Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099743,771,8830A.69.9% 326.3 / 281.3 174noncoding (76/76 nt)RPPX_16845tRNA‑Glu
Reads supporting (aligned to +/- strand):  ref base A (26/26);  new base . (49/72);  total (75/99)
Fisher's exact test for biased strand distribution p-value = 3.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.47e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 185 total aligned reads displayed.

TGCGCGCCACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCAAGATCTACAGAGTTCCATGAGATTCTGTAAATCCTCGAAAACAGACGCTTCGGCGTCTTT  >  CP009974/3771733‑3772027
                                                                                                                                                      |                                                                                                                                                 
tGCGCGCCACTTGCAGAGTAAAACACACAGCGCAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACCGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCa                                                                                                                                                   <  2:5029821/151‑1 (MQ=255)
  cgcgcAACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCaat                                                                                                                                                 <  1:1341900/151‑2 (MQ=255)
   gcgcCACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCaatg                                                                                                                                                <  1:43218/151‑3 (MQ=255)
    cgcCACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCaatgc                                                                                                                                               <  1:386631/151‑4 (MQ=255)
       gaggtggaGCGTGAAGCTCACGGCGGAACGGGGCAGGGAGTGAAAGCAGGCAGTGATGCGAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCgg                                                                                                                                            <  2:4804264/144‑1 (MQ=21)
       cACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCggg                                                                                                                                           <  1:3494457/151‑1 (MQ=255)
        aCTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGa                                                                                                                                          <  1:1351743/151‑1 (MQ=255)
         cTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGCaa                                                                                                                                         >  1:4449683/1‑151 (MQ=255)
           tGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATa                                                                                                                                       >  1:418472/1‑151 (MQ=255)
             cAGCGTAAAGCACACAGCGGAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGc                                                                                                                                     <  1:1547185/151‑1 (MQ=255)
              aGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGcc                                                                                                                                    >  2:3789842/1‑150 (MQ=255)
               gCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTc                                                                                                                                   >  1:2734057/1‑151 (MQ=255)
               gCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTc                                                                                                                                   <  2:4434675/151‑1 (MQ=255)
                 gTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAg                                                                                                                                 >  1:4799769/1‑151 (MQ=255)
                  tAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGt                                                                                                                                >  2:248168/1‑151 (MQ=255)
                    aaGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCtaggtg                                                                                                                               >  2:1177460/1‑146 (MQ=255)
                     aGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTgg                                                                                                                             <  2:421050/151‑1 (MQ=255)
                       cacacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTCGGTa                                                                                                                           >  1:1640368/1‑151 (MQ=255)
                       cacacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCGTAGGTGGTa                                                                                                                           >  2:773034/1‑151 (MQ=255)
                         cacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTaga                                                                                                                         <  1:2251777/151‑1 (MQ=255)
                         cacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTaga                                                                                                                         <  2:1518985/151‑1 (MQ=255)
                         cacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTaga                                                                                                                         <  2:1518790/151‑1 (MQ=255)
                         cacaGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTaga                                                                                                                         <  1:5168727/151‑1 (MQ=255)
                           caGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGc                                                                                                                       <  2:3163071/151‑1 (MQ=255)
                           caGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGc                                                                                                                       >  1:2331566/1‑151 (MQ=255)
                                   gcgtggggggAGTGATCGCAGGCAGTAATGCGAGCAGTGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCt                                                                                                                <  2:1969948/144‑1 (MQ=21)
                                   cgcgGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt                                                                                                               <  1:884328/151‑1 (MQ=255)
                                   cgcgGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCCAGAACGGATGAGTTGGTAGAGCGCGAcgtg                                                                                                               >  2:680564/1‑148 (MQ=18)
                                    gcgGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTg                                                                                                              <  1:5235084/151‑1 (MQ=255)
                                    gcgGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGGTGGTAGAGCACGACCTTg                                                                                                              >  1:33808/1‑151 (MQ=255)
                                        gggggAGTGAAAGGGGGCAGTAAAGACAGGAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCa                                                                                                           <  2:395299/149‑1 (MQ=25)
                                        cAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa                                                                                                          <  2:3487331/151‑1 (MQ=255)
                                        cAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa                                                                                                          >  2:585836/1‑151 (MQ=255)
                                        cAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa                                                                                                          >  1:3041114/1‑151 (MQ=255)
                                         aGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa                                                                                                          <  1:4067716/151‑1 (MQ=255)
                                         aGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg                                                                                                         >  2:3999627/1‑151 (MQ=255)
                                         aGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg                                                                                                         <  2:2319162/151‑1 (MQ=255)
                                          gggAGTAAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCACTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGTGACGCC‑AATGCGGGAATAGCTCAGTTAGTAGAGCACGACCTTGCCAAgg                                                                                                        <  1:634525/151‑1 (MQ=25)
                                             ggTGAAAGCAGGGAGTAATGCCAGCAGCGTGTCCCCGTCGTGTAGTGGCCGAGGACACCGCCGTTTCACGGCGGTAAGAGGGGGTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                                                                                                     <  1:1537305/150‑1 (MQ=38)
                                              gTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgg                                                                                                    >  1:58279/1‑151 (MQ=255)
                                                gAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGGATAGCCCCGTTGGGAGGGGCAGACCCTTCCCAGGTCcggg                                                                                                  >  1:321271/1‑151 (MQ=17)
                                                 aaaGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGt                                                                                                 >  1:561861/1‑151 (MQ=255)
                                                  aaGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtt                                                                                                >  1:2961691/1‑150 (MQ=255)
                                                      aggcagTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAATGGCGGGAGTGGCCCGGTGGGTGGGGCACGACCTGGCCAGGGTCggggcgggg                                                                                             >  2:3303166/1‑146 (MQ=18)
                                                         cagTAATGCCGGCAGTGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGGCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt                                                                                          <  2:3094030/151‑1 (MQ=255)
                                                         cagTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt                                                                                          >  1:3406831/1‑151 (MQ=255)
                                                         cagTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGtt                                                                                         <  2:2375329/151‑1 (MQ=255)
                                                          agTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                                        <  1:2526252/151‑1 (MQ=255)
                                                              aTGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑Gt                                                                                   <  2:3115895/151‑1 (MQ=255)
                                                               tGCCAGCAGCGTGTCCCCTTCGTCTAGGGGGCTAGGACGCCGCCCTGGCACGGCGGTAACAGGGGTTCGAGTGCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑Gtc                                                                                  <  1:4037999/151‑1 (MQ=25)
                                                                gCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑Gtct                                                                                 <  2:598003/151‑1 (MQ=255)
                                                                  cagcagCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg                                                                                           >  1:4244145/1‑140 (MQ=255)
                                                                   ggcagcGTGTCCGCTTCGTCTAGTGGCCTAGGACACCGCGCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGt                                                                              <  2:4431203/150‑1 (MQ=255)
                                                                    gcagcGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGt                                                                              <  1:2525447/151‑1 (MQ=255)
                                                                     caggttgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGttt                                                                            <  2:4054870/146‑1 (MQ=255)
                                                                     cagcGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGttt                                                                            <  1:2332675/151‑1 (MQ=255)
                                                                     cagcGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGttt                                                                            <  2:43261/151‑1 (MQ=255)
                                                                      agcGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTc                                                                           >  1:365126/1‑151 (MQ=255)
                                                                       gcGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGGATAGCCCAGGTGGTAGGGCACGGCCCTGCCAAGGTCGGGGGGGCGAGGTCGA‑GGCTCGGTTcc                                                                          >  2:2755866/1‑151 (MQ=18)
                                                                        tgtgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTcc                                                                          >  2:1478718/2‑151 (MQ=255)
                                                                         gtgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAA‑GCGGGAATAGCTCCGGTGGTAGAACACGACCCTGCCAAGGGCGGGGGCGCGGGGTCGG‑GTCTCGTTTtccc                                                                        >  2:716649/1‑150 (MQ=18)
                                                                         gtgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        <  1:4598219/151‑1 (MQ=255)
                                                                         gtgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        <  1:3999627/151‑1 (MQ=255)
                                                                          tgtCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        >  2:1309346/1‑151 (MQ=255)
                                                                           gtCCCCTTCGTCTAGGGGCCTAGGAAACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGAC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCt                                                                      <  2:1190420/151‑1 (MQ=255)
                                                                            tCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCt                                                                      <  1:2961053/151‑1 (MQ=255)
                                                                             ccccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTcc                                                                    <  1:3358432/151‑1 (MQ=255)
                                                                              cccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCa                                                                   >  1:413587/1‑151 (MQ=255)
                                                                              cccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCa                                                                   <  2:5222880/151‑1 (MQ=255)
                                                                              cccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCa                                                                   <  1:5046920/151‑1 (MQ=255)
                                                                               ccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTcc                                                                    >  1:5243766/1‑150 (MQ=255)
                                                                               ccTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTcc                                                                    <  2:5243766/150‑1 (MQ=255)
                                                                                cTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCag                                                                  <  1:1217775/151‑2 (MQ=255)
                                                                                cTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagt                                                                 <  2:4405937/151‑3 (MQ=255)
                                                                                cTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagt                                                                 <  2:413587/151‑3 (MQ=255)
                                                                                 ttCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTGCagg                                                                 >  2:3370418/1‑149 (MQ=255)
                                                                                   cGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAAtt                                                               >  2:541431/1‑150 (MQ=255)
                                                                                    gTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagttta                                                              >  1:4484422/1‑146 (MQ=255)
                                                                                    gTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttct                                                             >  1:3778687/1‑145 (MQ=255)
                                                                                    gTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttct                                                             <  2:3604631/151‑7 (MQ=255)
                                                                                    gTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCCCCGGTGGGAGGGCACGGCCTTGCCCAGGGCGGGGTCGCGGGTTCGAGGTCCCG‑TTCCCGCCCCaagtttt                                                             >  1:2277641/1‑146 (MQ=17)
                                                                                     tCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttctc                                                            <  1:3285287/151‑8 (MQ=255)
                                                                                     tCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGGCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttcta                                                            >  1:1949888/1‑144 (MQ=255)
                                                                                      cTAGTGGCGTAGGGCACCGGCGTTGCACGGCGGGAACAGGGGTTCGAGTCGCCGAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCAAg                                                            <  2:1936223/151‑1 (MQ=21)
                                                                                      cTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttaaa                                                            >  2:5338732/1‑144 (MQ=255)
                                                                                      cTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCagtttaaa                                                            >  1:3308001/1‑144 (MQ=255)
                                                                                      cTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCaaa                                                            >  1:3948739/1‑150 (MQ=255)
                                                                                       tAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                                                                                                     <  2:1201521/109‑1 (MQ=255)
                                                                                       tAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                                                                                                     >  1:1201521/1‑109 (MQ=255)
                                                                                       tAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGTGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTcc                                                                    >  1:1387203/1‑141 (MQ=255)
                                                                                                 ggACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATTAAATTCTACAGCGt                                                 >  2:2200841/1‑151 (MQ=255)
                                                                                                                   gcggTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTccc                                                                         <  1:1025829/109‑1 (MQ=255)
                                                                                                                   gcggTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTccc                                                                         >  2:1025829/1‑109 (MQ=255)
                                                                                                                          cAGGGGTTCGAGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCCCGTTTTCCGCTCCAAATTAAAATCTTCAGAGTTTCCTGAGGTTTCGGAAATTCTCGaa                       >  2:1889980/1‑151 (MQ=18)
                                                                                                                             gggTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg                                                                                                   >  2:2833400/1‑74 (MQ=255)
                                                                                                                                    aGTCCCCTAGGGGACGCC‑AATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        >  2:137135/1‑92 (MQ=255)
                                                                                                                                              gggACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        >  2:130130/1‑83 (MQ=255)
                                                                                                                                              gggACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCg                                                                        <  1:130323/83‑1 (MQ=255)
                                                                                                                                                gACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCAAGATCTACAGAGTTCCATGAGATTCTGTAAATCCTCGAAAACAGACGCTTCGGCGTCttt  <  2:484671/151‑1 (MQ=255)
                                                                                                                                                gACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCAAATACTACAGAGTTCCTTCAGATTCTGGAAATTCTCGAAAACAAACGCTTTGGCGTCttt  >  1:2903551/1‑151 (MQ=18)
                                                                                                                                                      |                                                                                                                                                 
TGCGCGCCACTTGCAGCGTAAAGCACACAGCGAAACGCGGCAGGGAGTGAAAGCAGGCAGTAATGCCAGCAGCGTGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGA‑GTCTCGTTTCCCGCTCCAAATCAAGATCTACAGAGTTCCATGAGATTCTGTAAATCCTCGAAAACAGACGCTTCGGCGTCTTT  >  CP009974/3771733‑3772027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑