Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 1,449,631 T→C intergenic (+144/‑45) RPPX_06395 → / → RPPX_06400 chemotaxis protein/thiol:disulfide interchange protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,449,6310TC99.4% 1164.8 / ‑4.1 328intergenic (+144/‑45)RPPX_06395/RPPX_06400chemotaxis protein/thiol:disulfide interchange protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (153/173);  minor base A (2/0);  total (155/173)
Fisher's exact test for biased strand distribution p-value = 2.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 331 total aligned reads displayed.

TCTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGTGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGC  >  CP009974/1449483‑1449778
                                                                                                                                                    |                                                                                                                                                   
tCTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTgcgc                                                                                                                                                   <  2:1785270/151‑1 (MQ=255)
    aggcggcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATcc                                                                                                                                               <  2:2775787/148‑1 (MQ=255)
     gTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCg                                                                                                                                              >  1:3249304/1‑151 (MQ=255)
        ggcggGTGTTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTa                                                                                                                                           >  1:2022648/1‑151 (MQ=255)
        ggcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTa                                                                                                                                           >  1:5282074/1‑151 (MQ=255)
         gcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGGCGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTAt                                                                                                                                          <  2:3076714/151‑1 (MQ=255)
         gcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTAt                                                                                                                                          >  1:3497088/1‑151 (MQ=255)
          cggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATc                                                                                                                                         >  2:2212153/1‑151 (MQ=255)
          cggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATc                                                                                                                                         >  1:1644956/1‑151 (MQ=255)
            ggtggtCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCCTCCGTTATCAt                                                                                                                                       >  1:312093/1‑151 (MQ=255)
               ggtCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTGTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGcc                                                                                                                                    <  1:3190855/151‑1 (MQ=255)
               ggtCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATcc                                                                                                                                               <  2:768772/140‑1 (MQ=255)
                gtCTCCAGGACAGGTGTTGCAGCTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCg                                                                                                                                   <  2:335670/151‑1 (MQ=255)
                 tCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCgg                                                                                                                                  >  2:4402481/1‑151 (MQ=255)
                 tCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCgg                                                                                                                                  <  1:3614000/151‑1 (MQ=255)
                   gCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCACCCGTTATCATGCCGGGc                                                                                                                                >  1:2925775/1‑151 (MQ=255)
                    ccAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCa                                                                                                                               >  1:4719285/1‑151 (MQ=255)
                     cAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCAc                                                                                                                              >  2:1558004/1‑151 (MQ=255)
                     cAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCAc                                                                                                                              <  1:427746/151‑1 (MQ=255)
                        gACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGtt                                                                                                                           <  1:2488293/151‑1 (MQ=255)
                         aCAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTc                                                                                                                          >  2:2498112/1‑151 (MQ=255)
                         aCAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTc                                                                                                                          <  2:138770/151‑1 (MQ=255)
                          cAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTcc                                                                                                                         >  1:1389888/1‑151 (MQ=255)
                             gtgtAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACCTTCCAcc                                                                                                                      >  1:382203/1‑151 (MQ=255)
                              tgtAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCt                                                                                                                     >  1:4228787/1‑151 (MQ=255)
                               gtAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTc                                                                                                                    <  2:3569176/151‑1 (MQ=255)
                                tAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTcg                                                                                                                   <  2:1902661/151‑1 (MQ=255)
                                  gCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTcgcg                                                                                                                 >  2:3737386/1‑151 (MQ=255)
                                  gCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTCCCACCTcgcc                                                                                                                 >  2:834575/1‑150 (MQ=255)
                                   cAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGa                                                                                                                <  2:131416/151‑1 (MQ=255)
                                   cAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGa                                                                                                                >  2:2979874/1‑151 (MQ=255)
                                    aaCTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAg                                                                                                               <  1:1919940/151‑1 (MQ=255)
                                          agagGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGcc                                                                                                         >  1:4957330/1‑151 (MQ=255)
                                           gagGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCa                                                                                                        <  1:5426951/151‑1 (MQ=255)
                                            ggggTTTGACGTGATATGTGTTGCGTCTGGGAGATCGCGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCAt                                                                                                       <  1:1679586/150‑1 (MQ=255)
                                            agGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCAt                                                                                                       <  1:3935530/151‑1 (MQ=255)
                                            agGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCAt                                                                                                       >  1:1543149/1‑151 (MQ=255)
                                            agGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCACTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACATCGCGAGTCCGCCAt                                                                                                       >  1:2975980/1‑151 (MQ=255)
                                             gggTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCCCGTTCCACCTCGCGAGTCCGCCATg                                                                                                      >  1:841247/1‑151 (MQ=255)
                                             gggTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGAGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATg                                                                                                      >  2:4119778/1‑151 (MQ=255)
                                             gggTTGGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATg                                                                                                      <  2:2869941/151‑1 (MQ=255)
                                                      gTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCCTGCGCCGCCTg                                                                                             >  2:3898032/1‑151 (MQ=255)
                                                          tatGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGtttt                                                                                         <  1:4846113/151‑1 (MQ=255)
                                                           atGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGttttt                                                                                        >  2:1147378/1‑151 (MQ=255)
                                                            tgtgTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTc                                                                                       <  2:649476/151‑1 (MQ=255)
                                                             gtgtTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTcc                                                                                      >  2:1236634/1‑150 (MQ=255)
                                                             gtgtTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTcc                                                                                      >  2:2268737/1‑150 (MQ=255)
                                                               gtTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATg                                                                                    <  1:2955529/151‑1 (MQ=255)
                                                                ttGCGTCTGGAAGATCGAGCGCCGCCCGCCCGGCGCTTCGCGGGTAAACTCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATTATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCAttc                                                                                   >  2:4361249/1‑149 (MQ=37)
                                                                  gCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTg                                                                                 <  1:3532670/151‑1 (MQ=255)
                                                                  gCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTAGCGAGTCCGCCATGCGCCGCCTGCTTTTCATGCTg                                                                                 >  2:3264699/1‑151 (MQ=255)
                                                                   cGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGt                                                                                >  2:5427350/1‑151 (MQ=255)
                                                                     tCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTc                                                                              <  1:4402481/151‑1 (MQ=255)
                                                                         ggAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgc                                                                          >  2:447549/1‑151 (MQ=255)
                                                                          gagaTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgct                                                                         >  1:4654010/1‑151 (MQ=255)
                                                                            gaTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctgc                                                                       <  2:2725463/151‑1 (MQ=255)
                                                                             aTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctgct                                                                      >  2:42250/1‑151 (MQ=255)
                                                                               cGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTgg                                                                    >  2:2077562/1‑151 (MQ=255)
                                                                                gAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGAGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTCTTTCATGCTGTTCCTGCTGCTGGc                                                                   >  2:5081328/1‑151 (MQ=255)
                                                                                   cgccgcCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAg                                                                >  2:2543026/1‑151 (MQ=255)
                                                                                    ggcgcccgcGCGGCGCTTCGCGGGTAAACCCGCTCATACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGc                                                               <  2:723038/149‑1 (MQ=255)
                                                                                    gccgccCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGc                                                               <  1:4125837/151‑1 (MQ=255)
                                                                                       gcccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCt                                                            >  2:930671/1‑151 (MQ=255)
                                                                                             gcggggCGTCGCGGGTAAACGCGCTCCTACGTTTGTTGCGGGCCAATTATTCCGGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTc                                                      <  2:3689604/151‑1 (MQ=255)
                                                                                             gcggcgCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTc                                                      >  1:2666633/1‑151 (MQ=255)
                                                                                             gcggcgCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCCGGCCAGCCCTGCCTTc                                                      >  1:227760/1‑151 (MQ=255)
                                                                                              cggcgCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcg                                                     <  1:5018943/151‑1 (MQ=255)
                                                                                                gcgcTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgcc                                                   <  1:2244251/151‑1 (MQ=255)
                                                                                                    ttCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAg                                               >  1:4030584/1‑151 (MQ=255)
                                                                                                        cgGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCt                                           <  1:1261163/151‑1 (MQ=255)
                                                                                                           gTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCt                                        <  1:999260/151‑1 (MQ=255)
                                                                                                            tAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCCGCCCTGCCTTCCCCGCTGGCCTGCTc                                       >  2:963923/1‑151 (MQ=255)
                                                                                                            tAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTc                                       <  2:3951220/151‑1 (MQ=255)
                                                                                                            tAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTc                                       <  2:4032505/151‑1 (MQ=255)
                                                                                                             aaaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCg                                      <  1:2044599/151‑1 (MQ=255)
                                                                                                             aaaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCg                                      <  2:381034/151‑1 (MQ=255)
                                                                                                                cccGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGCCCCGCCCTCCCTTCCCCGCCGGCCTGCTCGACa                                   >  1:2735791/1‑151 (MQ=255)
                                                                                                                 ccGCTCCTACGGTTGTTTCGGGCGAATTAGTCCTGCGCGTGCGTTATCATGCGGGGCCCGTTCCACCTCGCGAGGCCGCCATGCGCCGCGTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACaa                                  <  2:4905728/151‑1 (MQ=255)
                                                                                                                     tCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGc                              <  2:557391/151‑1 (MQ=255)
                                                                                                                      ccTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGcc                             <  2:2441624/151‑1 (MQ=255)
                                                                                                                       cTACGTTTGTTTCGGGCCAATGATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGccc                            <  2:116931/151‑1 (MQ=255)
                                                                                                                         aCGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTCCCTTCGCCGCAGGCCTGCTCGCCAACCGccccc                          >  1:3792776/1‑150 (MQ=255)
                                                                                                                          cGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAg                         >  1:4003165/1‑151 (MQ=255)
                                                                                                                           gtttgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAgc                        <  1:4599379/151‑1 (MQ=255)
                                                                                                                           gtttgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAgc                        >  1:789193/1‑151 (MQ=255)
                                                                                                                               gtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTCTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCCCCGCAGGCCCGCTCGACAACCCCCCCAGCGccc                    >  1:1005952/1‑150 (MQ=255)
                                                                                                                                  tCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCAccc                 >  2:1690818/1‑151 (MQ=255)
                                                                                                                                  tCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTATTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCAccc                 >  2:5200086/1‑151 (MQ=255)
                                                                                                                                   cGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCt                >  1:2173184/1‑151 (MQ=255)
                                                                                                                                    gggCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACACCCGCCCCAGCGCCACCCtt               >  1:255226/1‑151 (MQ=255)
                                                                                                                                     ggCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTg              <  2:5424045/151‑1 (MQ=255)
                                                                                                                                      gCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTgg             <  1:1564223/151‑1 (MQ=255)
                                                                                                                                      gCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTgg             >  1:4888984/1‑151 (MQ=255)
                                                                                                                                         aaTTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGgcgc          >  1:4360620/1‑151 (MQ=255)
                                                                                                                                          attattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGcgcc         <  1:4785708/151‑1 (MQ=255)
                                                                                                                                             attCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCt      <  2:2340422/151‑1 (MQ=255)
                                                                                                                                              ttCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCtt     <  1:3747436/151‑1 (MQ=255)
                                                                                                                                               tCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTc    <  1:4514783/151‑1 (MQ=255)
                                                                                                                                                ccTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCg   <  2:4644664/151‑1 (MQ=255)
                                                                                                                                                 cTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGc  >  1:3358652/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TCTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGTGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGC  >  CP009974/1449483‑1449778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: