Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009974 | 5,105,300 | 0 | A | G | 68.8% | ‑4.0 / 22.4 | 32 | D184D (GAT→GAC) | RPPX_22650 | benzene 1,2‑dioxygenase |
Reads supporting (aligned to +/- strand): ref base A (2/8); new base G (10/12); total (12/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.48e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCAGCGTAGTTCCAGTGCACGGAGCTTACGTGGTAGCCGTCGGCGCCGTTTTCGGCGGTGAGCTTCCAGTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGCTG > CP009974/5105172‑5105450 | gcggCGTAGTTCCAGTGCCCGGAGCTAACATGATAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCt < 2:3388715/148‑1 (MQ=1) gcggCGTAGTTCCAGTGCACGGAGCTAACATGATAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCt < 1:2752582/148‑1 (MQ=1) gcggCGTAGTTCCAGTGCACGGAGCTAACATGATAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGCCCGGCCACTGGTCGACGATAAAGTCgatgaaca > 1:2745373/4‑148 (MQ=0) gcccGGAGCTAACATGATAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGTGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAg > 2:1312771/4‑151 (MQ=1) cagggAGCTTACGTGGTAGCCGTCGGCGCCGTTTTCGGCGGTGAGCTTCCAGTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAgg < 2:658084/148‑1 (MQ=1) gcggggTAGCCGGCGGCGCCGTTTTCGGCGGTGAGCTTCCAGTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCa < 2:2002866/147‑1 (MQ=1) catgatAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAg < 2:1675110/146‑1 (MQ=1) atgatAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGt > 1:1351653/5‑151 (MQ=1) tgctAGCCGTGGGCGCCGTGCTCGGCGGTCAGCGTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTg < 2:5319793/148‑1 (MQ=1) tgatAGCCGTCGGCGCCGTTCTCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTg < 2:2099453/148‑1 (MQ=1) ttctCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCa > 2:668889/4‑151 (MQ=1) ttctCGGCGGTCAGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCa < 2:3818708/148‑1 (MQ=1) ttctCGGCGGTCAGCTTCCAGTCACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTTGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCa < 2:5234826/148‑1 (MQ=1) gtcaGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCaa < 1:2997544/148‑1 (MQ=1) gtcaGCTTCCAGTTACCTTCGTAGATGTAGGAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCaa > 2:2566899/4‑151 (MQ=1) gTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGccc < 2:2449157/151‑1 (MQ=1) gTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGccc < 2:2447120/151‑1 (MQ=1) taggAGCTAGCTCCACGCAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATc < 2:1263687/148‑1 (MQ=1) ctccacgcAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTTCCACCtt > 2:1941651/6‑151 (MQ=1) ctccacgcAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCtt > 1:2652791/6‑151 (MQ=1) tccacgcAGCACTTCCAGGCGGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTg < 2:3053862/147‑1 (MQ=1) tccacgcAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTg > 1:3908769/5‑151 (MQ=1) ccacgcAGCACTTCCAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTgg > 1:3929407/4‑151 (MQ=1) ggacgtCCGGGCCTCCAGGCGACTGATCGACGATCATGGCGATGACCTTCGCCGCCCCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTAAGGATGAAGAAAAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTc < 2:2219530/146‑1 (MQ=0) gcgctgccAGACCGTCCGGCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTGGTCAGGTc < 2:3610142/145‑1 (MQ=1) gtccggCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCg < 2:3314535/147‑1 (MQ=1) tccggCGACTGGTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGGTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGACTCGTGCCACCTTGGTCAGGGCGTGGGAGCCGTCGc > 2:5211982/4‑151 (MQ=1) tGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGc < 1:3954260/151‑1 (MQ=11) tGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGc > 2:3165189/1‑151 (MQ=11) tGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGc < 1:4700014/151‑1 (MQ=11) tGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGc < 2:1751245/151‑1 (MQ=11) gATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGCt > 1:2442686/1‑151 (MQ=11) aTCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGCGGCTTCACATCGGCGTTCAGGCTGCCGAACAAAAAGCCCCGGTACGACTCAAAACGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGCTg < 1:812696/151‑1 (MQ=11) | GCAGCGTAGTTCCAGTGCACGGAGCTTACGTGGTAGCCGTCGGCGCCGTTTTCGGCGGTGAGCTTCCAGTTGCCTTCGTAGATGTACGAGCTGGCACCGCGCAGCACTTCCAGGCCTTCAGGCGACTGATCGACGATCATGTCGATGATCTTCGCCGACTCGCCCAGGTGCTCGACCAGTGGTTTCACATCGGCATTCAGACTGCCAAACAGGAAGCCCCGGTACGACTCGAATCGTGCCACCTTGGTCAGGTCGTGGGAGCCGTCGCAGTTGAAGCTG > CP009974/5105172‑5105450 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |