| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 605,455 | (C)7→8 | coding (914/924 nt) | RPPX_02580 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 605,448 | 1 | . | C | 96.2% | 839.6 / 25.1 | 240 | coding (907/924 nt) | RPPX_02580 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (2/7); new base C (115/116); total (117/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 258 total aligned reads displayed.
CTCAAGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGAGTTGCAGGT > CP009974/605298‑605594 | tCAAGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑c < 2:3184539/151‑1 (MQ=255) cAAGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑cc > 1:369323/1‑151 (MQ=255) aaGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑ccc > 1:372811/1‑151 (MQ=255) aaGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCGGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑ccc < 1:3929033/151‑1 (MQ=255) aaGACATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATGCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑ccc < 2:3115341/151‑1 (MQ=255) ttGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑cccc‑cccca > 2:931929/1‑149 (MQ=255) tGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑cccc‑ccccac > 1:2379539/1‑148 (MQ=255) gCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGc < 2:584395/151‑1 (MQ=255) gCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGc > 2:4779367/1‑151 (MQ=255) aTCAGGGTGGCAGCGGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTgag < 1:4870221/151‑1 (MQ=255) aGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAgg < 1:3379278/151‑1 (MQ=255) aGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAgg > 2:1286284/1‑151 (MQ=255) ggTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGAc < 2:349582/151‑1 (MQ=255) gTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCCCAAGCCACAGAGGaac > 2:4815072/1‑149 (MQ=255) gTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGccc > 2:4896952/1‑151 (MQ=255) gTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGAcc > 2:3381845/1‑151 (MQ=255) tGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACcg < 2:4010682/151‑1 (MQ=255) gCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGCGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACCAGCCTGAGAGCACcgcg > 2:3633800/1‑151 (MQ=255) aGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGcc > 2:1114931/1‑151 (MQ=255) gccgccACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGccc < 2:369323/151‑1 (MQ=255) ccgccACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCa > 1:1144074/1‑151 (MQ=255) ccgccACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGACGACCGCGcccc > 2:482796/1‑150 (MQ=255) ccacccacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATgg > 1:4929879/1‑151 (MQ=255) cacccacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGc > 2:4197427/1‑151 (MQ=255) cacccacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGc > 1:2878483/1‑151 (MQ=255) cccacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTa < 2:2858505/151‑1 (MQ=255) ccacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTa > 1:945109/1‑151 (MQ=255) cacTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAt < 1:4439144/151‑1 (MQ=255) acTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAtt > 1:4193401/1‑151 (MQ=255) acTGTTCTACCTTTATCCGAGCAAAGAGAAGACCCTGGGCCCCGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCAGTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAtt < 2:3325187/151‑1 (MQ=255) cTGTTCTACCTTTATTCGATCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAttt < 1:1811576/151‑1 (MQ=255) cTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAttt < 1:2602762/151‑1 (MQ=255) cTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAttt < 1:2343300/151‑1 (MQ=255) cTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTAttt < 1:4263099/151‑1 (MQ=255) ttCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGa > 1:1736700/1‑151 (MQ=255) ctgccTTTATGCGGGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAac < 2:2543634/148‑1 (MQ=255) cTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCACGGCCTATTTCGAac > 2:716670/1‑151 (MQ=255) tACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAaca > 1:453718/1‑151 (MQ=255) aCCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAacac < 1:2275578/151‑1 (MQ=255) ccTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACg < 1:4954052/151‑1 (MQ=255) aTTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGa > 1:5166305/1‑151 (MQ=255) aTTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGa > 1:3419040/1‑151 (MQ=255) cAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGc > 2:537210/1‑151 (MQ=255) gaagaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCAtt < 2:3236655/151‑1 (MQ=255) aagaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTa < 2:1657632/151‑1 (MQ=255) aagaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAAGATGCACGCTGCAtaa > 2:4645484/1‑149 (MQ=255) agaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGCACACGAAGGATGCACGCTGCATTAc > 2:2693167/1‑151 (MQ=255) agaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTAc < 1:3608460/151‑1 (MQ=255) agaCCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATGTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGACTGAGAGGACAGCGCCCAGGGCCTATTTCGAACACGAAGGATGCACGCTGCATTAc < 1:1872079/151‑1 (MQ=255) ccTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAgg > 1:790670/1‑151 (MQ=255) cTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACGAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGa < 2:2353128/151‑1 (MQ=255) tGGGACCGGCCACGCAGATTCTCATCCACCTGCTGCGCAATTTCGACACAGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGaa < 1:398651/151‑1 (MQ=255) gCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCAAACACGAAGGATGCACGCTGCCTTACGAGGAatat > 2:43977/1‑151 (MQ=255) cccGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGGAGCCCCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAatat < 1:472218/151‑1 (MQ=255) ccGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATgg < 2:4325172/151‑1 (MQ=255) ggCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGcc > 1:4156218/1‑151 (MQ=255) gCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCa < 1:3275101/151‑1 (MQ=255) gCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCa < 1:5193344/151‑1 (MQ=255) cACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAgg < 2:2073010/151‑1 (MQ=255) cACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAgg < 2:2957552/151‑1 (MQ=255) aCGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGACGGATGCACGCTGCATCACGAGGAATACGGCCAggg > 2:2708345/1‑151 (MQ=255) cGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTCTTTCGAACACGAAGGATGCACGCTGCAATACGAGGAATATGCCCAGGGc > 2:1815627/1‑151 (MQ=255) cAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGa > 2:1597789/1‑151 (MQ=255) aGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGaa < 1:1286284/151‑1 (MQ=255) ttCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAAccc < 1:931929/151‑1 (MQ=255) aTCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGt > 1:4610702/1‑151 (MQ=255) cGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgc > 1:645612/1‑151 (MQ=255) cccTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctg < 2:1384095/150‑1 (MQ=255) aCCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctg > 1:1595794/1‑151 (MQ=255) aCCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctg < 2:1995177/151‑1 (MQ=255) ccTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgc > 1:502595/1‑151 (MQ=255) ccTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgc > 1:1947178/1‑151 (MQ=255) ctgctgCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgct < 1:4337218/151‑1 (MQ=255) ctgctgCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgct < 1:1313063/151‑1 (MQ=255) tgctgcGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgctg < 1:2929076/151‑1 (MQ=255) ggctgcGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGtgctgctg < 2:1042794/150‑1 (MQ=255) ctgcGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTCCGAGGCATATCGCCCGGGCGCACCCTCCGtgcccccgcc > 1:249647/1‑144 (MQ=255) gcgcAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACg < 1:577410/151‑1 (MQ=255) gcAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGc < 2:4756096/151‑1 (MQ=255) gcAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCCATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGc > 2:1943298/1‑151 (MQ=255) agtgtCGACACCGCGCCGCGGGACGTGCCCTCCGGAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGccg < 2:3749984/147‑2 (MQ=255) aaTTTCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCt > 2:4437562/1‑151 (MQ=255) tttCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTgg > 2:2910065/1‑151 (MQ=255) tCGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGc > 1:747374/1‑151 (MQ=255) cGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGcc > 2:5091128/1‑150 (MQ=255) cGACACCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCt < 2:498215/151‑1 (MQ=255) acacCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTcc < 2:2260208/151‑1 (MQ=255) acCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAg > 2:3070678/1‑151 (MQ=255) acCGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAg > 2:3873042/1‑151 (MQ=255) ccGCGCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGt < 2:745132/151‑1 (MQ=255) cgcgCCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGtt > 1:202446/1‑151 (MQ=255) cgcCACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGc < 1:3063145/151‑1 (MQ=255) gcCACTGGACGTGCCCTTCGCAG‑‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCa < 1:2357822/151‑1 (MQ=255) ncACTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGccc > 1:279238/2‑150 (MQ=255) cTGGACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGa > 1:323664/1‑151 (MQ=255) ggACGTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACt < 1:1351126/151‑1 (MQ=255) gTGCCCTTCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGa < 1:4743598/151‑1 (MQ=255) ttCGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGAGTTGCa < 2:2117821/151‑1 (MQ=255) cGCAGC‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGAGTTGCAgg > 1:1104242/1‑151 (MQ=255) gCAG‑‑CCCCACCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGAGTTGCAGGt < 2:1874389/151‑1 (MQ=255) | CTCAAGCCATTGCCGCTGGATCAGGGTGGCAGCCGCCACCCACTGTTCTACCTTTATTCGAGCAAAGAGAAGACCCTGGGCCCGGCCACGCAGATTCTCATCGACCTGCTGCGCAATTTCGACACCGCGCCACTGGACGTGCCCTTCGCAG‑‑CCCC‑CCCACAAGCCTGAGAGGACCGCGCCCATGGCCTATTTCGAACACGAAGGATGCACGCTGCATTACGAGGAATATGGCCAGGGCGAACCCTTGGTGCTGCTGCACGGCCTGGGCTCCAGTTGCCAGGACTGGGAGTTGCAGGT > CP009974/605298‑605594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |