| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,515,235 | A→G | intergenic (‑22/+120) | RPPX_24605 ← / ← RPPX_24610 | transposase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,515,235 | 0 | A | G | 98.2% | 579.8 / NA | 169 | intergenic (‑22/+120) | RPPX_24605/RPPX_24610 | transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (78/88); minor base T (1/2); total (79/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 169 total aligned reads displayed.
AATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515114‑5515382 | aaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAtt < 1:3281627/151‑1 (MQ=14) cGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGCGCCAGTCCAATTTCa > 2:3700678/1‑151 (MQ=16) aTACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAgg > 1:3877527/1‑151 (MQ=25) tACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGa < 1:3681860/151‑1 (MQ=25) aCCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGAt < 2:4513078/151‑1 (MQ=37) aCCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGAt > 1:2866333/1‑151 (MQ=37) cgacgtgtTGAGCCACCGTTCGGAAAGCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGAGCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATcc < 2:4606613/147‑1 (MQ=14) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc < 1:539235/151‑1 (MQ=255) aGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACg < 1:568919/151‑1 (MQ=255) tgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAc < 2:4068979/151‑1 (MQ=255) tgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAc < 2:4068659/151‑1 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 2:1385987/151‑1 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 1:3764012/151‑1 (MQ=255) aGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtg > 1:3463578/1‑151 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt > 2:851708/1‑151 (MQ=255) ccACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgtg < 2:3700843/151‑1 (MQ=255) cACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCCGTgg > 2:2302224/1‑151 (MQ=255) gccTTTCGGAAACCGGTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 2:4002515/150‑1 (MQ=255) cccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 1:2662842/150‑1 (MQ=255) aCCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 2:2166553/151‑1 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa < 1:5322841/151‑1 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa > 2:104642/1‑151 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa < 1:2895954/151‑1 (MQ=255) cTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAg > 1:2483919/1‑151 (MQ=255) tttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGc < 2:4711152/151‑1 (MQ=255) ttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCg > 2:1960760/1‑151 (MQ=255) ggAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGc > 2:513346/1‑151 (MQ=255) aaaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGa < 1:5436398/151‑1 (MQ=255) aaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAg < 1:3152892/151‑1 (MQ=255) ttGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcgc > 2:302249/1‑151 (MQ=255) tgctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTgg < 1:250280/134‑1 (MQ=255) tgctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTgg > 2:250280/1‑134 (MQ=255) gctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGa < 1:2135681/151‑1 (MQ=255) gctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGa < 2:4148490/151‑1 (MQ=255) gctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGCATCCACGACCCCCGTCGGAGCGGGCGAGCCCGCGa > 2:3643862/1‑151 (MQ=255) ctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGCGCGGGCGAGCCCGCGaa > 1:91375/1‑151 (MQ=255) tgcCGTCCAGGTAGGCTGTGATCGCTGTAAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAg < 1:5126267/151‑1 (MQ=255) gcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAgg < 2:3807755/151‑1 (MQ=255) cGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGc > 2:3021294/1‑151 (MQ=255) gTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCt > 1:3973425/1‑151 (MQ=255) tCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTg > 2:2619370/1‑151 (MQ=255) cAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCa > 2:1165264/1‑151 (MQ=255) gTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAag > 1:3993198/1‑151 (MQ=255) tAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagc > 1:1758966/1‑151 (MQ=255) aGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagca > 1:5192292/1‑151 (MQ=255) aGGCTGTGATCGCCGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagca < 1:5232673/151‑1 (MQ=255) gCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagcagc > 1:1547850/1‑151 (MQ=255) ttgtgATCGCGGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcc < 2:3769803/150‑1 (MQ=255) gtgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 2:5000396/151‑1 (MQ=255) gggATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGACCCCCCGAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 1:4050524/149‑1 (MQ=255) gATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCaa < 1:1326842/151‑1 (MQ=255) gATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCaa > 1:159390/1‑151 (MQ=255) aTCGCGGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAAt < 2:4648919/151‑1 (MQ=255) tCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGAGCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAAtt < 1:4821844/151‑1 (MQ=255) cGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTa < 2:3172351/151‑1 (MQ=255) cTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAGGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACa < 2:5271156/151‑1 (MQ=255) tgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTg > 2:2530358/1‑151 (MQ=255) gAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGt > 1:291636/1‑151 (MQ=255) gAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGt < 2:2820093/151‑1 (MQ=255) cTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTg < 2:3318829/151‑1 (MQ=255) tGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAg > 2:4517425/1‑151 (MQ=255) tGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAg < 1:4604605/151‑1 (MQ=255) tGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAg < 1:1733157/151‑1 (MQ=255) gAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGc < 1:1126804/151‑1 (MQ=255) gatCGGTGTCCTTTCCCATAGTTCTCCCAGGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCACTTTCAGGTTCGACGGCCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAt < 2:1672367/149‑1 (MQ=37) cTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc > 1:865437/1‑151 (MQ=255) cTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc > 2:3541812/1‑151 (MQ=255) tCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtct < 1:2673720/151‑1 (MQ=255) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGCCCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc < 1:1445198/151‑1 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc > 1:3555705/1‑151 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc > 1:4470399/1‑151 (MQ=255) gtgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCt > 1:3761200/1‑151 (MQ=255) gtgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCt > 1:1238375/1‑151 (MQ=255) gtgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCt > 1:1238374/1‑151 (MQ=255) tgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTCGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTg > 1:1568967/1‑151 (MQ=255) gtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTgg < 1:352426/151‑1 (MQ=255) gtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTgg > 2:1546257/1‑151 (MQ=255) aCCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAg < 2:1277409/151‑1 (MQ=255) cccATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAgg > 1:4633992/1‑151 (MQ=255) cccATAGACCCCCGAGGTGGTGGATTTGTCTCCAATGTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAgg < 2:3739992/151‑1 (MQ=37) cATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGaa < 1:851708/151‑1 (MQ=255) cATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGaa < 1:1137800/151‑1 (MQ=255) aTAGATCCCCCAAGGGTTGGATTGGTGTCAAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGACCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAg < 1:937890/151‑1 (MQ=255) aTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAg < 2:5403216/151‑1 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt > 2:3469954/1‑151 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt > 1:4366855/1‑151 (MQ=255) cccccAAGGCTTGGGTTTGTGTCCATCTTCTCGGGGGCAGTACAATTTCAGAATCCGCGACCCCTGGGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTg < 1:1036067/151‑1 (MQ=37) cccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGcc > 2:430162/1‑151 (MQ=255) cccAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGcc > 2:750116/1‑151 (MQ=255) cAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTg > 2:2898502/1‑151 (MQ=255) aaGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGc < 1:1801166/151‑1 (MQ=255) aGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCg > 1:2528826/1‑151 (MQ=255) aGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCg > 2:2733963/1‑151 (MQ=255) gTTGGATTGGTGTCAAACTTCTTGGGGGCAGTGCAATTTCAGGATCCACGACCCTTGTGGGAGCGGGCGGGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAAc < 1:2520180/151‑1 (MQ=255) ttGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACg < 1:4272421/151‑1 (MQ=255) ttGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACg < 1:2816338/151‑1 (MQ=255) tGGATTGGTGTCGAACTCCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGc < 1:3045888/151‑1 (MQ=255) tGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGc > 2:542117/1‑151 (MQ=255) gATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTg < 1:1396762/151‑1 (MQ=255) aTTGGTGTCCAACTTCTTGGGGGCAGTCCACTTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGTGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGACCGCTgg > 2:4622023/1‑151 (MQ=255) | AATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515114‑5515382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |