| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,078,587 | (G)6→7 | coding (983/1272 nt) | RPPX_13690 → | DeoR faimly transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,078,581 | 1 | . | G | 98.9% | 989.0 / 2.8 | 276 | coding (977/1272 nt) | RPPX_13690 | DeoR faimly transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (152/121); total (154/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 296 total aligned reads displayed.
AGCAGGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCTAAGTGTCGGA > CP009974/3078431‑3078726 | agcagGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑t > 1:5010248/1‑151 (MQ=255)agcagGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑t < 1:4697294/151‑1 (MQ=255) gcagGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑g < 1:1326312/151‑1 (MQ=255) agGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑ggg < 1:2025054/151‑1 (MQ=255) ggACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑gggg < 2:4428844/151‑1 (MQ=255) gACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑ggggg < 2:425727/151‑1 (MQ=255) caccTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑gggggggc < 2:3270144/151‑3 (MQ=255) cTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑G‑‑gggggggcgac > 2:1395552/1‑146 (MQ=255) cACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGt > 1:4032939/1‑151 (MQ=255) acggctgTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGtt < 2:956601/148‑1 (MQ=255) aCTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGtt > 1:5060638/1‑151 (MQ=255) ctgctgTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGttt > 1:3227666/1‑151 (MQ=255) ctgctgTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGttt < 1:2373406/151‑1 (MQ=255) tgcggTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTtg < 2:3888241/151‑1 (MQ=255) tgTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTtgctg > 1:4873009/1‑151 (MQ=255) ttCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTtgctgtg > 1:379566/1‑151 (MQ=255) ccTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTAGATCAGCGTGGCCGACCGATTACGCCCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTcgctgtgct > 2:4998658/1‑151 (MQ=255) tCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGtgctgc > 1:3916279/1‑151 (MQ=255) gACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGctgctg > 2:620043/1‑151 (MQ=255) cAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGAc > 1:41223/1‑151 (MQ=255) cAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGAc > 1:5182807/1‑151 (MQ=255) aGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACg < 1:2172298/151‑1 (MQ=255) cACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTg < 2:1960065/151‑1 (MQ=255) aGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATAcgc < 2:4343009/151‑1 (MQ=255) cAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACgcgc > 2:2458745/1‑151 (MQ=255) cAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCACCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACgcgc > 2:1774081/1‑151 (MQ=255) aGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCa > 1:3984601/1‑151 (MQ=255) aGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCa > 1:2281986/1‑151 (MQ=255) aaCGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGAc < 1:3329686/151‑1 (MQ=255) aCGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACg < 1:2464528/151‑1 (MQ=255) cGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGc > 2:2940465/1‑151 (MQ=255) gACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGcc > 2:1326812/1‑151 (MQ=255) acacCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCg > 2:4743446/1‑151 (MQ=255) cccTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAac < 1:3451808/151‑1 (MQ=255) cccTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAac < 1:3070724/151‑1 (MQ=255) ccTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAaca < 2:340427/151‑1 (MQ=255) ggCGACGCCGTGGGTGACGAGGTGTTGATCAGCGTTGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACAtt < 2:3144350/151‑1 (MQ=255) ggCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGCCCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCCAGGACGCCGAACACAtt > 2:1629185/1‑151 (MQ=255) ggCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACAtt > 1:4360538/1‑151 (MQ=255) ggCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACAtt > 1:4533752/1‑151 (MQ=255) aCGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCg < 2:3771190/151‑1 (MQ=255) gCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCgag > 1:1698258/1‑151 (MQ=255) gCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCgag < 1:744428/151‑1 (MQ=255) cGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGagaa > 2:3471733/1‑151 (MQ=255) gTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGagaag < 1:2973501/151‑1 (MQ=255) gTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGagaag > 2:2166500/1‑151 (MQ=255) gggTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGAt > 1:1017154/1‑151 (MQ=255) ggTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATa > 1:66638/1‑151 (MQ=255) ggTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATa > 1:2831649/1‑151 (MQ=255) gTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAg > 1:1311130/1‑151 (MQ=255) gACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGtt > 2:1272475/1‑151 (MQ=255) gAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTgac > 2:769274/1‑149 (MQ=255) aGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCa < 2:2737641/151‑1 (MQ=255) aGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCa > 1:996371/1‑151 (MQ=255) tgtTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCa > 2:3521675/1‑151 (MQ=255) gtTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCAt > 2:2443713/1‑151 (MQ=255) ttGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATg < 1:1581829/151‑1 (MQ=255) gATCAGCGTGGCCGGACGCGGGCGCGCCCAGATGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGAGGAGTGTGCTGTGCTGCTGACGCATTTGCATACGCGCAAGGACGCCGAACACATTGGCGAGAAGATAGTTGCCAGCATGaa < 2:1923161/151‑1 (MQ=255) gATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGaa < 1:874517/151‑1 (MQ=255) aTCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TGGGGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGaa < 1:2602423/151‑1 (MQ=255) cAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCt < 1:2660035/151‑1 (MQ=255) ggCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTg < 2:460803/150‑1 (MQ=255) aGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTg > 1:4241328/1‑151 (MQ=255) gCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGc > 1:570168/1‑151 (MQ=255) tGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCgg > 2:4842090/1‑151 (MQ=255) ggCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCCGG‑‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGt < 2:2571710/151‑1 (MQ=255) ggCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGt < 2:494717/151‑1 (MQ=255) ggCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGt > 1:1464553/1‑151 (MQ=255) gCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTg > 2:870694/1‑151 (MQ=255) gCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTg < 2:91560/151‑1 (MQ=255) cGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCa > 2:1106323/1‑151 (MQ=255) gAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCGTACGCGCAAGGACCACGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCaa > 2:5021734/1‑151 (MQ=255) gAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCaa > 1:1082891/1‑151 (MQ=255) gAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCaa > 1:119643/1‑151 (MQ=255) aaCGTGTGCGCGCCCAGCTGCGCGAGCAAGACTTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAAc < 2:404807/151‑1 (MQ=255) aaCGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAAc > 2:2186518/1‑151 (MQ=255) aCGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACt > 2:5212872/1‑151 (MQ=255) aCGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACt > 1:3613058/1‑151 (MQ=255) aCGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACt < 1:897038/151‑1 (MQ=255) tgtgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGa < 1:5075674/151‑1 (MQ=255) tgtgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGa > 2:262314/1‑151 (MQ=255) gtgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGAc > 2:229369/1‑151 (MQ=255) gtgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGAc < 1:3957741/151‑1 (MQ=255) tgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACa < 1:870694/151‑1 (MQ=255) tgCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACa < 2:1698511/151‑1 (MQ=255) cgcgcCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGCGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGt > 2:2347962/1‑151 (MQ=255) gcgcCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTg < 2:3809706/151‑1 (MQ=255) gcgcCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTg > 1:1800686/1‑151 (MQ=255) cccAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGcc < 2:2422246/151‑1 (MQ=255) ccAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCt > 1:1243605/1‑151 (MQ=255) gCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAg < 1:5155160/151‑1 (MQ=255) gCTGCGCGAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAg < 2:3708677/151‑1 (MQ=255) gAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTcc > 1:2781047/1‑151 (MQ=255) gAGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTcc < 1:1229816/151‑1 (MQ=255) aGCAAGACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCa < 2:2076148/151‑1 (MQ=255) gACCTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCGGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTTTCCACCTCg > 1:3777115/1‑151 (MQ=255) ccTGGTGGCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCt < 2:1503691/151‑1 (MQ=255) ggtggCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCTAAg > 1:3151459/1‑151 (MQ=255) tggCGCGCC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCTAAgtg < 1:3676994/151‑1 (MQ=255) cgcgcC‑TG‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCTAAGTGTCg > 2:3957563/1‑151 (MQ=255) | AGCAGGACCACCTGGCACTGCTGTTCCTCGACAGCGACCACTTCAAGCAGATCAACGACACCCTCGGCCACGCCGTGGGTGACGAGGTGTTGATCAGCGTGGCCGAACGTGTGCGCGCCCAGCTGCGCGAGCAAGACCTGGTGGCGCGCC‑T‑‑GGGGGGCGACGAGTTTGCTGTGCTGCTGACGCCTTTGCATACGCGCAAGGACGCCGAACACATTGCCGAGAAGATAGTTGCCAGCATGAAGCTGCCGGTGCAACTGGACAGTGGCCTCAGTGTCTCCACCTCGCTAAGTGTCGGA > CP009974/3078431‑3078726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |