| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,706,246 | +C | coding (232/1899 nt) | mutL → | DNA mismatch repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,706,243 | 1 | . | C | 99.6% | 820.0 / NA | 231 | A77P (GCC→CCC) | mutL | DNA mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base C (120/110); minor base A (0/1); total (120/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 262 total aligned reads displayed.
CCGGCATCTGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGG‑CCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAGGCATG > CP009974/2706093‑2706388 | ccggcATCTGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGc‑tggccctgg < 2:5235547/151‑1 (MQ=255) gcATCTGTAGCCAAGGGACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGGATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGGGCGGGACGATGGCAGCGGTACTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccc > 2:4195318/1‑151 (MQ=255) cATCTGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑cccc > 1:3775683/1‑150 (MQ=255) cTGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccccgac > 1:582065/1‑147 (MQ=255) tGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccccgaca > 1:1224646/1‑146 (MQ=255) tGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccccgaca > 2:2505981/1‑146 (MQ=255) tGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccccgaca > 2:3033571/1‑146 (MQ=255) gTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGacac > 1:4450577/1‑151 (MQ=255) tAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccc > 2:2574859/1‑144 (MQ=255) tAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑tggccctgg‑ccc < 1:2574859/144‑1 (MQ=255) gaGCCAAGGAACTGCTGGAAACCAGGCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGACCCGACACg < 2:765930/150‑1 (MQ=255) aGGCACTGCTGGAAAACAGCATGGGCACCGGTGTCCGGCGTAGCGATGTCGAAGTAGAGTAGGGCGGCGTCAAACTGCTGAAGGTGCGGGTCGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGccacca < 2:4992573/151‑1 (MQ=255) gAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGc > 1:3016764/1‑151 (MQ=255) aaaCTGCTAGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCAATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGc < 1:108487/150‑1 (MQ=255) aCTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCaa < 2:940687/151‑1 (MQ=255) tgctgGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGa > 2:550771/1‑151 (MQ=255) ggAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcg < 2:4498625/151‑1 (MQ=255) ggAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcg < 1:2142454/151‑1 (MQ=255) gAAAACAGCCTGGGCTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcgc < 2:1363175/151‑1 (MQ=255) aaaaCAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcgcg > 1:150120/1‑151 (MQ=255) aaaaCAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcgcg > 1:3495905/1‑151 (MQ=255) aaaaCAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCcgcg > 1:3587361/1‑151 (MQ=255) aaaCAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGa > 2:2707230/1‑151 (MQ=255) ccTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGa > 1:2849926/1‑151 (MQ=255) cTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGaa > 2:3456266/1‑151 (MQ=255) cTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGaa < 2:1211767/151‑1 (MQ=255) cTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGaa < 1:4016483/151‑1 (MQ=255) cTGGACTCCGGAGCCCGGCGGATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGACGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGaa < 2:1729751/151‑1 (MQ=255) tGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAg < 1:796988/151‑1 (MQ=255) tGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAg < 1:422789/151‑1 (MQ=255) ggACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGa > 2:1972570/1‑151 (MQ=255) aCTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGAcc < 1:464164/151‑1 (MQ=255) cTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCt < 1:2249518/151‑1 (MQ=255) gTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAGGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAg < 2:2682952/151‑1 (MQ=255) gTGCCCGGCGTATCGATGTCGAAGGAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAg < 1:4109405/151‑1 (MQ=255) cccGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGACGACCTTGAAgggg > 2:3458189/1‑151 (MQ=255) cccGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAgggg < 1:1696308/151‑1 (MQ=255) ccGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGt > 2:3707073/1‑151 (MQ=255) cGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTa > 2:3557750/1‑151 (MQ=255) cGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTg > 1:742671/1‑151 (MQ=255) cGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTg > 1:1338002/1‑151 (MQ=255) cGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTg < 1:682700/151‑1 (MQ=255) tATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAg > 1:1963772/1‑151 (MQ=255) tATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAg < 2:1493050/151‑1 (MQ=255) gaggtggAAGTCGAACGGGGCGGCGTCGACCTGGTGAGGGCCCGCGACGCCGGAAGTGGCATCTCTGCCCCCG‑CCCGCCGCATGGCCATGGCCCCGCCACGCCACCAGCAAGATCCGCGGGCTGGAAGACCTTGAAGGGGTATTGAGCCTg < 2:2751087/145‑1 (MQ=255) gATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTg > 2:5099972/1‑151 (MQ=255) gAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTc < 1:2505981/151‑1 (MQ=255) aaGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTcc > 1:459310/1‑151 (MQ=255) gTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGt > 2:1898997/1‑151 (MQ=255) aGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTgg > 2:2115866/1‑151 (MQ=255) cAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAg > 2:2378245/1‑151 (MQ=255) gggCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGc > 2:2522034/1‑151 (MQ=255) ggcggcGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCt > 2:122884/1‑151 (MQ=255) ggcggcGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCt > 2:635129/1‑151 (MQ=255) cggcgTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCttt > 1:3711000/1‑151 (MQ=255) ggcgTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTg > 2:2973487/1‑151 (MQ=255) cgTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGc > 2:4059123/1‑151 (MQ=255) gTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGcc > 1:1804911/1‑151 (MQ=255) gTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCCGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGcc > 2:2306626/1‑151 (MQ=255) cAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTc < 1:2800101/151‑1 (MQ=255) aaCTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGa > 1:617556/1‑151 (MQ=255) aaCTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGa > 2:4885712/1‑151 (MQ=255) aaCTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGa < 1:3316764/151‑1 (MQ=255) aCTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGAt < 2:728528/151‑1 (MQ=255) tgctgAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTAGTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCa > 2:1319253/1‑151 (MQ=255) ggctgAAGGGGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCa < 2:58634/150‑1 (MQ=255) gctgAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAg < 1:5055173/151‑1 (MQ=255) ctgAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGt > 1:4180603/1‑151 (MQ=255) aaGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCg > 1:3920487/1‑151 (MQ=255) gTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTg < 1:3071713/151‑1 (MQ=255) cGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGgcg > 1:1171881/1‑151 (MQ=255) ggACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGgcgcg > 1:952263/1‑151 (MQ=255) ggACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGgcgcg > 1:3265755/1‑151 (MQ=255) ccGACGGCAGCGCTATTTCGGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCACGATCAGTTCGGTGGCGCGcc < 2:3111308/150‑1 (MQ=255) gATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGcctg < 2:168746/151‑1 (MQ=255) tGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGcctgac < 1:4795559/151‑1 (MQ=255) ggCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGcctgacc > 2:1304156/1‑151 (MQ=255) ggCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGcctgacc > 2:864680/1‑151 (MQ=255) ggCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCGTTGGCCTCGATCAGTTCGGTGGCGCGcctgacc > 1:2011141/1‑151 (MQ=255) gCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGcctgaccc > 2:928664/1‑151 (MQ=255) gTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGGCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCGGTTCGGTGGCGCGCCTGACCCTGACCt > 1:4370477/1‑151 (MQ=255) gTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCt > 2:4666532/1‑151 (MQ=255) tATTTCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTc < 2:2079403/151‑1 (MQ=255) tCTGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGt > 2:4367372/1‑151 (MQ=255) tGCCGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTAc < 2:970538/151‑1 (MQ=255) ccGACGACCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCg < 1:2491344/151‑1 (MQ=255) cgacgaCCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGc > 1:2821264/1‑151 (MQ=255) gacgacCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGACGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGCACCGcc > 2:2628513/1‑151 (MQ=255) acgacCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCa < 1:5150682/151‑1 (MQ=255) acgacCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCa < 1:3509687/151‑1 (MQ=255) cgacCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAg < 2:4347160/151‑1 (MQ=255) gacCTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGt > 1:5230640/1‑151 (MQ=255) cTGCCGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGTCGCGCCTGACCCGGACCTCGCGTACCGCCAGCGcc > 2:2793258/1‑151 (MQ=255) ccGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGc < 1:3160144/151‑1 (MQ=255) cGC‑TGGCCCTGGCCCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCg > 2:1800147/1‑151 (MQ=255) c‑tggccctggccCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAg < 1:4436105/151‑1 (MQ=255) c‑tggccctggccCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAg > 1:5180197/1‑151 (MQ=255) c‑tggccctggccCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAg > 1:2264426/1‑151 (MQ=255) tggccctggcccCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAgg < 1:5099972/151‑1 (MQ=255) tggccctggcccCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGCGCCAGCGAgg > 2:5218336/1‑151 (MQ=255) | CCGGCATCTGTAGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGTATCGATGTCGAAGTAGAACAGGGCGGCGTCAAACTGCTGAAGGTGCGGGACGATGGCAGCGGTATTTCTGCCGACGACCTGCCGC‑TGGCCCTGG‑CCCGACACGCCACCAGCAAGATCCGCGAGCTGGAAGACCTTGAAGGGGTATTGAGCCTGGGCTTCCGTGGCGAGGCTTTGGCCTCGATCAGTTCGGTGGCGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGCGAGGCATG > CP009974/2706093‑2706388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |