 2:3128048‑M1/151‑41 (MQ=255) ggTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtt > 2:3192064‑M1/1‑109 (MQ=255) gTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgttt < 2:894724‑M1/151‑44 (MQ=255) ttACTTTGGCCACGACCAAAGTCACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttg < 1:5406780‑M1/151‑45 (MQ=255) ttACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtgtc > 2:2859068‑M1/1‑107 (MQ=255) aCTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcg > 1:2652823‑M1/1‑105 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgat < 1:4100252‑M1/151‑49 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgat > 1:873051‑M1/1‑103 (MQ=255) ttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACACAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGGTCTGATCGGGCGTACAGTCCg > 1:4769745/1‑151 (MQ=255) tGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGt > 1:1826779/1‑151 (MQ=255) ccACGACCAGAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcga < 1:1078955‑M1/151‑54 (MQ=255) cACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgac > 2:4721298‑M1/1‑97 (MQ=255) cGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGTGTACAGTCCGTTTGCGa > 2:333702/1‑151 (MQ=255) gACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGAt > 2:4765925/1‑151 (MQ=255) gACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgcc > 2:5311549‑M1/1‑94 (MQ=255) gACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgcc > 1:5247889‑M1/1‑94 (MQ=255) cAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgac > 1:2789911‑M1/1‑91 (MQ=255) acagtAGCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgact < 1:3176734‑M1/149‑62 (MQ=255) aaaGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCg > 1:4415655/1‑151 (MQ=255) aGTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactca < 1:3670239‑M1/151‑64 (MQ=255) aaCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacct > 1:3041507‑M1/1‑85 (MQ=255) aCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctt < 2:1447988‑M1/151‑68 (MQ=255) cccGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGa > 2:1357196/1‑151 (MQ=255) cccGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcaccttt > 1:1581315‑M1/1‑83 (MQ=255) ccgccgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGat > 1:2099127/1‑150 (MQ=255) ccgccgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttc > 1:1006454‑M1/1‑82 (MQ=255) ccgccgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttc < 2:2044081‑M1/151‑70 (MQ=255) cgccgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGatt > 2:4313990/1‑149 (MQ=255) gccgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccg > 1:4307473‑M1/1‑80 (MQ=255) cgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCAc > 2:3864495/1‑151 (MQ=255) cgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCAc > 1:5019189/1‑151 (MQ=255) cgGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcc > 1:233249‑M1/1‑78 (MQ=255) ggAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgccc > 2:633645‑M1/1‑77 (MQ=255) aaGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCtt < 2:1902705/151‑1 (MQ=255) aGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCttt < 1:5309151/151‑1 (MQ=255) gggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttac < 2:4538760‑M1/151‑79 (MQ=255) gggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttac > 2:2148966‑M1/1‑73 (MQ=255) ggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTcc > 2:5131558/1‑151 (MQ=255) ggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTcc < 2:1527644/151‑1 (MQ=255) ggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacg > 1:1239934‑M1/1‑72 (MQ=255) ggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacg < 1:3269907‑M1/151‑80 (MQ=255) ggCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacg > 2:1780559‑M1/1‑72 (MQ=255) gCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacgg > 1:3519030‑M1/1‑71 (MQ=255) cGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggc < 2:762369‑M1/151‑82 (MQ=255) ggAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagcttaagcgccggttctgatcgggcgtacagtccgtttgcgatggtgacgccgactcacctttccgcacttacggcg > 2:4258875‑M1/1‑69 (MQ=255) aGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtg > 1:1710369‑M1/1‑65 (MQ=255) gTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTCCGCCCTTAcg < 2:2905306/151‑1 (MQ=255) gTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtgcc > 1:3812782‑M1/1‑63 (MQ=255) aaTAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcggggcccttt > 1:45050‑M1/1‑60 (MQ=255) tAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtcccttttt < 1:1297913‑M1/151‑94 (MQ=255) gggCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTCCGCCCTTACGGCGGGt < 2:1723995/150‑1 (MQ=255) cTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtgg < 2:2739918‑M1/151‑101 (MQ=255) cTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggggcccttttgttgtgg > 2:2450126‑M1/1‑51 (MQ=255) tGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggc < 2:4067443‑M1/151‑102 (MQ=255) gttaatgaatgTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGt < 1:339635/148‑1 (MQ=255) gTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaag < 2:4633448‑M1/151‑108 (MQ=255) gTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtcccttcttttccgggccaaacg > 2:102117‑M1/1‑44 (MQ=255) gaatgaatGTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggggcctttttgtcgtggccaaaaggg > 2:4913257‑M1/1‑42 (MQ=255) atgaatgTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggac < 1:2854723‑M1/151‑112 (MQ=255) atgaatgTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggac < 1:202575‑M1/151‑112 (MQ=255) atgaatgTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggac < 2:4870105‑M1/151‑112 (MQ=255) tgaatgTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTCCGCCCTTACGGCGGGGCCCCTTTTTTTGTGGcca > 2:3034281/1‑149 (MQ=255) gaatgTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcggcgccctttttgtcgtcgcgaaaaagggcca > 2:3737409‑M1/1‑38 (MQ=255) aatgTCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggaccaa < 1:689302‑M1/151‑115 (MQ=255) tCTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcttggcaaaaagggacccaaaac > 1:2427698‑M1/1‑33 (MQ=255) cTACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggaccaaaaacc > 1:1960662‑M1/1‑32 (MQ=255) tACTTGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcggggccccttttgtcgtggcaaaaaggggccaaaaacca > 2:2233715‑M1/1‑31 (MQ=255) ttGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtcccctcctttcgttgcagaaatggaccaaaaacaatcc > 2:1205757‑M1/1‑28 (MQ=255) tGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggaccaaaaaccgtcgg < 1:2506793‑M1/151‑125 (MQ=255) tGATGTGAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcggggccctttttgtcgtggcaaaaaggggccaaaaaccggcgg > 1:4191563‑M1/1‑27 (MQ=255) gATGTGAAAGCGCATAACCCAAGAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGATTCACCTTTCCGCCCTTACGGCGGGCCCCCCCTTGTCGGGCCAAAAAAGGTGCaaaa > 2:4825740/1‑151 (MQ=255) gtgAAAGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggaccaaaaaccgtcggctcc < 1:1486542‑M1/151‑129 (MQ=255) aaGCGCACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaagggaccaaaaaccgtcggctcccatc < 1:948156‑M1/151‑133 (MQ=255) gcACAACCCAAAAGCccaaagctttagcgccggttctgatcgggcgtacagtccgtttgcgatggcgacgccgactcacctttccgcccttacggcgggtccccttttttcgtggcaaaaagggaccaaaaaccgtcggctcccatcatcc > 1:3952328‑M1/1‑15 (MQ=255) | AGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCATAACCCAAAAGCTCAAAAACTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGATGGCGACGCCGACTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCC > CP009974/3756237‑3756535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |