| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 4,449,214 | (G)7→8 | coding (275/555 nt) | RPPX_19925 ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 4,449,207 | 1 | . | G | 99.6% | 827.8 / ‑3.3 | 230 | coding (282/555 nt) | RPPX_19925 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (101/128); total (102/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
Only 100 of 250 total aligned reads displayed.
CCCATCAGCGCGCGGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGACGGTGC > CP009974/4449058‑4449352 | cATCAGCGCGCGGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggg > 2:230730/1‑151 (MQ=255) aGCGCGCGGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggg > 1:4611948/1‑151 (MQ=255) gcgcgGTTGTCGTCGCCGGGCGCCACCAGCGCGGCGCCGCCGCTAGCCTGGGGCGTCGGTGGCATATCGCCGGAGACGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggggca < 2:3684177/151‑4 (MQ=255) cgcgGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggggcaa < 1:331488/151‑5 (MQ=255) cgcgGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggggcaa > 1:5195653/1‑147 (MQ=255) cgcgGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTAAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggggcaa < 1:2415818/151‑5 (MQ=255) gcgGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑ggggggggcaag > 1:3174325/1‑146 (MQ=255) gggtgggcgtcgAGGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGt < 2:4679766/144‑1 (MQ=255) gTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGc < 2:831893/151‑1 (MQ=255) gTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGc > 2:1545799/1‑151 (MQ=255) ttGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCg > 2:1353125/1‑151 (MQ=255) tGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGt > 1:4315360/1‑151 (MQ=255) cgtcgACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCgg > 1:3697874/1‑151 (MQ=255) cgACGGTGGCCAGCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGtt < 2:66090/151‑1 (MQ=255) cgACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGtt < 2:3153728/151‑1 (MQ=255) aCGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGc > 1:2165435/1‑151 (MQ=255) aCGGTCGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTGGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGc < 1:2653309/151‑1 (MQ=255) ggCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAgctg < 2:4522347/151‑1 (MQ=255) gCCACCCGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAgctgc < 1:414338/151‑1 (MQ=255) accaGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCtgctgc < 2:2881718/151‑1 (MQ=255) ccaGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTgcg > 1:651757/1‑151 (MQ=255) cgcgGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTc < 1:1226131/151‑1 (MQ=255) ggcgCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGcc > 1:1043834/1‑151 (MQ=255) cgccgccgcCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCa > 1:2188663/1‑151 (MQ=255) cgccgccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGc < 1:558997/151‑1 (MQ=255) cgccgccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGc < 1:1370147/151‑1 (MQ=255) gccgccAGCCTGGGGGGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCt < 2:1947248/151‑1 (MQ=255) cgccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCa > 1:5139392/1‑151 (MQ=255) cgccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCa > 1:922158/1‑151 (MQ=255) gccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCaa > 2:706268/1‑151 (MQ=255) ccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAg > 1:1664043/1‑151 (MQ=255) ccAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAg < 1:4875772/151‑1 (MQ=255) cAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGc < 2:2188663/151‑1 (MQ=255) gCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGccc < 2:1034315/151‑1 (MQ=255) cTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGCCCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCgg < 1:1536684/151‑1 (MQ=255) cTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCgg > 1:4930558/1‑151 (MQ=255) cTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑GGGGGGGACAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCgg > 2:5013910/1‑151 (MQ=255) tGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGt > 1:4351213/1‑151 (MQ=255) ggggCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGtt > 1:1570453/1‑151 (MQ=255) ggggCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGtt > 1:2304138/1‑151 (MQ=255) ggggCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGtt < 1:285700/151‑1 (MQ=255) gggCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGCGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTGGCCCAAGCTCAAGCCCGGTTg > 2:538241/1‑151 (MQ=255) ggCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGAGAGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGc < 2:2331439/151‑1 (MQ=255) cGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCa < 1:4755464/151‑1 (MQ=255) tCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGt < 2:1701642/151‑1 (MQ=255) aGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAATTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTAc > 1:170461/1‑151 (MQ=255) aGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTAc < 1:3012694/151‑1 (MQ=255) gTTGCATATCGACGGAGAGGGGTGATTGCTCCAGGCGGCGGGGCAGCGCGTCATCGTCCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTAcc < 2:2674206/151‑1 (MQ=255) tggCATAGCGAGGGACAGGGGTGATGGCTCCAGGCGGCGGGCCAGCGCGGCATGGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCa < 2:4057827/149‑1 (MQ=255) tCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATaa > 1:396011/1‑151 (MQ=255) cGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAg < 1:549568/151‑1 (MQ=255) gACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAgg > 1:1852606/1‑151 (MQ=255) cGGAGAGGGGTGAGTGCGCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCa < 1:4804479/151‑1 (MQ=255) cGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCa < 1:3210369/151‑1 (MQ=255) cGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCa > 1:2796295/1‑151 (MQ=255) aGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCt > 2:1093225/1‑151 (MQ=255) aGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCt < 1:3494518/151‑1 (MQ=255) aGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCt > 2:4579482/1‑151 (MQ=255) ggggTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCtt > 2:1502752/1‑151 (MQ=255) ggTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTa > 1:336095/1‑151 (MQ=255) gTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTAc < 2:590377/151‑1 (MQ=255) tGATTGCGCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACt < 2:3563876/151‑1 (MQ=255) aTTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGt > 1:4539192/1‑151 (MQ=255) tGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTg > 2:1226597/1‑151 (MQ=255) tGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTg < 2:563108/151‑1 (MQ=255) tGCTCCAGGCGGCGGGCCAGCGCGGCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTg < 2:3095857/151‑1 (MQ=255) cTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCa > 2:387290/1‑151 (MQ=255) cAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTg < 2:3174325/151‑1 (MQ=255) cAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTg > 1:3248545/1‑151 (MQ=255) cAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTg < 1:3866087/151‑1 (MQ=255) ggcggcGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGaa < 1:2524755/151‑1 (MQ=255) ggcggcGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGGCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGaa < 2:1344408/151‑1 (MQ=255) ggcggGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCg < 1:4388901/151‑1 (MQ=255) gggCCAGCGCGTCATCGACCGAGGCATACAGTACGACGTGGGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGa < 2:3945368/151‑1 (MQ=255) ggCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCCGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATCCGGCATGCCTTTACTGTTGCACTGAAGCGGGaa > 1:1630587/1‑151 (MQ=255) ccAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACa < 2:1994419/151‑1 (MQ=255) aGCGCGTGATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGt < 2:2786215/151‑1 (MQ=255) gcgTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGTATGCCTTTACTGTTGCACTGAAGCGGGTACAGTgcg > 1:784114/1‑151 (MQ=255) gcgTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTgcg > 2:923531/1‑151 (MQ=255) gTCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTgcggc > 1:2953809/1‑151 (MQ=255) gTCAGCGACGCGGGGATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTgcggc < 2:4942669/151‑1 (MQ=255) tCATCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTgcggcg < 2:473845/151‑1 (MQ=255) aTCGACCCAGGCATACAGTACGACGTGTGTCGGGGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGa > 1:2619812/1‑151 (MQ=255) aTCGACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAg > 2:4733323/1‑151 (MQ=255) tCGACCGAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGc < 2:738058/151‑1 (MQ=255) ggACCCAGGCATACAGTACGACGTGGGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCt < 2:3030419/150‑1 (MQ=255) gACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGCGCTc < 2:4315360/151‑1 (MQ=255) gACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTc < 1:2914766/151‑1 (MQ=255) gACCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTc > 1:3092601/1‑151 (MQ=255) aCCCAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCg < 1:2326651/151‑1 (MQ=255) cccAGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGa > 1:2128106/1‑151 (MQ=255) aGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCa < 2:2146405/151‑1 (MQ=255) aGGCATACAGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCa < 1:2264687/151‑1 (MQ=255) aGTACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGCGCGGCGCGCACCACCATGTCgcgc > 2:5070115/1‑151 (MQ=255) tACGACGTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTc < 2:868306/151‑1 (MQ=255) gagggcgTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTGGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTc < 2:3367943/146‑1 (MQ=255) ggcgTGTGTCG‑GGGGGGG‑CGAGGGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGAc < 2:3552591/149‑1 (MQ=255) gacgTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGAc > 2:178081/1‑151 (MQ=255) acgTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGACg > 1:268451/1‑151 (MQ=255) cgTGTGTCG‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGACgg > 1:2788147/1‑151 (MQ=255) | CCCATCAGCGCGCGGTTGTCGTCGACGGTGGCCACCAGCGCGGCGCCGCCGCCAGCCTGGGGCGTCAGTTGCATATCGACGGACAGGGGTGATTGCTCCAGGCGGCGGGCCAGCGCGTCATCGACCCAGGCATACAGTACGACGTGTGTC‑‑GGGGGGG‑CAAGTGCGTCGGGTTGCAGCTGCTGCGCTTCGCCCAAGCTCAAGCCCGGTTGCCAGTACCAGCCATAAGGCATGCCTTTACTGTTGCACTGAAGCGGGAACAGTGCGGCGAGCTCGACCAGGTCGCGCTCGACGGTGC > CP009974/4449058‑4449352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |