| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,984,399 | T→C | intergenic (+229/+55) | RPPX_08865 → / ← RPPX_08870 | hypothetical protein/SulP family inorganic anion transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,984,399 | 0 | T | C | 99.2% | 818.6 / ‑2.9 | 252 | intergenic (+229/+55) | RPPX_08865/RPPX_08870 | hypothetical protein/SulP family inorganic anion transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (135/114); total (137/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
Only 100 of 254 total aligned reads displayed.
CTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCAGA > CP009974/1984251‑1984546 | ctcctgGCCAATGCCCGCCGGCCGTTCACCGTGGCCGCCGCTACCAGATTCGCGGGTAAACCCGCTACTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc < 2:1161110/148‑1 (MQ=14) gctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCGGGCCAATCTCCa > 1:1162178/1‑151 (MQ=255) tgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCCATCCCCAcc > 1:1984014/1‑151 (MQ=255) aaTCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCCACGCCCCCGCTGTTCGCCACAGCCCGCCGTCGCAGCGGCGCTACCCGCGCCAGTGCCCGCCCTGCCGCCCCATCTCCACgccccg > 2:3368319/1‑151 (MQ=9) ctcCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGACCTGCTGGCCAATCTCCACCCGCCGTTc > 1:3238627/1‑151 (MQ=255) tcCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCCTCGGTGGTTCGCCCCAGCCCGTCGTCGGACCGGGCTTACCCGCGACACGGCCGGCCCCGCTGCCCACTCTCCACCCCCCCTTcc > 2:5148352/1‑150 (MQ=14) tcCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAACCCCCCCTAGGACCGGGGTTACCCGCGCAAGGGCCCTCCCTGCTGCCCAAACTCCACCCCCCGTTCa > 2:190697/1‑151 (MQ=17) gccccgtgTTCGCCGTTGCCGCCGCGACCGTCCGCGCGGATCTACCCGTCCCGACATACGCGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCg < 2:3553857/144‑1 (MQ=14) aCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTCTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCCCCGTTCACCg > 1:772746/1‑151 (MQ=255) ccgccgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGGAAGGGCCGGCCCTGCCGGCCCATGTCCACCCCCCGCTCACCGtc > 2:1133607/1‑150 (MQ=17) cgccgTTCACCGTTGCCGCCGCTACCGTCTTCGCGGGTAAACCCGCTACTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTg < 1:5433511/151‑1 (MQ=255) gccgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgc > 1:3067975/1‑151 (MQ=255) gTTCACCGTTGCCGCCGCTACCGTATTCGTGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTcgccgc > 2:5018528/1‑151 (MQ=255) tCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCCCCGTTgccgccc > 2:1417563/1‑150 (MQ=255) acggTTGCCGCCTCTGCCGTATGCGCGGGTAAACCCGCTCCTACATACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACt < 1:3106293/148‑1 (MQ=17) aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACGCCCCCACACCCGCTGTTCTCCACAGCCCCTCGTAGGAGCGGGTCTACCCGCGCAACGGCCGGCCCTGCTGCCCGAACCCCACCCCCCGTTCTCCGTCGCCCCCAcc > 2:1295612/1‑150 (MQ=9) aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACt > 1:2590131/1‑151 (MQ=255) ccGTGGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTa < 1:237133/151‑1 (MQ=255) cGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTAc < 1:3533918/151‑1 (MQ=255) tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGt < 1:1539550/151‑1 (MQ=255) gcgaCCGTATTGGCGGATAAGCCCGCTCCGCGATAGACGGATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGAGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTcgcg < 2:2437336/148‑1 (MQ=14) tACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCggg < 1:4896410/151‑1 (MQ=255) aCCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGt > 1:1249976/1‑151 (MQ=255) gTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTaaa > 1:4538877/1‑151 (MQ=255) gTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATACGCGGTTaaa > 1:655435/1‑151 (MQ=255) cgcgGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGCGGAAACCCAc > 2:2786316/1‑151 (MQ=255) atctaCCCGCTCCGGCAGACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTa < 1:3889536/147‑1 (MQ=17) tAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCCCTACCGTATTCGCGGCTAAACCCACTCCTAc > 1:2781144/1‑151 (MQ=255) aaCCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGc > 1:2595526/1‑151 (MQ=255) cccGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGccc > 1:4939010/1‑151 (MQ=255) ccGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGcccc > 1:4388848/1‑151 (MQ=255) gCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCaa > 1:4217947/1‑151 (MQ=255) ccggcgcacgcGCATCGGTGGTTCGGCGCAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAAccc < 2:5372061/145‑1 (MQ=11) ccTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCCAccc > 2:3819607/1‑151 (MQ=255) tACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAAccccc < 1:5241733/151‑1 (MQ=255) acacacccGCAGCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCg < 1:1089074/151‑1 (MQ=255) acacacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAaccaccc > 2:2171991/1‑150 (MQ=255) cacacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGc > 1:2128929/1‑151 (MQ=255) acacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCt > 1:1393157/1‑151 (MQ=255) cacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTg > 1:3385128/1‑151 (MQ=255) cacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTa < 1:2274179/151‑1 (MQ=255) acGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAg < 1:794812/151‑1 (MQ=255) cGCATCGGTGGTTCGCCACCGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGt < 1:5331716/151‑1 (MQ=255) gCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTc > 1:797513/1‑151 (MQ=255) cATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAACCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACCCCTACGCCCCAACCCCCGCTGTAGTcc > 2:2665730/1‑151 (MQ=255) aTCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCg > 1:3707237/1‑151 (MQ=255) ggtggtTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTCTAGTCCGcca > 1:934063/1‑149 (MQ=255) gtggtTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAAc > 1:2914529/1‑151 (MQ=255) ggtTCGGCGCAGGCCGTCGTAGGAACGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCg < 1:4665178/151‑1 (MQ=255) ttCGCCGCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGcc < 2:1936971/151‑1 (MQ=255) ttCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGcc > 2:3152075/1‑151 (MQ=255) ccACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTc > 2:2969354/1‑151 (MQ=255) cgcaggccGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACACCCGCGGTAGTCCGCAACCGGCCCTCg > 2:3064245/7‑151 (MQ=14) cacaGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCCTTGCCGCCACTACCGTACTCGCGGGTAAACCCACTCCTACGCCCCAAACCCCGCAGTAGTCCGCAACCGCCCCTCg > 2:1512657/1‑151 (MQ=255) caGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGAt > 1:5173155/1‑151 (MQ=255) cccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCg > 2:872136/1‑151 (MQ=255) ccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCgc > 2:374647/1‑150 (MQ=255) ccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCgc > 2:4774716/1‑150 (MQ=255) ccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGa > 2:4775031/1‑151 (MQ=255) tAGGGGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCCCCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTc < 2:4710754/151‑1 (MQ=255) tAGGAGCGGGTTTACCGGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTc < 1:1133607/151‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTc > 2:4200940/1‑151 (MQ=255) ggAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAg > 1:3688139/1‑151 (MQ=255) ggAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACg < 1:2256940/102‑1 (MQ=2) aGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGgc > 1:1010805/1‑151 (MQ=255) gCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGgcg < 1:1343761/151‑1 (MQ=255) gCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGgcg > 2:414731/1‑151 (MQ=255) gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgcc > 2:4521077/1‑151 (MQ=255) ggtgtggccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgccg < 1:5295879/144‑1 (MQ=255) gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgccgc > 1:2384370/1‑151 (MQ=255) gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCCTCAGGcgccgc > 2:4984045/1‑151 (MQ=255) tttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgct < 1:11956/151‑1 (MQ=255) ttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTCAACCCACTCCTACGCCCCAACCCCCGCTGGATGCCGCAACCGCCCCTCGATCCGGCGCTTCAGGCGCCgctg > 2:1975718/1‑151 (MQ=21) tACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgctgc > 1:3932717/1‑151 (MQ=255) ccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGc < 1:3751291/118‑1 (MQ=255) ccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGctct < 1:4791914/151‑1 (MQ=255) gcgAAAGGGCCGGCCCTGCTGGCCAATCGCCCCCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTAt < 1:2815888/151‑1 (MQ=255) ccaaaaGGGCAGGCCCTGCTGCCCAACCTCCACCCGCCGTTCACCGTTGCCGCCACTCCCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCACCCGCCCCTCGATCCGCCGCTTCAGGCGCCGCTGCTCTAt < 2:3232115/148‑1 (MQ=25) cgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATc > 1:1685117/1‑151 (MQ=255) aaaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAg < 1:1850229/151‑1 (MQ=255) aaaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAg < 1:414731/151‑1 (MQ=255) gaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGc < 2:1472595/150‑1 (MQ=255) aaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgct > 2:287065/1‑140 (MQ=255) aaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgct < 1:287065/140‑1 (MQ=255) aGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCa > 1:304949/1‑151 (MQ=255) cggccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGt < 1:849183/151‑1 (MQ=255) gccgcgctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGa < 1:2765214/146‑1 (MQ=255) cccTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGAc < 2:439165/151‑1 (MQ=255) cccTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGAc < 1:2303857/151‑1 (MQ=255) ctgctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGAccc > 2:2023229/1‑151 (MQ=255) ctgctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGAccc > 2:3959311/1‑151 (MQ=255) tcgtgGCCAGTCTCCACCCGCCGTTCACCGTTGCCGCCACTGCCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGAGCCGACGCTTCAGGCGCCGCTGCTCTAGCAGCAACCGTGACCCa < 2:782860/148‑1 (MQ=37) gctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCAt < 1:1869028/151‑1 (MQ=255) ctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCAtt > 2:1798956/1‑151 (MQ=255) ggCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTgg > 2:2573101/1‑151 (MQ=255) ggCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCCATCAGCAACCGTGACCCATTgg < 1:3820458/151‑1 (MQ=255) ccAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCa > 1:4258292/1‑151 (MQ=255) cAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGc < 2:2273684/132‑1 (MQ=255) cAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCAg < 2:682423/151‑1 (MQ=255) cAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCAg < 2:3708412/151‑1 (MQ=255) | CTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCAGA > CP009974/1984251‑1984546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |