| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,910,258 | A→G | intergenic (+162/‑497) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,910,258 | 0 | A | G | 88.5% | 1012.4 / 96.9 | 459 | intergenic (+162/‑497) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (27/25); new base G (159/240); total (191/268) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 460 total aligned reads displayed.
TCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910108‑2910405 | tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCGCCCGTCAGTCCCCACCGCAC‑CCCCCAACTCACTCATCACTCGCCCCCa > 1:437045/1‑151 (MQ=21) cccgcgcgCACGCCCGCGCCTACATCAACCGGCGCCGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc < 2:3131031/149‑1 (MQ=18) gggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:2263887/151‑1 (MQ=255) gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt > 2:1523918/1‑150 (MQ=255) aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCAc > 1:3780742/1‑151 (MQ=255) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCTCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAACTGCCGCCCAATACCCTCAGTTATTCACCGCCGCAC‑CCGCCACCGCAATCATTAATCGGCACCGTCGCCACGGAccc > 1:2255388/1‑151 (MQ=21) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCGC‑CCGCCACCGCAGTCATCAATCGGCACCGTCGCCacccaccc > 2:5425428/1‑151 (MQ=25) cattcATCAATCGGCGCCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg < 2:2441377/147‑1 (MQ=14) cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGa > 1:56625/1‑151 (MQ=21) ttcATCAACCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg < 1:2677347/149‑1 (MQ=14) tACATCAATCGGCACCGTCGCCCCGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg < 2:4092270/151‑1 (MQ=14) ggcaccgtCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAcc < 1:322724/145‑1 (MQ=17) cgtCGCCCCGTTCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGa < 2:3550533/150‑1 (MQ=21) gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGaa < 2:1621387/151‑1 (MQ=21) gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCTCCTTGTAGGa > 1:5321536/1‑134 (MQ=18) tCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTCGGAGCGGGTTCACCCGCGAAt < 1:601292/151‑1 (MQ=21) ccgagagcGTTGTAGGGGGGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGGCGTTCACCGCCGCAC‑CCGCCACCGCATGCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 2:789226/144‑1 (MQ=21) cacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGCGCGGGTTCACCCGCGAATAGGc > 1:4854016/5‑151 (MQ=18) ccACGCCGTCGGAGGAGCGGGTGCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:3779981/151‑1 (MQ=21) cgttccGTTCTAGGAGCCGGCCCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 1:248601/147‑1 (MQ=21) cacaCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 1:4952020/151‑1 (MQ=21) cacaCCGTCATAGGAGCGGGTTCACCCGCGATTAGGCTGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 2:4247372/151‑1 (MQ=21) acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:1451120/151‑1 (MQ=21) cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa < 1:2942997/151‑1 (MQ=21) cccttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 2:2512570/148‑1 (MQ=255) ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc > 1:959873/1‑151 (MQ=255) cgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 2:4466249/150‑1 (MQ=21) agTAGGAGCGGGTTCTCCCGCGAATAGGCCGCACCTGCCGCCCAATCCCTCCAGTCATTCACCGCCGCAC‑CCGCCCCCGCATTCATCAATCGGCGCCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:1974476/150‑1 (MQ=21) tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCGCCCTTGTAGGAGCGGGTTCACCCGCGAATACGCCGGACCTgccgc > 1:3939291/1‑151 (MQ=255) tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 1:3080990/151‑1 (MQ=255) ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc < 1:1375280/96‑1 (MQ=255) ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc > 2:1375280/1‑96 (MQ=255) gAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAAACGGCACCGTCGCCACGTACCGTTGTAGGCGCGGGCTCACCCGCGAATAGGCCGGACCTGCCGCCCa > 1:2096927/1‑151 (MQ=21) gAGCGGGTGCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa < 2:1131766/151‑1 (MQ=25) gAGCGCGTTCTCTCGCGAATAGGCCCGACCACCCGCGAGATCCCCACTCTCACCCACCGCCGCGCTCTTCC‑GCTCTTTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa < 2:5103290/151‑1 (MQ=12) ggCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCaa < 2:3491026/150‑1 (MQ=25) aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt > 1:1094746/1‑109 (MQ=17) aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAACCGGCACCATCGCCACGCACCCTTGCCGGAGGGGGGTCACCCGCGAAAAGGCAGGCCCAgccgccaca > 2:3660838/1‑148 (MQ=21) aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCggg < 1:1838300/118‑1 (MQ=18) gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:1774836/151‑1 (MQ=25) cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCAccc < 2:1974742/123‑1 (MQ=255) ggTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg > 1:2217217/1‑108 (MQ=18) aCCCGCGAATAGGGCGGTCGTGCCGCCCAATACCCCCAGTCGTTCACCGCCGCAC‑CTGCCACCGCATTCATCAACCGGCAGCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAg < 2:4856514/151‑1 (MQ=25) cccGCGAATAGGCCGGACCTGCCGCCCAATGCCTCCAGTCCTTCAACGCCGCCC‑CCGCCACCGCATTCATCAATCGGCAGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGt < 2:166167/151‑1 (MQ=21) gagAATAGGCCGCACCTGCCGCCCAATGCCTCCAGTCATCCCCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAt < 2:683437/149‑1 (MQ=21) gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTCCCGCCCAATACCCCCCGTCATTc > 1:802683/1‑151 (MQ=37) aTAGGCCGGACCTGCCGCCCAATACCGCCAGTCATCCCCCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc < 2:4638534/151‑1 (MQ=21) aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGc < 1:1639846/84‑1 (MQ=255) aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc < 1:1679859/151‑1 (MQ=255) aGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg < 1:72350/151‑1 (MQ=25) ggCCGGACCCGCCGCCCACTACCCCCAGTCCCTCCCCGCCGCAC‑CCGCCACCGCATTCATCAACCGGCGGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCgc < 2:2158335/151‑2 (MQ=17) gCCGGACCTGCCGCCCGATACCTCCACTCAATCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCgcc < 1:482022/151‑3 (MQ=21) ccGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgccg < 2:2981153/151‑1 (MQ=25) ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCg > 1:3767045/1‑151 (MQ=255) gACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAc < 1:4011610/151‑1 (MQ=21) cTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGt > 2:3880392/1‑91 (MQ=255) gccgccCAATACCTCCGGTCATCCCCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCAGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc < 2:2625384/151‑1 (MQ=18) gccgccCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc < 1:2820373/151‑1 (MQ=21) cgccCGATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCCTTCATCAACCGGCACCGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCAc < 2:332613/151‑1 (MQ=17) cgccCAATACCTCCAGTAATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAc < 1:3725807/151‑1 (MQ=21) cgccCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAc > 1:2151995/1‑151 (MQ=255) gccCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAcc < 1:3387964/151‑1 (MQ=255) gccCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCGTCAATCGGCCCCGACGCCACGCCCCCTGGTAAGAGCGGGTTCACCCGCGACTGGGCCGGCCCTGCCGCCCAATACCCACAGTCATTCACCGCCGCACCCGCCAcc > 2:3435730/1‑151 (MQ=21) cccAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTc > 1:5130499/1‑87 (MQ=37) cccAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 2:4548010/1‑114 (MQ=255) cAATCCCCCCCGTCAGTCACCGCCGCAC‑CCGCCATCGCATTCGTCCTTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCa < 2:1013761/151‑1 (MQ=17) cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCa > 2:4973778/1‑62 (MQ=18) cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAAt < 1:3661782/95‑1 (MQ=21) cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCa > 1:231155/1‑151 (MQ=255) aTACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt > 1:4985066/1‑151 (MQ=255) tACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc < 1:4593972/119‑1 (MQ=25) ccctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTca < 1:3838050/147‑2 (MQ=18) cctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCACATACCCCCAGGCATTAACAGCCGCACCGGCCACCGCAtccac > 1:5259963/4‑147 (MQ=18) cctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAg < 1:1437026/67‑1 (MQ=255) ccccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCAtacctc > 1:5153780/1‑146 (MQ=18) cccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGACGCACCCGCCACCGCATTCGCgg > 1:3279210/1‑151 (MQ=255) cccAGTCACTCACCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatca < 2:1416243/151‑5 (MQ=17) aGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCa > 1:3439947/1‑151 (MQ=255) gTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCACCGTCGCACCCGCCACCGCATCCGCGGCCaa > 2:1836021/1‑151 (MQ=21) gTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCcgcg > 2:2233104/1‑81 (MQ=255) tCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCCGGCAAg > 2:4066024/1‑151 (MQ=255) aTTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGcc > 1:4522643/1‑151 (MQ=255) aCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATGCACCGTCGCACCCGCCACCGCATGCGCGGGCAAGCCCGcc > 1:3171456/1‑150 (MQ=25) ccgccgCAC‑CCGCCACCGCATTCATCAATCGGCACCTTCTCCAGGCCCCCTTGGAGGAGCGGGTTCATGTCCGAATAGGCCGTACCTGCCGCCGAATTCCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTc < 1:2606970/151‑1 (MQ=37) ccgccgCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGc < 2:936776/125‑1 (MQ=255) cgccgcAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAc < 1:1551707/127‑1 (MQ=255) cgccgcAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTcc > 2:2804579/1‑151 (MQ=255) cAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa < 1:5212918/71‑1 (MQ=21) aC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc > 1:2429461/1‑63 (MQ=25) aC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:574926/76‑1 (MQ=21) ccACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGAACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg < 1:4090169/151‑1 (MQ=255) gCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCCCCTACATCAATCGGTGGc > 2:1169980/1‑151 (MQ=255) aTTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc > 2:5269627/1‑84 (MQ=17) aTTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcccc < 1:115282/83‑1 (MQ=255) ttCATCAATCGGCACCATCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAt < 2:2133493/113‑1 (MQ=255) tcaATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCa > 1:3552228/1‑151 (MQ=255) cactCGGCACCCTCGCCACGCACCCTTGTAGGAGCGGGGTCACCCGCGAACAGGCCGCACCTGCCGCCCTCTACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCAc < 2:5160228/148‑1 (MQ=21) gCACCGTCGCCACGTACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:1906587/52‑1 (MQ=14) cACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGt > 1:4196075/1‑151 (MQ=255) cACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCg > 1:5081197/1‑98 (MQ=255) | TCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910108‑2910405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |