| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,910,161 | T→C | intergenic (+65/‑594) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,910,161 | 0 | T | C | 87.2% | 757.2 / 66.2 | 308 | intergenic (+65/‑594) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base T (7/32); new base C (95/172); total (102/206) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.98e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01 | |||||||||||
Only 100 of 321 total aligned reads displayed.
GTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910014‑2910311 | gTGCGAGGGATGACATCGTGGCGATGCAGTTCCTGAGTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCACGCCTGCTCCTACATCAACCGGTGGTGTCGCCCCACAACGTCGTa < 1:2419529/151‑1 (MQ=255) ggcgGGAGGACGGCGTGGCGATGCAGTTCCTGATTCCGGGTCGGAGCCTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCGAGCCCGCTCCTACACCCACCGGTGGTGTCGCCCCACACCGTCGTAGGa < 2:848611/150‑1 (MQ=255) cgcgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAggg > 1:80245/1‑150 (MQ=255) cgcgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGa > 1:4247372/1‑151 (MQ=255) gcgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAg < 2:3057205/151‑1 (MQ=255) cgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGc < 1:2925590/151‑1 (MQ=255) ggATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCgg < 1:4093072/151‑1 (MQ=255) tGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGtt < 1:4965724/151‑1 (MQ=255) aCAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCa < 1:3482901/151‑1 (MQ=255) aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc > 2:3820406/1‑151 (MQ=255) gCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAccc > 1:1006552/1‑151 (MQ=255) tGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcgcg > 1:4015800/1‑151 (MQ=255) ggCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGa > 1:2142352/1‑151 (MQ=255) cGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAAt > 1:3851966/1‑151 (MQ=255) cGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAAt > 1:3677643/1‑151 (MQ=255) ttGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAg < 2:3235143/150‑1 (MQ=255) aTGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAg < 2:2630796/151‑1 (MQ=255) tGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTTACCCGCGAATAgg > 1:5225575/1‑151 (MQ=255) ggTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 2:1932301/150‑1 (MQ=255) tGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:4175612/151‑1 (MQ=255) ttCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccg < 2:5306114/151‑1 (MQ=255) ttCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccg < 2:1726576/151‑1 (MQ=255) tCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc > 1:2623188/1‑151 (MQ=255) ccGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 2:2583410/1‑151 (MQ=255) ccGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 1:2516516/1‑151 (MQ=255) ttGAAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa < 2:3368745/151‑1 (MQ=255) tGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc < 1:1643510/151‑1 (MQ=255) ggCTTCGATAGCAAACGGCCGTGGCTGGTGCGTTGAGGCTGCGAGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcctc < 2:3478662/150‑3 (MQ=37) gCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc > 2:1813615/1‑151 (MQ=255) cTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCa < 2:2567038/151‑1 (MQ=255) cTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa > 2:2784201/1‑151 (MQ=255) tAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCACTCCTACATCAACCGGTGGTGTCGCCCCACACGGTCGTAGGGGCGGGTTCACCCGCGAATAGGCCGGACGTGACGCCCCATACCTCCAGTcgtc > 1:448378/1‑148 (MQ=38) aCAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCa > 1:5249706/1‑151 (MQ=255) aaaCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCACCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAcc < 1:4155815/151‑1 (MQ=255) caCGGCCTTGCCGGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCCCTCCTACCTCGGACGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCGGCCTAATACCTCCCGTCGTTCAccg < 2:3789102/150‑1 (MQ=25) aCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgc > 2:513077/1‑151 (MQ=255) cGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgcc < 1:3328114/151‑1 (MQ=255) ccTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCa < 1:1561397/151‑1 (MQ=255) tGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCTCCCAACACCTCCGGTGACTCACCGACGCAcca > 2:375753/1‑150 (MQ=37) cTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGcc < 2:5342149/151‑1 (MQ=255) ggTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCAc < 1:2694878/151‑1 (MQ=255) tGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATtc < 2:2020117/151‑1 (MQ=255) cctgggCCCCCTCGCGGGCCCGCCCGCGCCTACATCAACCGGCGGTGTCGCCCCGCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAAt < 2:4398974/148‑1 (MQ=18) gggCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCgg < 1:208033/151‑1 (MQ=255) ggCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGc < 1:4836595/151‑1 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAcc < 1:562033/151‑1 (MQ=255) tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccg > 2:4934677/1‑150 (MQ=255) tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCGCCCGTCAGTCCCCACCGCACCCCCCAACTCACTCATCACTCGCCCCCa > 1:437045/1‑151 (MQ=21) ctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgt < 1:305795/151‑3 (MQ=255) cggcgGGCCAGCCCCCTCATTCATCAACCGGCGCCGTCGCCCCGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCg < 2:1006552/149‑1 (MQ=14) gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc > 1:338949/1‑151 (MQ=255) ggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACg < 1:1813615/151‑1 (MQ=255) gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt < 2:620562/151‑2 (MQ=25) cAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgta < 2:1019850/151‑3 (MQ=21) aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAc > 1:3499489/1‑59 (MQ=255) aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAc < 1:4934467/151‑1 (MQ=21) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCTCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAACTGCCGCCCAATACCCTCAGTTATTCACCGCCGCACCCGCCACCGCAATCATTAATCGGCACCGTCGCCACGGAccc > 1:2255388/1‑151 (MQ=21) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:2255523/145‑1 (MQ=255) ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGtt < 2:4618814/151‑1 (MQ=21) gCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt < 2:1407313/151‑1 (MQ=21) cattcATCAATCGGCGCCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg < 2:2441377/147‑1 (MQ=14) tACATCAATCGGCACCGTCGCCCCGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg < 2:4092270/151‑1 (MQ=14) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGtt > 1:907094/1‑43 (MQ=255) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGtt < 2:907094/43‑1 (MQ=255) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg < 1:1363448/151‑1 (MQ=21) aTCAACCTGTGGTGTCGCCCCAGACCGTCGTATGAGCGGGTTCACCCGCGAATAGGCCGTACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCgg < 1:3018879/151‑1 (MQ=21) aTCAACCGGCGCCGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCgg < 2:3959464/151‑1 (MQ=17) aTCAACCGGCGCCGTCGCCACGCACCGTCGTCGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCgg < 2:1499127/151‑1 (MQ=17) tCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCggg < 1:3233024/151‑1 (MQ=21) tCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCggg > 1:3207130/1‑151 (MQ=255) cccGGGGGGGTCGCCCCACACCGTCGTAGGGGCGGGATCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTc < 2:4780183/150‑1 (MQ=18) aCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTc < 2:2933116/151‑1 (MQ=21) cggcaccgtCGCCGCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAc < 2:355570/144‑1 (MQ=18) cGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAc < 2:4015800/151‑1 (MQ=21) gtaccgtCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc < 2:3171937/146‑1 (MQ=18) ggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgc < 1:3978710/151‑1 (MQ=21) ggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCcgc < 2:3526593/151‑1 (MQ=255) accgtCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCcgc < 1:5097451/148‑1 (MQ=18) gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGaa < 2:1621387/151‑1 (MQ=21) gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCTCCTTGTAGGa > 1:5321536/1‑134 (MQ=18) gcGCCCCAGACCGGGGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAAt < 1:601223/150‑1 (MQ=21) gCCCCACACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 2:76317/51‑1 (MQ=255) ccccccGCCGTCGTAGGACCTGCTCCACCCGCGAATAGTCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGGCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAgg < 2:4159068/151‑1 (MQ=21) ccacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAc > 1:818058/7‑140 (MQ=18) aggtacCGTTGTAGCAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCCTCAATCGGCACCGTCGCCACGCCCCCTTGTAGGGGCGGGTTCACCCGCGAATAGGcc < 1:3554657/147‑1 (MQ=21) cgttccGTTCTAGGAGCCGGCCCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 1:248601/147‑1 (MQ=21) cacaCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 2:126681/151‑1 (MQ=21) cacaCCGTCATAGGAGCGGGTTCACCCGCGATTAGGCTGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 2:4247372/151‑1 (MQ=21) gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:1964533/149‑1 (MQ=255) acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:3148183/151‑1 (MQ=21) acacCATCGTAGGAGCGGATTCACCAACGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:648463/151‑1 (MQ=21) acCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAc < 2:114104/151‑1 (MQ=21) acCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAc < 1:4578662/151‑1 (MQ=255) cccttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 2:2512570/148‑1 (MQ=255) ccGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:1735438/151‑1 (MQ=21) ccGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:2784201/151‑1 (MQ=255) cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:5037186/151‑1 (MQ=21) cGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAc < 1:4886494/99‑1 (MQ=255) cttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:239950/150‑1 (MQ=255) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCGTGTAGGAGCGGGTGCACCCGCGAAGAGGCCGGACCTgcc > 2:2155684/1‑151 (MQ=21) | GTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910014‑2910311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |