Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 769,699 (G)9→10 intergenic (‑121/+347) RPPX_03350 ← / ← RPPX_03355 acetolactate synthase/5S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009974769,6901.G80.5% 364.7 / 99.8 128intergenic (‑112/+356)RPPX_03350/RPPX_03355acetolactate synthase/5S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base . (15/10);  new base G (71/32);  total (86/42)
Fisher's exact test for biased strand distribution p-value = 4.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

TTCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGCTCACCGTCGCCACCGC  >  CP009974/769540‑769833
                                                                                                                                                         |                                                                                                                                                 
ttCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑a                                                                                                                                                    <  1:2633193/151‑1 (MQ=255)
ttCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑a                                                                                                                                                    <  2:2396339/151‑1 (MQ=255)
 tCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑g                                                                                                                                                 >  2:2476490/1‑151 (MQ=255)
 tCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGGCTTGACG‑T‑A‑‑g                                                                                                                                                 >  2:2475881/1‑151 (MQ=255)
  ccAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGACGTCCAGAAATGCGCAGCACGGTACCCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTCGCCG‑T‑A‑‑gg                                                                                                                                                >  2:1632753/1‑151 (MQ=255)
  ccAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gg                                                                                                                                                <  1:4452466/151‑1 (MQ=255)
  ccAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gg                                                                                                                                                <  2:4407669/151‑1 (MQ=255)
  ccAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGCCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gg                                                                                                                                                >  2:5052879/1‑151 (MQ=255)
      gCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg                                                                                                                                            <  2:1529384/151‑1 (MQ=255)
      gCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg                                                                                                                                            <  1:2877343/151‑1 (MQ=255)
        aTTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGACCCAAAGTCTTGCCG‑T‑A‑‑gcgggg‑gg                                                                                                                                         >  2:2380190/1‑151 (MQ=255)
         ttGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggg                                                                                                                                        >  2:3134/1‑151 (MQ=255)
           gCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggggg                                                                                                                                      >  1:693449/1‑149 (MQ=255)
           gCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggggc                                                                                                                                      >  1:2986637/1‑149 (MQ=255)
           gCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggggc                                                                                                                                      <  1:893015/151‑3 (MQ=255)
           gCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGAGGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggggc                                                                                                                                      <  2:57667/151‑3 (MQ=255)
             acaACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑gggggg‑ggggcgg                                                                                                                                    >  1:4271045/1‑147 (MQ=255)
              caACGACAGCGGCGGCCACGGCCATCTTGCTTGCTACCTCAAGTGATGGGACCGGGGAAGTCCAGAAATGCGCACCACGGTACGCTCGCATCCCCAGTTCCACGAGCAAACGTGCCCCGAACCAAAGTCGTGACG‑A‑T‑‑GGGAGG‑GCGCtggg                                                                                                                                   >  2:445597/1‑150 (MQ=255)
                aCGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGaaa                                                                                                                                 <  2:918875/151‑1 (MQ=255)
                 cGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGaaa                                                                                                                                 <  1:3340189/151‑1 (MQ=255)
                 cGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGaaa                                                                                                                                 >  1:3672983/1‑151 (MQ=255)
                 cGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGaaa                                                                                                                                 >  1:4740265/1‑151 (MQ=255)
                 cGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGaaa                                                                                                                                 >  2:1806432/1‑151 (MQ=255)
                  gACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAg                                                                                                                                >  2:4863842/1‑151 (MQ=255)
                   aCATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGt                                                                                                                               <  1:4462507/151‑1 (MQ=255)
                     aTCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCa                                                                                                                             >  2:4122507/1‑151 (MQ=255)
                     aTCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCAc                                                                                                                            >  2:4756817/1‑151 (MQ=255)
                           ggcCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTaa                                                                                                                       >  1:1095699/1‑151 (MQ=255)
                           ggcCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTaa                                                                                                                       >  1:495455/1‑151 (MQ=255)
                            gcCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AGGGGGGGG‑GGGCGGGAAAGTCACGTTaa                                                                                                                       >  1:4807488/1‑151 (MQ=255)
                            gcCTGGGCCATCTTGCTTGCAACCTCAAGGGAGGGGAGGGGGGAAGTCCAGAAAGGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAAt                                                                                                                      <  1:3997630/151‑1 (MQ=255)
                             ccTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATg                                                                                                                     >  2:2355841/1‑151 (MQ=255)
                             cattGGCCCTCTAGCGTGCTACCTCAAGTGCCGGGGGGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCACCGCACGGTCCAGGGGCAAAAGTGCCCCGAGCCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGCAAGTCACGTTAATg                                                                                                                     <  2:165413/149‑1 (MQ=255)
                               ttGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGCACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCCGGCAAGTCACGGTAATGCt                                                                                                                   >  2:1892631/1‑151 (MQ=255)
                               ttGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCt                                                                                                                   >  2:1892672/1‑151 (MQ=255)
                               ttGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GTGGGG‑GGGCGGGAAAGTCACGTTAATGCtt                                                                                                                  >  2:1363067/1‑151 (MQ=255)
                                tGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCtt                                                                                                                  >  1:230483/1‑151 (MQ=255)
                                 ggCCATCTTGCTTGCTACCTCAAGTAGTGGGACGGTGGAAGACCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTc                                                                                                                 <  1:1389715/151‑1 (MQ=255)
                                  gCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCg                                                                                                                >  1:2734399/1‑151 (MQ=255)
                                    cATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTg                                                                                                              >  1:3840584/1‑151 (MQ=255)
                                    cATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTg                                                                                                              >  1:1953920/1‑151 (MQ=255)
                                    cATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTg                                                                                                              >  2:3286571/1‑151 (MQ=255)
                                     aTCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTgg                                                                                                             >  1:4713196/1‑151 (MQ=255)
                                        ttgcttgcTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAgg                                                                                                          >  1:2529745/1‑151 (MQ=255)
                                        ttgcttgcAACAGCAAGTGATGGGACGGGGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTGCAGGAGCAAAAGTGCCCAGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAgg                                                                                                          <  1:2693017/151‑1 (MQ=255)
                                          gcttgctACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGcc                                                                                                        >  2:2191146/1‑151 (MQ=255)
                                             tgctAGCTCAGGTGGGGGGGCGGTGGAAGGCAAGAAGGGCGCAGCAGGGTACGCTGGCAGCGCCAGGTCGAGGAGCAAAGGTGCCCCGAACCAAGGGCTGGACG‑T‑GG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCAtt                                                                                                     <  2:3763641/151‑1 (MQ=255)
                                              gcgcccgcAAGTGAGGGGACGGGGGAGGCCCAGAAAGGCGCAGCACGGTACGCTGGCAACCCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACGTT‑G‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTc                                                                                                    <  1:5060411/144‑1 (MQ=255)
                                                  ccTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGcc                                                                                               <  2:4295967/151‑1 (MQ=255)
                                                    tCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCt                                                                                              >  2:1287039/1‑151 (MQ=255)
                                                      aaGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGc                                                                                           >  2:1079055/1‑151 (MQ=255)
                                                         tGAGGGGACGGTGGAGGTGCGGAAATGCGCAGACGGGTGCGCTGGGATCGCCAGGTCCAGGAGCAAAGGTGCGCGGTACCAAGGTCTTGCTG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGt                                                                                         <  2:539514/151‑1 (MQ=255)
                                                         ggATGGGAGGGTGGAAGTCAAGAAATGCGCAGCAGAGGACGCGGGCATCGCCAGATCCAGGGGGAAGAGGGCCCCGAACCAAAGTGATGAGG‑TGG‑‑GGGGGG‑GGGCGGAAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGt                                                                                         <  1:312101/150‑1 (MQ=255)
                                                           aTGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCACAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAACGCTTCGTGGCGGCCACTCCAGCCTGGCggcc                                                                                       >  2:4414096/1‑148 (MQ=255)
                                                           aTGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCGAGCCTGGCGTcc                                                                                       >  2:4913917/1‑150 (MQ=255)
                                                             gggACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCa                                                                                     >  1:4422150/1‑151 (MQ=255)
                                                              ggACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCCTCGCAc                                                                                    >  2:2763177/1‑151 (MQ=255)
                                                                  ggaggAAGTGAAGAGGTGCGGAGCACGGTGCGCTGGGATCGCCAGGTCCAGGAGCAAAAGTGCCCCGGACCAAGGTCTTGAGG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATc                                                                                <  1:3520923/148‑1 (MQ=255)
                                                                  ggTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATc                                                                                >  1:2387543/1‑151 (MQ=255)
                                                                  ggTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATc                                                                                >  2:2073678/1‑151 (MQ=255)
                                                                     ggAGGTCCAGAAAGGCGCAGCACGGGACGCGGGCGTGGCCAGGTCGAGGAGCAAAGGTGCGCGGTACGAAGGTCTTGACG‑G‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCctc                                                                             <  2:3471853/151‑1 (MQ=255)
                                                                      aaaatcaaGAAAGGCGCAACACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑A‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCctct                                                                            <  2:1404855/144‑1 (MQ=255)
                                                                          tCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCTTGGAGGCCATTCTAGCCTGGCGTCGAACCATCCTCTGTAg                                                                        >  2:2420036/1‑151 (MQ=255)
                                                                          gccAGAAGTGCGCAGCACGGTACGCTGGCATCGCCAGGGCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGAGG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAg                                                                        <  2:368525/150‑1 (MQ=255)
                                                                           ccAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGa                                                                      <  1:1883396/151‑1 (MQ=255)
                                                                               aaaTGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCg                                                                   >  2:618968/1‑151 (MQ=255)
                                                                               aaaTGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCg                                                                   >  1:938015/1‑151 (MQ=255)
                                                                                aaTGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCgg                                                                  >  1:3285969/1‑151 (MQ=255)
                                                                                 aTGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCggg                                                                 >  1:4721727/1‑151 (MQ=255)
                                                                                     ggagcaCGGGAGGCGGGCGTCGCCAGGACCAGGGGGAAGCGTGCGCCGAACCAGAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTa                                                             <  1:4899798/149‑1 (MQ=255)
                                                                                     gcagcaCGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTa                                                             >  1:2539869/1‑151 (MQ=255)
                                                                                      cagcaCGGTACGCTGGCATCGCGAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTAcc                                                           <  2:3191194/151‑1 (MQ=255)
                                                                                       agcaCGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGGTTAcc                                                           >  2:3939380/1‑151 (MQ=255)
                                                                                         caCGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCcg                                                         >  1:4130042/1‑151 (MQ=255)
                                                                                           cGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCcgcg                                                       >  2:1868962/1‑151 (MQ=255)
                                                                                             gTACGCTGGGATCGCCAGGTGCAGGAGCAAAAGTGGCCCGAGCCAAAGGCGTGGCG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGaa                                                     <  2:3384349/151‑1 (MQ=255)
                                                                                             gTACGCTGGCATCGCCAGGTGAAGGAGGAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGaa                                                     <  2:1047016/151‑1 (MQ=255)
                                                                                               aCGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAaga                                                   >  2:1496245/1‑151 (MQ=255)
                                                                                                cGCTGGCATGGCCGGGTCCAGGAGCAAAAGTCCCCGGAACCAAAGTCTGGACG‑T‑A‑‑GGGGGGAGGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAagag                                                  <  1:4112633/151‑1 (MQ=255)
                                                                                                cGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAgg                                                 <  2:263892/151‑1 (MQ=255)
                                                                                                cGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAgg                                                 >  2:4243684/1‑151 (MQ=255)
                                                                                                   tGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAggcc                                               >  1:3409929/1‑151 (MQ=255)
                                                                                                     gCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAggccggc                                            >  1:1709648/1‑151 (MQ=255)
                                                                                                       aTCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAggccggcc                                           >  1:2568546/1‑151 (MQ=255)
                                                                                                        tCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCCCTGGAGGAGCGGGTTTACCCGCGAAGAGGCCGGccc                                          >  2:3051432/1‑151 (MQ=255)
                                                                                                          gCCAGGTCCAGAAGCAAAAGTGCCCCGAACCAAGGTCTTGACG‑G‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCctg                                        <  2:495455/151‑1 (MQ=255)
                                                                                                           ccAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCctgct                                      >  2:1843083/1‑151 (MQ=255)
                                                                                                             aGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTgg                                    >  1:4157584/1‑151 (MQ=255)
                                                                                                                tCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGcc                                  >  1:1297716/1‑151 (MQ=255)
                                                                                                                 ccAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGGCGGGCGGGAAAGCCACGTTAATGCTTCGTGTAGGCCCTTCTAGCCTGGCGAGGCACCAACCCCAGTAGGAGCGGGAGTACCCGCGAACGGCGCGGCCCTGCTGACCa                                 >  2:2669445/1‑151 (MQ=255)
                                                                                                                  cAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCaa                                >  1:3292431/1‑151 (MQ=255)
                                                                                                                    ggAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtcc                             <  1:2252830/151‑3 (MQ=255)
                                                                                                                     gAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtcc                             >  1:1229683/1‑149 (MQ=255)
                                                                                                                         aaaaGTGCCCCGAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATTCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTCCCAc                         >  1:3039880/1‑151 (MQ=255)
                                                                                                                          aaaGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCCAcct                       >  1:3130681/1‑150 (MQ=255)
                                                                                                                                    gAACCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCCACCTGCCGTTCAc              >  1:2093828/1‑151 (MQ=37)
                                                                                                                                      aCCAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCCACCTGCCGTTCAccc            >  1:4808901/1‑150 (MQ=37)
                                                                                                                                       ccAAAGTCTTGACG‑T‑AG‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCCACCTGCCGTTCAccat           >  2:2930503/1‑149 (MQ=37)
                                                                                                                                           aGTCTGGGCG‑T‑AG‑GGGGGG‑GGGCGCGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCGGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCCACCTGCCGTTCACCATTGcc       <  2:3520392/151‑1 (MQ=21)
                                                                                                                                             tCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGCTCACCCGCGCCAcc    >  2:2525337/1‑151 (MQ=255)
                                                                                                                                                         |                                                                                                                                                 
TTCCAGGCATTGCACAACGACATCGGCGGCCTTGGCCATCTTGCTTGCTACCTCAAGTGATGGGACGGTGGAAGTCCAGAAATGCGCAGCACGGTACGCTGGCATCGCCAGGTCCAGGAGCAAAAGTGCCCCGAACCAAAGTCTTGACG‑T‑A‑‑GGGGGG‑GGGCGGGAAAGTCACGTTAATGCTTCGTGGAGGCCATTCTAGCCTGGCGTCGCACCATCCTCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGCTCACCGTCGCCACCGC  >  CP009974/769540‑769833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑