Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099742,564,3390GC70.7% 264.6 / 162.2 201intergenic (‑228/+98)RPPX_11415/RPPX_11420chemotaxis protein/chemotaxis protein
Reads supporting (aligned to +/- strand):  ref base G (32/27);  new base C (85/57);  total (117/84)
Fisher's exact test for biased strand distribution p-value = 5.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 212 total aligned reads displayed.

TGTAGGACTTGACCTGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTACCCAACCGC  >  CP009974/2564189‑2564485
                                                                                                                                                            |                                                                                                                                                   
      aCTTGACCTGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCaa                                                                                                                                               <  2:726192/151‑1 (MQ=255)
       cTTGACCTGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAAc                                                                                                                                              <  2:3968206/151‑1 (MQ=255)
       cTTGACCTGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAAc                                                                                                                                              <  2:1589385/151‑1 (MQ=255)
              tGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAAc                                                                                                                                       <  1:4662856/151‑1 (MQ=255)
                aTAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAAcgg                                                                                                                                     >  1:945741/1‑151 (MQ=255)
                 tAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAAcggc                                                                                                                                    <  1:2875427/151‑1 (MQ=255)
                      aGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTg                                                                                                                               <  2:4277097/151‑1 (MQ=255)
                               aGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTg                                                                                                                        >  1:3183062/1‑151 (MQ=37)
                                gTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAGATTGGcc                                                                                                                     >  2:3367039/1‑151 (MQ=255)
                                 ttCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑ATACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCa                                                                                                                    <  1:520087/151‑1 (MQ=255)
                                   cgtcgCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGc                                                                                                                  >  1:871646/1‑151 (MQ=255)
                                     tcgCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑Cg                                                                                                               >  1:2619372/1‑151 (MQ=255)
                                       gcgAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑AGGc                                                                                                             <  2:2394837/151‑1 (MQ=255)
                                                            cagcaaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGttt                                                                                          >  2:1320400/8‑151 (MQ=18)
                                                              tCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGCCGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCGACGGTGAAGGGCGGGGGGAGATTGGCCAGC‑AGGCCCGTCCCCTTCGCggggaaaccc                                                                                      >  1:2772563/1‑144 (MQ=18)
                                                              tCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGCGGAGATTGGCCAGC‑CGGGCCGGCCCATTAGCggggggcggg                                                                                      >  2:4181033/1‑144 (MQ=21)
                                                              gcaaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTAc                                                                                        <  1:3120770/146‑1 (MQ=21)
                                                              gcaaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTAc                                                                                        >  1:682572/6‑151 (MQ=18)
                                                               cgtgcccGGCCCATTTGCGGGTAAACCCGCGC‑‑TTACGCAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTAcc                                                                                       <  1:1849269/146‑1 (MQ=18)
                                                               caaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGCACGGCGGGTGGAGATTGGCCCGC‑CGGCTTGGCCCATTAGCGGGTTTAcc                                                                                       >  1:4305228/5‑151 (MQ=18)
                                                               caaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTAcc                                                                                       >  2:2299334/5‑151 (MQ=18)
                                                               caaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGATGACCCGCGAATACGGTGGTGCCTGCAACGGTGAACGGCGGGTGGAGATTTTCCAGC‑CGGCTTGGCCCATTAGCGGGTTTaac                                                                                       >  2:2026636/5‑149 (MQ=18)
                                                                aaggCCGGCCCATTCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTAccc                                                                                      >  2:678969/4‑151 (MQ=18)
                                                                    ccGGCCCCTTCGCGGGTGAACCCGCGC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGa                                                                                  <  1:3646028/151‑1 (MQ=25)
                                                                      ggcccattCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAag                                                                                >  2:3650558/7‑151 (MQ=21)
                                                                       gCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAAGGC‑CGGCCCATTCGCGGGTGAACCcgctcctacg                                                                             <  2:5068693/151‑8 (MQ=11)
                                                                          tctTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑AGGCGCGGCCCATTAGCGGGTGTACCCGCGCGGAGGgcc                                                                          >  2:3542160/1‑151 (MQ=18)
                                                                          cattCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGc                                                                            >  1:805714/3‑151 (MQ=21)
                                                                           ctTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAAcg                                                                                                                                      <  1:2485912/91‑1 (MQ=255)
                                                                           attCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGcc                                                                           >  1:1678685/2‑151 (MQ=25)
                                                                            ttCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGccc                                                                          >  2:4629355/1‑151 (MQ=21)
                                                                            ttCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGCATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑AGGCGCGGCCCCTTCGCGGGTGTACACGCGCagacgacggc                                                                        >  2:3831069/1‑144 (MQ=17)
                                                                             tCGCGGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTCTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCg                                                                         <  1:3542160/151‑1 (MQ=25)
                                                                              ctcgGGTGAACCCCCTCCTCTACGACCATCTGCGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGa                                                                        <  2:561014/149‑1 (MQ=18)
                                                                               gcgGGTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGAc                                                                       >  1:2678485/1‑151 (MQ=25)
                                                                                cgGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGttt                                                                                          >  1:1003036/1‑129 (MQ=255)
                                                                                cgGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGttt                                                                                          <  2:1003036/129‑1 (MQ=255)
                                                                                  ggTGAACCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCgg                                                                    >  1:1616305/1‑151 (MQ=25)
                                                                                    tgaaCCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGc                                                                  <  1:2330328/149‑1 (MQ=25)
                                                                                     gaaCCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCTGCGAAGAGGCGCGGCCGGGCg                                                                 >  1:1337887/2‑151 (MQ=21)
                                                                                     gaaCCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCg                                                                 >  1:2407874/2‑151 (MQ=25)
                                                                                      aaCCCGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGa                                                                >  2:1302562/1‑151 (MQ=25)
                                                                                        cccGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGAcc                                                              >  1:4402932/1‑151 (MQ=25)
                                                                                         ccGCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCCACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CCGCTTGGCCCATTAGCGGGCTTACCCCCGAAGACGCCCCACCgcgcccccc                                                             >  2:2467594/1‑146 (MQ=18)
                                                                                          cGCTC‑‑CTACCAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGCCTACGGTGGTGCCGGCAACGGTGAACGGCGGGCGGAGATTGGCCCGC‑CGGCTTGGCCCATGAGCGGGTTTACCAGCGAAGAGCCCCGACCGGGCGACCGc                                                            >  2:3854006/1‑151 (MQ=21)
                                                                                           gCTC‑‑CTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCt                                                           >  1:4097438/1‑151 (MQ=25)
                                                                                            cTC‑‑CTACGAATGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTa                                                          <  1:757212/151‑1 (MQ=25)
                                                                                              c‑‑cTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCCGC‑CGGCCCGGCCCACTCGCGGGTGAACCCGCGCCGACGCCCGCCCGCGCGACCGcgtgtga                                                      >  2:2874121/1‑145 (MQ=14)
                                                                                                 ccaggaaggCCTGTGCATA‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGtt                                                       <  1:3831069/144‑1 (MQ=25)
                                                                                                 cTACGAAGGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGtt                                                       <  1:2349205/151‑1 (MQ=25)
                                                                                                     gacgGCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAAc                                                                                                                                       >  2:4021462/1‑68 (MQ=14)
                                                                                                      agggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGAt                                                  <  2:841079/149‑1 (MQ=25)
                                                                                                      aaggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGAt                                                  >  1:2242931/3‑151 (MQ=255)
                                                                                                      aaggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGAt                                                  >  1:1101866/3‑151 (MQ=25)
                                                                                                      aaggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGAt                                                  <  1:1979277/149‑1 (MQ=255)
                                                                                                       aggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATc                                                 >  1:1118710/2‑151 (MQ=255)
                                                                                                        ggCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATca                                                >  1:3141643/1‑151 (MQ=255)
                                                                                                         gCCTGTGC‑‑ATTTGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATcac                                               >  1:2277169/1‑151 (MQ=255)
                                                                                                          ccTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGc                                            >  2:865408/1‑151 (MQ=255)
                                                                                                               gtgcgtttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGcc                                           <  1:2699292/144‑1 (MQ=255)
                                                                                                               gtgcatttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGcc                                           <  2:1060273/144‑1 (MQ=255)
                                                                                                                tgcatttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCt                                          >  1:3342289/7‑151 (MQ=255)
                                                                                                                tgcatttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCt                                          <  1:2446510/145‑1 (MQ=255)
                                                                                                                 gcatttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTg                                         >  1:1277134/6‑151 (MQ=255)
                                                                                                                 gcatttgtgtgTAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTg                                         >  1:4822379/6‑151 (MQ=255)
                                                                                                                  cacttgtgtgTAGGAGCGGATTAACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGa                                        <  1:2557294/147‑1 (MQ=255)
                                                                                                                   aggtgtgtgTAGGAGCGGGTGGACCCGCGGATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGAGTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGaa                                       <  2:2772563/148‑1 (MQ=37)
                                                                                                                         gtgtAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGc                                                                                                                  >  1:3868659/1‑71 (MQ=25)
                                                                                                                         gtgtAGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGccc                                 >  2:1902989/1‑151 (MQ=255)
                                                                                                                           ggaGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCccaa                               <  1:4125446/149‑1 (MQ=255)
                                                                                                                            tAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAaga                                                                               <  2:3583544/102‑1 (MQ=255)
                                                                                                                             aGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCccaacc                             >  2:25985/1‑151 (MQ=255)
                                                                                                                             aGGAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCccaacc                             >  2:4318784/1‑151 (MQ=255)
                                                                                                                              ggAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGAcc                                                                      <  1:1057504/109‑1 (MQ=255)
                                                                                                                              ggAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCccaacca                            >  1:3926832/1‑151 (MQ=255)
                                                                                                                              ggAGCGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCCGGCGACCCCTAGGTCAGATCACAGCCTGCACCGCccaacca                            >  2:3502184/1‑151 (MQ=37)
                                                                                                                               gAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGa                                                                        >  2:2689795/1‑106 (MQ=255)
                                                                                                                                  cGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGCACCGCCCAacccaccc                        >  2:664144/1‑151 (MQ=255)
                                                                                                                                  cGGGTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAAccc                        <  1:218956/151‑1 (MQ=255)
                                                                                                                                   gggTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCt                       >  2:2358153/1‑151 (MQ=255)
                                                                                                                                   gggTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCt                       <  1:1300469/151‑1 (MQ=255)
                                                                                                                                    gggtcaCCCGCGAATACGGTGGTGCCGGCACCGGTGACCGGCGGGTGGCGATTGGCCCGC‑CGGCTTGGCCCATTAGCGGGTTCCCCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCtt                      <  2:743660/146‑1 (MQ=255)
                                                                                                                                    ggTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTa                                                                                         <  1:4993092/84‑1 (MQ=255)
                                                                                                                                     gTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGTCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTg                     >  1:4008272/1‑151 (MQ=255)
                                                                                                                                     gTTTACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTg                     >  1:193435/1‑151 (MQ=255)
                                                                                                                                       ttACCCGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGc‑c                                                                                                                <  1:1453894/58‑1 (MQ=9)
                                                                                                                                          cccGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAAt                >  1:1174028/1‑151 (MQ=255)
                                                                                                                                           ccGCGAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATg               >  2:3286243/1‑151 (MQ=255)
                                                                                                                                             gcgAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATggg             >  2:1621169/1‑151 (MQ=255)
                                                                                                                                             gcgAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATggg             <  2:109857/151‑1 (MQ=255)
                                                                                                                                              cgAATACGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGt            >  2:3158209/1‑151 (MQ=255)
                                                                                                                                               gAATACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTa           >  2:2245873/1‑151 (MQ=255)
                                                                                                                                                aagaCGGTGGCGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTAc          <  1:4927302/148‑1 (MQ=255)
                                                                                                                                                aaTACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCg                                                                         >  2:448881/1‑88 (MQ=255)
                                                                                                                                                aaTACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCg                                                                         <  1:448881/88‑1 (MQ=255)
                                                                                                                                                aaTACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTAc          <  1:2596629/151‑1 (MQ=255)
                                                                                                                                                aaTACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTAc          >  1:5142072/1‑151 (MQ=255)
                                                                                                                                                aaTACGGTGGTGCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTAc          <  1:670586/151‑1 (MQ=255)
                                                                                                                                                      gtggtgCCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTACCCAAcc    <  2:2411581/151‑1 (MQ=255)
                                                                                                                                                        ggtggCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGt                                                        >  2:4392979/1‑97 (MQ=255)
                                                                                                                                                            |                                                                                                                                                   
TGTAGGACTTGACCTGATAATCAGGTAGGAAAGTTCGTCGCGAACAGTAGGATAAATTTCGTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC‑‑CTACGACGGCCTGTGC‑‑A‑‑TGTGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGC‑CGGCTTGGCCCATTAGCGGGTTTACCCGCGAAGAGGCCCGACCGGGCGACCGCTAGTTCAGATCACAGCCTGAACCGCCCAACCAACCCTTGCAAATGGGTACCCAACCGC  >  CP009974/2564189‑2564485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑