New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009974 | 1897055 = | 14 (0.050) | 144 (0.670) +ACTCGACAAAACCCCGGTCAGCACTACC |
84/244 | 4.6 | 9.7% | intergenic (‑4833/‑3764) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
? | CP009974 | 1897574 = | 3296 (12.530) | intergenic (‑5352/‑3245) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTCCAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATCGTGGTCTGA‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAACTTGCCAACGTCC > CP009974/1896922‑1897081 | gTCCAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTTGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTCGAG‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTg > 1:1921933/1‑151 (MQ=11) tCCAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGc < 2:187562/151‑1 (MQ=11) tCCAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGc < 2:187869/151‑1 (MQ=11) ccAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGcc < 1:3784725/151‑1 (MQ=11) cAGCGCCTGGCTCACTTGCACAGTAAGGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccg < 2:3575127/151‑2 (MQ=11) aGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgc < 1:4369804/151‑3 (MQ=11) aGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgc < 2:2513225/151‑3 (MQ=11) cgcCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTCGAG‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgccc > 1:4300086/1‑147 (MQ=1) cgcCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgccc > 2:3223237/1‑147 (MQ=1) ccTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTCGAG‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgcccgt < 2:3598384/151‑7 (MQ=11) ccTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTCGAG‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgcccgt > 2:4782453/1‑145 (MQ=11) cTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgcccgtg > 2:3301096/1‑144 (MQ=11) aggaaggTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgcc > 1:1074089/1‑124 (MQ=1) aggaaggTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATGACCGTC‑GAGGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAGTTGccgcc < 2:1074089/127‑4 (MQ=11) | GTCCAGCGCCTGGCTCACTTTCACAGTAAAGGAAGGTTGCTGGTCTTCGGTCACATTGCCATTGCTGACAATGCTTACGGTGACGGCATCGATGCTGTCATTGATCGTGGTCTGA‑GCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAACTTGCCAACGTCC > CP009974/1896922‑1897081 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |