| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,844,127 | C→T | intergenic (+345/‑1) | RPPX_17120 → / → RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,844,127 | 0 | C | T | 99.2% | 913.6 / NA | 250 | intergenic (+345/‑1) | RPPX_17120/RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (111/137); total (112/138) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 265 total aligned reads displayed.
GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 | gATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTgg < 1:4045736/151‑1 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat > 2:3548467/1‑151 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat > 1:3806191/1‑151 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 2:296311/151‑1 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc > 1:2742658/1‑151 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt < 1:726040/151‑1 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt < 1:3470968/151‑1 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt > 2:4821772/1‑151 (MQ=255) gtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTc > 2:3781754/1‑151 (MQ=255) aaaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGc < 1:822216/151‑1 (MQ=255) aaaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGc > 2:628668/1‑151 (MQ=255) aaaaaTTTTTTTTTTTTTTTTAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCt > 2:3445619/1‑151 (MQ=255) aaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCt > 2:4060334/1‑151 (MQ=255) aaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCt < 2:4166440/151‑1 (MQ=255) tttttGAAGATTTTTGAGAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgag < 2:3140785/151‑1 (MQ=255) ttttGAATATTTTTTTTTTTTTTTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgaga > 2:795608/1‑151 (MQ=255) ttttGAATATTTATGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAACCGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgaga < 1:2225132/151‑1 (MQ=255) tttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGagag > 1:1373948/1‑151 (MQ=255) tGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcg < 1:1291484/151‑1 (MQ=255) aaTATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGcc < 2:5291744/151‑1 (MQ=255) aaTATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGcc < 2:2536896/151‑1 (MQ=255) atatTTTTGACAATTAGTTCGACAGCCCTGCACTCCGATCTTAATATGCGCCCCGTCCACAGCGATGCACGAAAACGAAGCGCCAGGCACCCAGCCAGCGCCTCAGTTCAAAGCTACACCGCGCCGCCCTAGCTCAGCTGCGAGAGCGccc > 2:5372888/1‑150 (MQ=255) tatTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTg < 2:2065711/151‑1 (MQ=255) ttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatgg > 2:2275581/1‑151 (MQ=255) aaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcatg > 1:2051145/1‑151 (MQ=255) aaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGc < 2:1400153/151‑1 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa < 2:751544/151‑1 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa > 1:2440027/1‑151 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa > 2:1704898/1‑151 (MQ=255) ttAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCag < 1:206140/151‑1 (MQ=255) tAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg > 1:567339/1‑151 (MQ=255) tAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagg > 1:3315741/1‑151 (MQ=255) tttGACAGCCCTTTCATCCCATCTTAAGACGCGCCCGCTCCACAGCGATGAACAGATACACAGAGCCAAGCACCCAGTCAGCGAGGCAGGTCAAGGCTACATTCTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCaggagg < 2:4646552/151‑1 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCa > 1:2951504/1‑151 (MQ=255) aCAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAg > 2:2698154/1‑151 (MQ=255) cAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc > 2:3682628/1‑151 (MQ=255) aGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg > 1:4590183/1‑151 (MQ=255) aGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg < 1:261814/151‑1 (MQ=255) cccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGt > 2:5124836/1‑151 (MQ=255) gCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGa > 1:374645/1‑151 (MQ=255) aaTCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATc < 1:3380166/151‑1 (MQ=255) aTCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATcc > 1:3601258/1‑151 (MQ=255) cGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGt < 1:163831/134‑1 (MQ=255) gATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCt > 1:4106060/1‑151 (MQ=255) aTCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCtt > 2:2733886/1‑151 (MQ=255) ttAATATGCGCCCGGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGc < 2:5397161/151‑1 (MQ=255) ttAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCTGCTTAGc > 2:3343168/1‑151 (MQ=255) tAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCt < 1:1188074/151‑1 (MQ=255) aagatGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTc < 2:3867537/148‑1 (MQ=255) aaTATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTc > 2:3024159/1‑151 (MQ=255) aaTATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTc < 2:855150/151‑1 (MQ=255) atatGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGGTCGATCCCGCTTAGCTcc > 1:4464094/1‑151 (MQ=255) tGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccacc > 1:1122904/1‑151 (MQ=255) ccccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAat < 2:1270968‑M1/151‑3 (MQ=255) ccccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAat < 2:3275873‑M1/151‑3 (MQ=255) ccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCGCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattc < 1:2995634‑M1/151‑5 (MQ=255) cGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattcc > 2:1840612‑M1/1‑146 (MQ=255) tCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgc > 1:2862316‑M1/1‑144 (MQ=255) caGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcgcag > 2:1432983‑M1/1‑140 (MQ=255) gCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagca < 1:5115783‑M1/151‑14 (MQ=255) cGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGccagggttc < 1:910407/151‑8 (MQ=37) gAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaa < 1:3138611‑M1/151‑19 (MQ=255) cgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcgtagcagccaaggc > 1:2313140‑M1/1‑130 (MQ=255) cgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTcgcg > 2:4124182/1‑147 (MQ=255) cgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTcgcg < 1:4124182/147‑1 (MQ=255) gaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc < 2:4688146/108‑1 (MQ=255) gaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc > 1:4688146/1‑108 (MQ=255) cgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATc < 2:3643205/151‑1 (MQ=255) cgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTAAATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataa < 1:1355360‑M1/151‑28 (MQ=255) aGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGGCTGCGGATCGCTCCCGCTTAGCTCCACCAAaatccgcttagcagccccggctgataagca > 2:2021751‑M1/1‑121 (MQ=255) ccgggcacCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagat < 2:5188615‑M1/148‑35 (MQ=255) ccAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTCGCCGCAGCACGCGATACCGGAACGCCACGa > 2:2055437/1‑151 (MQ=25) cAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatc > 2:2100509‑M1/1‑116 (MQ=255) ggCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAtttt > 2:2885323/1‑118 (MQ=255) ggCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgg < 1:3400998‑M1/151‑38 (MQ=255) cccAGCCAGGGATTCAGTTCAGAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAtttt < 2:1184064/114‑1 (MQ=255) cagccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGCGGTCAGCGGTTCGCTCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccag > 1:1156575‑M1/1‑108 (MQ=255) agccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagc < 1:4308013‑M1/151‑45 (MQ=255) agcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaac > 1:320718‑M1/1‑103 (MQ=255) agcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaac > 1:707036‑M1/1‑103 (MQ=255) agcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaac < 1:2096018‑M1/151‑49 (MQ=255) gcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaacc < 2:456745‑M1/151‑50 (MQ=255) cGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccg > 1:3515854‑M1/1‑101 (MQ=255) ttCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtc > 1:1074348‑M1/1‑98 (MQ=255) ttCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtc < 2:2137026‑M1/151‑54 (MQ=255) ttCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACg < 2:4311983/131‑1 (MQ=255) aGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttggcagccaaggctgataagcaagatcgggtccagcaaaccggtcttg > 2:4737994‑M1/1‑95 (MQ=255) ttCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaa > 1:4417672‑M1/1‑93 (MQ=255) tCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaag > 1:5083319‑M1/1‑92 (MQ=255) tCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTAc < 1:1544077/133‑1 (MQ=255) tCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTAc > 2:1544077/1‑133 (MQ=255) aGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaa > 2:4420334‑M1/1‑88 (MQ=255) gCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaag < 1:3939157‑M1/151‑65 (MQ=255) cTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTcccc < 1:1703351/133‑1 (MQ=255) aCATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaagaag < 2:2352363‑M1/151‑68 (MQ=255) aCATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaagaag < 1:415421‑M1/151‑68 (MQ=255) tgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCt > 1:4733478/6‑137 (MQ=18) cATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggtaagaagg < 1:4490817‑M1/151‑69 (MQ=255) tttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc > 1:5284624/4‑151 (MQ=21) tccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCg < 1:1469840/149‑1 (MQ=255) | GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |