| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 139,240 | G→T | intergenic (+242/+57) | RPPX_00595 → / ← RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 139,240 | 0 | G | T | 98.3% | 804.9 / ‑4.8 | 241 | intergenic (+242/+57) | RPPX_00595/RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/4); new base T (118/117); total (120/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 241 total aligned reads displayed.
CTGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTC > CP009974/139092‑139387 | ctgctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCTGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGAGTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGCGGCCGTGc > 2:5224090/1‑151 (MQ=255)ctgctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGc > 1:3702776/1‑151 (MQ=255) tgctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCTAACAGGCCGTGcc > 1:3266791/1‑151 (MQ=255) gctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGACGAGCCCGTGccc > 2:2449069/1‑150 (MQ=255) gctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCct < 1:4757322/151‑1 (MQ=255) tgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCctgc > 1:4515784/1‑151 (MQ=255) ccgaTTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTgg < 1:2538907/148‑1 (MQ=255) aTTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCa > 1:5340401/1‑151 (MQ=255) ttCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAt > 1:5363330/1‑151 (MQ=255) tCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGTGCGGGTTTACCCGCGGAGAGGCCGTGCCTGCTGGCCagtt > 2:564785/1‑148 (MQ=255) agccgccgTTCACCGTGAGCGCGGCTACCGTAGTCGCGGTTAAACCCGCGCCTACACCTATCGGGGGTGGACACACATGGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTcc < 2:2266475/149‑1 (MQ=14) aCCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCACTCTcc > 2:4660227/1‑151 (MQ=255) ccgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGTCTTCTTGCCAATCTCCAc > 1:2273936/1‑151 (MQ=255) ccgccgTCCACCTTTCCCGCCGCTCCCGTACTCGCGGCTAAACCCGCTCCGACCCCTATCGGGGGTGTACACACACTGGTGATTGGGCGCAGGCCGTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAc < 2:351184/151‑1 (MQ=14) cgccgGTCACCGCGACGTGCGCTACCGTAGGCGGGGGTAAGGCCGCTGGGACACCTGTCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc < 1:5037049/151‑1 (MQ=14) gccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAccc < 1:1039136/151‑1 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcccc > 1:1806042/1‑150 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCGCCAcccc > 2:3349745/1‑150 (MQ=255) tttACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAcc < 1:3388031/150‑1 (MQ=255) gTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAcc > 1:85874/1‑151 (MQ=255) aCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTa < 1:1070245/151‑1 (MQ=255) ccgcctCTACCGCATGCGCGGGTACACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAg < 2:2058592/151‑1 (MQ=17) gcTACCGTATTCGCGGGTCAACCCGCTCCCACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgccgcc < 1:1130120/151‑1 (MQ=255) gcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgccgcc > 1:4809517/1‑151 (MQ=255) cTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGcca < 1:3976326/151‑1 (MQ=255) tACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGccac < 1:315929/151‑1 (MQ=255) cGTATCTGCGGGTCAACCCGATCCTACACCTATCGGGGGTCGACAAAAATTGGTGTTTGGCCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCcaccac < 2:1703056/151‑1 (MQ=17) tgggtgcgGGGAAGGCCGCTGCTGCACCTATCGGGGGTGGACACACATTGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTc < 2:1771673/146‑1 (MQ=18) tagtCGCGGGTAAACCGGCGCCTACACCTATGGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTc < 2:1581121/148‑1 (MQ=18) aTTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCa < 1:903702/151‑1 (MQ=255) gcgGGTACGCCCGCTGCTACACCTATCGGGGGTGGACACACATTGGGGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAAcc < 2:4953746/151‑1 (MQ=255) gcgGGTAAGGCCGCGCCTACACCTAGCGGGGGTGGACACACATTGGAGACTGGGCGCAGGCCGGCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAAcc < 2:840009/151‑1 (MQ=18) cgGGTAAGCCCGCTCCTACACCTAGCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAAccc < 2:2537779/151‑1 (MQ=255) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt < 1:2023334/151‑1 (MQ=255) ggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCtt > 1:3445161/1‑151 (MQ=255) tAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTc > 1:1005209/1‑151 (MQ=255) aaaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCaaa < 1:965543/143‑1 (MQ=255) aaaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa > 1:577904/1‑151 (MQ=255) aaaCCCGCGGCCACACCTATCGGGGGTGGACACAGGTGGGTGAGTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa < 2:2834810/151‑1 (MQ=17) aCCCGCTCCTACACCTTTCGGGGGCGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTCCTCGCGCGAAGAGGCTGTGCCAGCTGGCCAATCTCCACCCGCCGTGCACCGTAGCCGTCACCACCCAAACCCtccccaa > 2:1978316/1‑145 (MQ=18) aCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaaa > 2:330749/1‑151 (MQ=255) cccGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaaaa > 1:5428566/1‑151 (MQ=255) ccGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAg > 1:1332863/1‑151 (MQ=255) gCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc > 1:3244751/1‑151 (MQ=255) gCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTGACCAGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTCCAAACGGc > 2:4631966/1‑151 (MQ=255) gCTCCGACACGTATCGGGGGTGGACACACATTGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc < 1:4639303/151‑1 (MQ=21) cTCCTACACCTATCGGGGGTGGACACACACTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGcc < 1:5103246/151‑1 (MQ=255) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGCAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGccc > 2:3693606/1‑151 (MQ=255) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGccc < 1:2827904/151‑1 (MQ=255) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGccc > 1:1181714/1‑151 (MQ=255) tACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCAt > 1:4278193/1‑151 (MQ=255) tACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCAt < 2:2495959/151‑1 (MQ=255) tACACATATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCAt < 1:3749656/151‑1 (MQ=255) cccTAGCGGGGGTAGACCCACATGGGTGGTGGCGCGCAGGCCGTCGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCa < 2:3253854/150‑1 (MQ=21) ccTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAc > 2:627766/1‑151 (MQ=255) cTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAcc > 2:356504/1‑151 (MQ=255) tttCGGGGGTGGACAGACACTGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc < 2:1840141/149‑1 (MQ=255) aTCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGGGCGGCGTGACCCGCGAGGAGGTCGCGCCTGCTTTCCAATAACCACCCGCCGGTCACCGTAGCCGCCACGACTCAAACCCTTTCAAAAGGCCCCATGCACCCg > 2:4408798/1‑151 (MQ=21) tCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGc > 1:3327648/1‑151 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc < 1:4248923/151‑1 (MQ=255) gggggTGGACACACATGGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc < 2:5144789/151‑1 (MQ=255) gggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGa > 2:1688915/1‑151 (MQ=255) tgTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACgcc > 2:4215135/2‑149 (MQ=255) ggACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGaccac > 1:3005964/1‑151 (MQ=255) cacaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCaa > 2:2987126/1‑151 (MQ=255) aTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGaa < 2:2693221/151‑1 (MQ=255) tGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCa < 2:3204198/134‑1 (MQ=255) tGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCACGAAAt > 1:4576674/1‑151 (MQ=255) gTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTc > 2:137436/1‑151 (MQ=255) ggggCCCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAc < 2:5183825/150‑1 (MQ=255) gggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAcc > 1:5194341/1‑151 (MQ=255) gcAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctct > 2:221854/1‑151 (MQ=255) gCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGc < 1:5324895/151‑1 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGCCCACCCCAAGAAATTCGCAACCCTCTTCGca > 2:4912575/1‑151 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGca > 1:3223990/1‑151 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCAACACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAACTCGCAACCCTCTTCGca > 2:1632221/1‑151 (MQ=255) cgtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcac < 1:635586/151‑1 (MQ=255) tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAg < 1:1688915/151‑1 (MQ=255) tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAg > 1:3515957/1‑151 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGGCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgc < 2:4150473/151‑1 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACCACAgc > 2:4064170/1‑151 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgc > 1:1530088/1‑151 (MQ=255) aGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgcgc > 2:4480237/1‑151 (MQ=255) ggcgCGGGTGTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc < 2:1248512/148‑1 (MQ=255) aGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTGCACCCGCCGCTCACCGTAGCCGCCACGACTCAAACCCTTTAAAAAGGCCCCATGCACCCGCAGGACCACGCCAAGAAATTCGCAACCTTCTTCGCACAACAGCGCCgg > 1:2047712/1‑151 (MQ=37) gggTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaa > 1:2121935/1‑139 (MQ=255) gTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGt < 1:4931119/151‑1 (MQ=255) tttACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCCCCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGtt < 2:1524890/151‑1 (MQ=255) aCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAGGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACt < 2:954510/151‑1 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGt > 2:251364/1‑151 (MQ=255) cgcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCCCCGGGTAGTTACCGtt > 2:4323739/1‑151 (MQ=255) gcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGCTACTGTTc > 2:1895653/1‑151 (MQ=255) gAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa > 2:1320139/1‑151 (MQ=255) aaGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAAt < 1:2724319/151‑1 (MQ=255) aaGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAAt > 1:1377278/1‑151 (MQ=255) agagGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATg > 2:1195815/1‑151 (MQ=255) gagGCCGTGCCTGCTGGCCACTCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGc < 2:2817951/151‑1 (MQ=255) gCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCtt < 1:2361291/151‑1 (MQ=255) ccGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTc > 2:3729670/1‑151 (MQ=255) ccGTGCCTCCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTc < 2:2194920/151‑1 (MQ=255) | CTGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTC > CP009974/139092‑139387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |