New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	418657 =	0 (0.000)	107 (0.570) +AAGAAGC	79/214	3.5	97.0%	intergenic (‑236/+415)	RPPX_01715/RPPX_01720	hypothetical protein/lipoprotein
	?	CP009974	= 4147133	7 (0.040)					intergenic (+385/‑636)	RPPX_18425/RPPX_18430	enoyl‑CoA hydratase/conjugal transfer protein TraR
Rejected: Coverage evenness skew score above cutoff.

CAAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418650‑418807        |                                                                                                                                                       gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAAGGCGACAACAAGTAACCa         >  2:4637682/8‑151 (MQ=255) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACaaaaa                <  1:354945/137‑1 (MQ=255) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACaaaaa                >  2:354945/8‑144 (MQ=255) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  1:3347805/8‑151 (MQ=25) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  1:3417035/8‑151 (MQ=25) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  2:4081009/8‑151 (MQ=25) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGTTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  1:1925727/8‑151 (MQ=11) gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  2:3803280/8‑151 (MQ=255)  cttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACACAAAGTAACCaa        >  1:4084737/7‑151 (MQ=255)  cttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaa        >  1:3836061/7‑151 (MQ=255)   ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:4352512/6‑151 (MQ=18)   ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCTCTTACGGCGGGTCACTTTTTGTCACATTCGACAAAAAGTAACCaaa       >  2:3708222/6‑151 (MQ=11)   ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:3656451/6‑151 (MQ=255)   ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  2:3708071/6‑151 (MQ=255)    tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  2:1484283/5‑151 (MQ=255)      ttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGTGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAGGTAACCaaaaaa    >  1:454581/3‑151 (MQ=255)        gcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATTGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGGGACAAAAAGTAAGCAAAacacc  >  2:4684470/1‑150 (MQ=11)        gcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACg  <  1:4249034/151‑1 (MQ=25)        |                                                                                                                                                       CAAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418650‑418807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.