| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,920,803 | T→A | intergenic (‑432/+123) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,920,803 | 0 | T | A | 98.9% | 210.7 / NA | 89 | intergenic (‑432/+123) | RPPX_08560/RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); major base A (39/47); minor base G (0/1); total (39/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAGG > CP009974/1920691‑1920950 | cTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TACCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgag < 1:2243879/151‑1 (MQ=11) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga > 2:4716883/1‑151 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 1:3606830/151‑1 (MQ=2) ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGACGTGGGGCGCATTATACGGGGATTCGAGAgg > 2:4451016/1‑151 (MQ=2) ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAgg < 2:1026015/151‑1 (MQ=2) ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAgg < 2:3060508/151‑1 (MQ=2) gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTTGAGAggg > 1:2175135/1‑151 (MQ=2) gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATGATAAGGGGATTGGAGCggg > 1:2175116/1‑151 (MQ=2) aGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCg > 1:974192/1‑151 (MQ=2) aGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCg < 1:1857849/151‑1 (MQ=11) gcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCa > 2:4412377/1‑151 (MQ=2) gcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCa < 2:1156168/151‑1 (MQ=2) tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTCG‑CTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAc < 2:923169/151‑1 (MQ=2) gTCCACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAcc < 2:1789953/151‑1 (MQ=2) cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt < 2:1009439/151‑1 (MQ=2) cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt > 1:4597702/1‑151 (MQ=2) cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt > 2:4650512/1‑151 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TATCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:3484699/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:5227266/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 1:2547308/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 1:714560/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:461927/151‑1 (MQ=11) ccATCTTCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa < 1:4357038/151‑1 (MQ=2) ccATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa > 1:972799/1‑151 (MQ=2) tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt < 2:2474804/151‑1 (MQ=2) tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt > 1:4022223/1‑151 (MQ=2) tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt < 2:3429108/151‑1 (MQ=2) catcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTc < 1:415163/151‑1 (MQ=2) catcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTc > 1:5039975/1‑151 (MQ=2) atcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGCTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATCATAACGCGATTCGCTATGGCGTCAACCTTTAATTTCa > 2:3751597/1‑151 (MQ=2) cactacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCt < 2:4660602/144‑1 (MQ=255) actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATTTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc > 2:4695901/7‑151 (MQ=21) actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTTATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc < 2:5231299/145‑1 (MQ=21) ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc > 1:4518252/6‑151 (MQ=255) ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc > 1:5067171/6‑151 (MQ=255) ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc < 2:153164/146‑1 (MQ=255) cactttaCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGAGATTCGAGAGGGCGTCAAGCTTTAATTTCAATAACCGTTGATAGCACAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTccc < 2:3512838/145‑1 (MQ=21) ccttAACTCATTGAATCTCAAGGAGTATTTCATACCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:2525626/148‑1 (MQ=21) acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 1:4463541/148‑1 (MQ=255) acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc > 2:2726395/4‑151 (MQ=255) acgcaaCTCATTGAATCACAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGCGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:4819392/147‑1 (MQ=21) accTAACTCATGGAATCTCAAGGAGTTTTTCGTTCCTATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:2829402/149‑1 (MQ=255) tgaaCTCATTGAATCTCAAGGAGTTTTTCGTTCCGGTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGAGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGc < 2:3260942/149‑1 (MQ=255) aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt > 1:4907401/1‑151 (MQ=255) aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt < 2:4613580/151‑1 (MQ=255) aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt > 1:3687562/1‑151 (MQ=255) cTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAtt > 1:1265222/1‑151 (MQ=255) tCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTc > 1:4615079/1‑151 (MQ=255) ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc > 1:2061870/1‑151 (MQ=255) ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc > 2:588341/1‑151 (MQ=255) tGAATGTCAAGGAGTTTTTCGTTCCGATGTCGCGGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTGATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:5317872/151‑1 (MQ=255) tGAATCTCAAGGAGTGTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:2399366/151‑1 (MQ=255) gAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTAATAAAAAAAAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTa < 2:3928027/151‑1 (MQ=18) aaTCTCAAGGAGTTTTGCGTTCCGAGGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTag < 2:3250990/151‑1 (MQ=255) aTCTCGAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 1:265533/151‑1 (MQ=255) aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 2:1403186/151‑1 (MQ=255) aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga > 1:2186791/1‑151 (MQ=255) aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 1:1090279/151‑1 (MQ=255) tctcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACACAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTagag > 2:3692263/1‑151 (MQ=255) tcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGca < 1:3729773/151‑1 (MQ=255) tcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGca > 1:3132233/1‑151 (MQ=255) cAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcac > 2:1051702/1‑151 (MQ=255) cAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcac > 1:2373197/1‑151 (MQ=255) aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt > 1:4397733/1‑143 (MQ=255) aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:4397733/143‑1 (MQ=255) aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcaca > 1:3180844/1‑151 (MQ=255) ggAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACAcc < 1:1240480/151‑1 (MQ=255) gAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCa > 1:2711864/1‑151 (MQ=255) gAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGAAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCa < 2:619929/151‑1 (MQ=255) aGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAg < 1:2092386/151‑1 (MQ=255) aGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAg < 2:4487869/151‑1 (MQ=255) gTTTTTCGTTCCGATATCGCTGGAAGTGGGGAGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCATTGAGAGCGCAGAAAAAACAAAGCGACGAGGCCTGACGGCCTCCCCGCTATCCATCTAGAGCACAccctc > 2:3804920/1‑148 (MQ=25) tttttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGca < 1:2474201/147‑1 (MQ=255) ttttTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGca < 2:3032650/151‑1 (MQ=255) ttttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcac > 1:428419/4‑151 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca > 1:5007053/2‑151 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca < 2:5120121/150‑1 (MQ=255) tCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGACCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcaccac < 1:4077741/151‑1 (MQ=255) gcGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcaccac < 2:4237004/150‑1 (MQ=255) cGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACg > 1:2545249/1‑151 (MQ=255) gTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGa > 1:2590376/1‑151 (MQ=255) gTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCCCCCCGCCATTCATCTACAGCACACCACCACCACGa > 2:5091406/1‑151 (MQ=255) ttCCGCTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGaa < 1:1741399/151‑1 (MQ=255) ttCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGaa < 1:4567049/151‑1 (MQ=255) tCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAg < 1:4300495/151‑1 (MQ=255) tCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAg > 2:436139/1‑151 (MQ=255) tCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAg > 1:781316/1‑151 (MQ=255) ccGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAgg < 2:3006769/151‑1 (MQ=255) ccGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATACACCTAGAGCACACCAGCACCACGAAgg > 1:1258328/1‑151 (MQ=255) | CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAGG > CP009974/1920691‑1920950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |