Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 382,187 C→T intergenic (+323/+206) RPPX_01535 → / ← RPPX_01540 guanine permease/5‑hydroxyisourate hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009974382,1870CT98.3% 482.0 / ‑1.1 181intergenic (+323/+206)RPPX_01535/RPPX_01540guanine permease/5‑hydroxyisourate hydrolase
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base T (89/87);  total (92/89)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.14e-01

Only 100 of 187 total aligned reads displayed.

CCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCAAAAAACAGCAGACGAA  >  CP009974/382040‑382332
                                                                                                                                                   |                                                                                                                                                 
    cTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCACTCTCCACCCGCCGTTCACCGTTGCtgccgccc                                                                                                                                            >  1:4949822/1‑149 (MQ=255)
     tGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCAc                                                                                                                                           <  1:3073970/151‑1 (MQ=255)
     tGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCGTGCTTAACATTGGAAAGGCCGGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCGCCACCCGCCTTCCACCTTTGCTGCCGCCAc                                                                                                                                           >  2:1626649/1‑151 (MQ=21)
      gCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCAcc                                                                                                                                          <  1:2578575/151‑1 (MQ=255)
       cGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCg                                                                                                                                         >  1:4458478/1‑151 (MQ=255)
        gTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGt                                                                                                                                        >  1:204725/1‑151 (MQ=21)
          cAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTAt                                                                                                                                      <  1:5328930/151‑1 (MQ=21)
          cAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTAt                                                                                                                                      >  1:3639727/1‑151 (MQ=255)
          cAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATATCCACCCGCCGTTCACCGTTGCGGCCGCCACCGTAt                                                                                                                                      >  2:1633769/1‑151 (MQ=255)
            aaTGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTc                                                                                                                                    <  1:818604/151‑1 (MQ=21)
              tGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgc                                                                                                                                  >  1:2459457/1‑151 (MQ=21)
               ggCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgcg                                                                                                                                 >  1:4000572/1‑151 (MQ=255)
               ggCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgcg                                                                                                                                 <  2:5337996/151‑1 (MQ=18)
               ggCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgcg                                                                                                                                 >  1:1247870/1‑151 (MQ=255)
                   cggaaCAGACGGAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTGCCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTa                                                                                                                             <  2:1529141/148‑1 (MQ=17)
                   cGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgccgtta                                                                                                                             >  2:3580595/1‑146 (MQ=18)
                   cGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTa                                                                                                                             <  1:1473338/151‑1 (MQ=18)
                    gAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTaa                                                                                                                            >  2:4363845/1‑151 (MQ=255)
                      aaCAGACGTAGGGGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAAc                                                                                                                          <  2:3439093/151‑1 (MQ=17)
                       aCAGACGTAGGAGCCACTATCTTCCTTAAAATTGGAAAGGCCTGCGCGGACCCCCCGTAGGTACGGGTTTACCCACGAAGAAGCCGGCCCTGCTGGCCAATAACCAGACGCTGTTAACCAATGCTACCGCTAGCGTATTCGCGCGCAAAcc                                                                                                                         >  2:4477784/1‑151 (MQ=255)
                          gACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGc                                                                                                                      >  1:1654214/1‑151 (MQ=255)
                           aCGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCt                                                                                                                     <  1:5297833/151‑1 (MQ=255)
                              tAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                                                  <  2:973847/151‑1 (MQ=255)
                              tAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                                                  >  2:3060567/1‑151 (MQ=255)
                              gaGGGGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                                                  <  1:1842563/150‑1 (MQ=17)
                               gggAGCACCTATCTTGCTTCCCCTTGGACGGGCCTGCGCGTTCCCCCCGTAGGAGCGGGGTTGCCCGTGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTAGTCGCGGGTAAACCCGCTCCTa                                                                                                                 <  2:660776/150‑1 (MQ=14)
                                 gAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTacc                                                                                                               >  2:2145706/1‑150 (MQ=17)
                                 gAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTaca                                                                                                               >  1:392289/1‑151 (MQ=17)
                                 gAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCATGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTacc                                                                                                               >  1:696748/1‑150 (MQ=17)
                                   gCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAcc                                                                                                             <  1:1484750/151‑1 (MQ=17)
                                    ccACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCt                                                                                                            >  2:2465073/1‑151 (MQ=255)
                                    ccACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCt                                                                                                            >  2:2465649/1‑151 (MQ=255)
                                     cACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTg                                                                                                           >  1:3283240/1‑151 (MQ=255)
                                        tATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATc                                                                                                        >  1:5099840/1‑151 (MQ=17)
                                         aTCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCg                                                                                                       >  1:1918390/1‑151 (MQ=17)
                                         aTCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCg                                                                                                       <  1:532688/151‑1 (MQ=255)
                                           cTTGCTTAACATTGGAACGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggt                                                                                                     <  2:566538/151‑1 (MQ=17)
                                           cTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggt                                                                                                     <  2:1356923/151‑1 (MQ=255)
                                            ttGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggtg                                                                                                    >  2:4809399/1‑151 (MQ=255)
                                             tGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggtgg                                                                                                   >  2:1206607/1‑151 (MQ=255)
                                                 tAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGCTCGGtggtggg                                                                                               >  2:5200107/1‑150 (MQ=17)
                                                    cATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACTCGGTCCTACACCTGATCGGTGTTTGacat                                                                                            >  1:1603083/1‑150 (MQ=17)
                                                      ttGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGacacac                                                                                          >  2:2063326/1‑151 (MQ=17)
                                                       tGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTACACCCGCTCCTACACCTGATCGGTGGTGGAcacaca                                                                                         >  2:2175916/1‑151 (MQ=17)
                                                       tGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGAcacaca                                                                                         >  1:2788971/1‑151 (MQ=17)
                                                         gAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATg                                                                                       >  1:844908/1‑151 (MQ=17)
                                                         gAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGCCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTCAACCCGCTCCTACACCTGAGCGGCGGTGGAcacacaat                                                                                       >  1:2430904/1‑149 (MQ=17)
                                                          agaGGCCTGCGGGGTACCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGt                                                                                      <  2:1400981/149‑1 (MQ=14)
                                                          aaaGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGt                                                                                      <  2:1401824/151‑1 (MQ=17)
                                                          aaaGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGt                                                                                      <  1:1474354/151‑1 (MQ=17)
                                                            aGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCg                                                                                    >  2:5416747/1‑151 (MQ=17)
                                                              gCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCggg                                                                                  <  2:3662071/151‑1 (MQ=17)
                                                              gCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCCCCTACACCTGATCGGTGGTGGACACACATGTCggg                                                                                  >  2:3760461/1‑151 (MQ=17)
                                                                cTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCggggg                                                                                <  1:3477312/151‑1 (MQ=255)
                                                                 tGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACCTGATCGGTGGTGGACACACATGCCGGGGGt                                                                               >  2:2639662/1‑151 (MQ=17)
                                                                 tGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACACGCTCCTACACCTGACCGCTGGCGGCCACACATGTCgggcgc                                                                               >  2:2808140/1‑148 (MQ=14)
                                                                   cgcgGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTg                                                                             >  1:1438509/1‑151 (MQ=17)
                                                                       gTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGca                                                                         <  1:4737865/151‑1 (MQ=17)
                                                                         ccccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGcaca                                                                       <  2:1254969/151‑1 (MQ=17)
                                                                         ccccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAGTGGTGGACACACATGTCGGGGGGTGGGcaca                                                                       >  2:3828877/1‑151 (MQ=17)
                                                                          cccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAg                                                                      <  1:140178/151‑1 (MQ=17)
                                                                          cccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAg                                                                      <  1:1351477/151‑1 (MQ=255)
                                                                          cccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAg                                                                      <  1:4995704/151‑1 (MQ=255)
                                                                           ccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAgg                                                                     >  1:984035/1‑151 (MQ=17)
                                                                              cGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGCCACACACGTCGGGGGGTGGGCACAGGCcg                                                                  >  2:3065995/1‑151 (MQ=14)
                                                                                tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTCCACCTGATCGGTGGTGGCCACACATGTCGGGGGTTGGGCACAGGCcgtc                                                                >  2:4121190/1‑151 (MQ=14)
                                                                                tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCcgtc                                                                <  2:289845/151‑1 (MQ=255)
                                                                                  ggAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCcgtcgt                                                              <  2:3963651/151‑1 (MQ=255)
                                                                                          tttgcccGCGAAGAGGCCGGCCCTGCTGGCCAATTTTCACCCGCCGTTCACTGTTGCCGCCGCTGCCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATCga                                                                                                      <  2:2607646/99‑2 (MQ=11)
                                                                                          tttGCCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTTCACCCGCCGTTCACTGTTGCCGCCGCTGCCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATCga                                                                                                      >  1:2607646/1‑102 (MQ=11)
                                                                                              cccGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCCCCTACCCCTGCTCGGCGGTGGACACACAAGACGGCGGTTGGGCACAGGCCGCCCCGCAGGAGCcggc                                                  >  2:1431207/1‑150 (MQ=14)
                                                                                                        ggccggccCTGCTGGCCAATTTTCACCCGCCGTTCACTGTTGCCGCCGCTGCCGTATTCGCGGGTAAAcc                                                                                                                         >  1:2884268/1‑70 (MQ=11)
                                                                                                          ccggccCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTgcc                                                                                                                                                   >  1:373838/1‑42 (MQ=40)
                                                                                                           cggccCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTgccgc                                                                                                                                                 >  1:3381361/1‑43 (MQ=38)
                                                                                                             gcgctgctgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAgg                                   <  1:405937/148‑1 (MQ=14)
                                                                                                              cggtggtgGCCAGTCGCCACGCGCCGGCCGCCGTTGCGGCCGCCGCCGTGTTCGCGGGTAAGCCCGCGCGTACACCTGAGCGGGGGTGGACACACATGTCGGGGGTTGGGCACAGACCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                  <  2:4117045/145‑1 (MQ=9)
                                                                                                               ccggctgGCCAAGCTCCACCCGCCGTCGACCGTTGCTGCGGCCACCGTCTTGGCGGGTAAACCCGGTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGcc                                 <  1:4563016/148‑1 (MQ=14)
                                                                                                               ccTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGcc                                 <  2:2571724/151‑1 (MQ=255)
                                                                                                                    tgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcac                            >  1:4259422/1‑151 (MQ=17)
                                                                                                                    tgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcac                            >  1:381772/1‑151 (MQ=255)
                                                                                                                     ggCCAATCTCCACCCGCCGTTCCCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca                           <  2:231909/151‑1 (MQ=17)
                                                                                                                     ggCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTCCACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCCCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGTGGCCGGcaca                           >  1:1196563/1‑151 (MQ=17)
                                                                                                                     ggCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca                           <  1:1174248/151‑1 (MQ=255)
                                                                                                                     ggCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca                           <  1:1093362/151‑1 (MQ=255)
                                                                                                                     ggCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGcaca                           >  1:3558871/1‑151 (MQ=14)
                                                                                                                     ggCCAATCTCCACCCGCCGTCCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca                           <  2:1934204/151‑1 (MQ=255)
                                                                                                                       ccAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                         >  1:1696494/1‑151 (MQ=17)
                                                                                                                         aatctCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCa                       <  1:2743180/147‑1 (MQ=255)
                                                                                                                          atctCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCaa                      <  1:2249540/148‑1 (MQ=255)
                                                                                                                            ctCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATg                    <  1:4940919/150‑1 (MQ=255)
                                                                                                                             tCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGc                   >  2:1492367/1‑151 (MQ=255)
                                                                                                                                aCCCGGCGTTCCGCGTTGCTGCCGCCACCGTATGCGCTGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTTGGGGGTGGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGGCACAGGCAATGCaaa                <  2:4701098/151‑1 (MQ=17)
                                                                                                                                  ccgccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCaaaaa              >  1:2663317/1‑151 (MQ=255)
                                                                                                                                  ccgccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCaaaaa              >  2:1286417/1‑151 (MQ=255)
                                                                                                                                   cgccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGCGGCCGGCACAGGCAATGCaaaaaa             >  2:4045695/1‑151 (MQ=255)
                                                                                                                                    gccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGTGGGTTGGGCACAGGTCGTCGTGTTGGAGCGTGTTTACTCGCGAAGCGGCCGTCTCAGGCAATACAACAAAc            >  2:4994149/1‑151 (MQ=17)
                                                                                                                                    gccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGTGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACTGCAAAAAAc            >  2:4994291/1‑151 (MQ=17)
                                                                                                                                     ccgTTCACGGTTGCTGCCGCCAGCGTATTCGCGGGTAGGCCCGCGGCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCAAAAAAca           <  2:4949822/151‑1 (MQ=18)
                                                                                                                                      cgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCAAAAAAcag          <  1:1633832/151‑1 (MQ=255)
                                                                                                                                        ttCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGCCGTGTAGGAGCGGGCTTACCCGCGAAGAGGCCGGCACCGGCAATGCAAAAAAaagca        >  2:2374011/1‑151 (MQ=17)
                                                                                                                                                   |                                                                                                                                                 
CCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATGCAAAAAACAGCAGACGAA  >  CP009974/382040‑382332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑