| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,837,678 | C→T | intergenic (+229/‑322) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,837,678 | 0 | C | T | 85.4% | 150.8 / 21.0 | 89 | intergenic (+229/‑322) | RPPX_17095/RPPX_17100 | proteophosphoglycan precursor/cupin |
| Reads supporting (aligned to +/- strand): ref base C (9/4); new base T (31/45); total (40/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.34e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 | |||||||||||
TTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTA > CP009974/3837529‑3837816 | ttCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCACTTTTCCCCCGCCGCTCACCGTTGCTGCCGCCAccc > 2:2202478/1‑150 (MQ=2) tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc > 1:2443675/1‑151 (MQ=255) ccACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc < 2:709736/150‑1 (MQ=255) cACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAcc < 1:992327/151‑1 (MQ=255) cACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCAGCTGGCCAATTTCCACCCGCCCTTCACCCTTGCCGCCGCTAcc > 2:633630/1‑151 (MQ=255) aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGGTCACCCGCGCAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAccc > 1:217464/1‑150 (MQ=255) ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt < 1:70630/151‑1 (MQ=255) ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTCGCCAATTACCACCCGCCGTTCACCGTTGCCGCCGCTACCGt > 1:802435/1‑151 (MQ=255) ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTGGCAGGAGCGGGGTCACCCGCGAGAGAGCCGGGCCAGCTGGCCAACTTCCCCCCGCCCTTCACCGTCGCGGCCGCCACTGt > 2:2229877/1‑151 (MQ=14) cATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTCCCGtt > 1:2421116/1‑150 (MQ=255) cATTGCCGCCGCTACCGTAGTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTa < 1:1134483/151‑1 (MQ=255) aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGCGGGCGGCACAGGCCGCTGTAGGCGCGGGGTCACCCGCGCAAGGGCCGGGCCTGCTGGCCAATTTCCAACCGCCGTTCCCCGTTGCCGCCGCTACCGTAt > 2:4766797/1‑151 (MQ=11) ttGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAtt < 1:2013621/151‑1 (MQ=38) ttGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAtt < 1:2013048/151‑1 (MQ=38) gggcgccgcTACCGTAGGCGCGGGTAGCCCCGCTCCGGCACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:2407442/148‑1 (MQ=11) gccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcg < 1:799036/151‑1 (MQ=38) cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgcg > 1:2949723/1‑151 (MQ=37) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 1:5104766/151‑1 (MQ=38) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg > 2:4294160/1‑151 (MQ=38) cgcgagcGTATTCGCGGGTAAACCCGCTCCTACACACGCAGCGAGGGCGGCAGAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt < 1:5269376/145‑1 (MQ=11) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt < 1:4069824/151‑1 (MQ=37) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt < 1:573860/151‑1 (MQ=38) cgcTACCGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt < 1:4071443/151‑1 (MQ=255) gctagggTATTCGCGGGTAAACCCGCTCCTACGCACGCGGCGAGGGCGGCACAGGCCGGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTa < 2:2284682/145‑1 (MQ=11) cTACGGGATTCGCTGGTAAACCCGCTGCTACACGCGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa < 2:1353523/151‑1 (MQ=11) cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa < 1:3941279/151‑1 (MQ=37) tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaaa > 1:2836770/1‑151 (MQ=21) tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCCGTGCTGCCCCTTTCTTATTCGCGGGTaag > 2:4340562/1‑150 (MQ=11) agggTAGTCGCGGGTAGACCGGGTCCAACACCGGCGTCGAGGGCGGCACAGGCCGTCGTATGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAc < 2:3287090/148‑1 (MQ=11) aCCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAc > 2:943127/1‑151 (MQ=25) gcggaTTCGCGGGTAAACCCGCCGCTACACACGCATCGAGGGCGGCCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc < 2:397137/147‑1 (MQ=11) ccGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc > 2:3492075/1‑151 (MQ=18) gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg > 1:1120971/1‑151 (MQ=25) tATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc < 1:785044/151‑1 (MQ=25) tATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc < 1:786730/151‑1 (MQ=25) aTTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGcc > 2:2885058/1‑150 (MQ=25) ttCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTc > 1:132710/1‑151 (MQ=21) tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc > 1:899208/1‑151 (MQ=21) tgcgGGTGAACCGGGTCCTACACATGCAGCGAGGGCGGCACAGGCCGTTGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt < 2:2703079/150‑1 (MQ=11) cgcgGGTAAGACCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt < 1:1055907/151‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACCCACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt < 1:2410448/151‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt > 1:3332573/1‑151 (MQ=25) gcgGGTAAACCCGCTCCTGCACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg < 2:1552571/151‑2 (MQ=19) cgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTACACCCGCTCCtgc > 2:2985084/1‑149 (MQ=12) cgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc > 1:493947/1‑149 (MQ=18) cgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc > 1:5261179/1‑149 (MQ=18) gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgca < 1:1680035/151‑1 (MQ=18) ggTAACCCGGCTCCGACACACGCATCGAGGGTGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcac < 2:807970/151‑1 (MQ=11) ggTAAACCCGCTCCTACACACGCATCGGGGGCGGCACAGGCCGTTTGAGGAGCGGGTTCACCCGCGAAAGGGCCGTGCCTGCTGGCCACTTTCTACCCGCAGTCCACCGTTGCGCCGGCTACTCTATTCGCTGGTACAACGGCTCCTtcac > 2:3456076/1‑151 (MQ=11) gctagaCCCGCCCCTACGCAGGCATCGAGGGCTGCAGAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcac < 2:4290510/146‑1 (MQ=11) gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcccgcacc > 1:1958521/1‑145 (MQ=16) tAACCCCGCTCCTACACACGCCTCGTGGGCGGCGCTGCCCCTTGTACGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac < 2:4356744/151‑1 (MQ=11) aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg > 2:3752476/1‑151 (MQ=18) aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg > 2:731777/1‑151 (MQ=18) ccGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCCCCCGCACACGCCTc > 2:2268122/1‑151 (MQ=255) gCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCgg > 2:5288804/1‑150 (MQ=2) cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt < 1:5078801/151‑3 (MQ=9) cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt > 1:162919/1‑149 (MQ=9) cagccGCGAAAGGGGCGGGCCTGCTGGTCAATTTTCACCGGCCGATCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGGGTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCct < 1:4181969/148‑1 (MQ=2) cccagcgATAGGGCCGGGTCTGCTGGCCAATTCTCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACTC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 2:1787585/147‑1 (MQ=9) aCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 1:4284316/151‑1 (MQ=2) aCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 1:5286651/151‑1 (MQ=2) ccGCGAAGGGGCCGGTCCTGCTGGCCAATTTTCACCAGCCGTTCTCGGTTGCTGCCGCTACCGTAGTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:2345951/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCGTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCGGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 1:3502551/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCGAATTTTCACCAGCCGTTCAACGTTGCTGCCGCTACCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 1:4434930/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTCCCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:31401/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct > 2:235082/1‑151 (MQ=11) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 1:170097/151‑1 (MQ=2) cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCGGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 2:150742/151‑1 (MQ=11) cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 2:3227558/151‑1 (MQ=2) ccgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:2073831/150‑1 (MQ=2) cgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGACAGGGCCGGGCCTGCTGGc > 2:4041131/1‑151 (MQ=2) gAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCCACCGAATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGcc < 2:5069675/151‑1 (MQ=9) aaaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCa < 1:3455756/151‑1 (MQ=2) aaGGGCCGGGCCTGCTGGCCAGTTTTCACCAGCCGTTCACCGTTGCTGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaa < 2:1451941/151‑1 (MQ=2) aaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaa < 2:3097971/151‑1 (MQ=2) aGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt > 1:5408570/1‑151 (MQ=2) aGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 1:618014/151‑1 (MQ=2) aGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 1:39988/151‑1 (MQ=2) cgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttca < 1:4166300/151‑6 (MQ=2) cgggccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttcc > 1:3461420/1‑146 (MQ=2) ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTACACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc < 1:615587/151‑1 (MQ=2) ccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccag > 1:3869106/1‑149 (MQ=2) ctgctgGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagc > 2:613653/1‑148 (MQ=2) gctgGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccg > 1:2480953/1‑146 (MQ=2) tgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgcc > 2:2099875/1‑144 (MQ=2) tgGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgct > 2:862381/1‑144 (MQ=2) tgGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgcc > 2:567042/1‑144 (MQ=2) cACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCCGGCCCATCTTCACCACCCGCTCACCCCTGCCCCCGCCACCGTa > 2:1106872/1‑151 (MQ=2) | TTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTA > CP009974/3837529‑3837816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |