| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,148,563 | 0 | G | A | 70.0% | 237.8 / 147.9 | 194 | intergenic (+90/+122) | RPPX_14035/RPPX_14040 | membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
| Reads supporting (aligned to +/- strand): ref base G (39/19); new base A (54/81); total (94/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.64e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 201 total aligned reads displayed.
CTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCACCA > CP009974/3148417‑3148713 | gtgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGc > 1:2192446/1‑151 (MQ=255) gtTTCGCAAGCCCCGGGCGAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcac < 2:4688026/151‑1 (MQ=255) gtTGCGCAGGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcac < 2:1542338/151‑1 (MQ=255) ttCGCAAGCGGCGGGCGCGGGTGGTGGGGGGAGATGTGGTCGCGAGCTGTTGCTGTGTGCCTGGGCCGGCCCTTTCGCGGGTAATCCCGCACCTAGAGGGCAGGGCACACACTTTGTACGAGCGGGTTTACCAGAGAAGAGGCCAGCACAg < 2:2142744/151‑1 (MQ=255) ttCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAg < 1:5101551/151‑1 (MQ=255) gCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAACCCCGCTCCTACAGGGCAGTGCACGCCCTTTGTAGGAGCGGGTTTACACGCGAAGAGGCGCGCACAGCCa > 2:4023861/1‑151 (MQ=38) gCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTACCCGCGCAGAGGCCAGCACAAGCa > 1:4852513/1‑151 (MQ=255) caggCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAc < 2:925669/148‑1 (MQ=255) aaGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACt > 1:1107583/1‑151 (MQ=255) gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTcc < 1:2100706/151‑1 (MQ=255) gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTcc < 2:1019055/151‑1 (MQ=255) ccAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTa < 1:832756/151‑1 (MQ=255) ccAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAAGAGCGGGTCTACCCGCGAAGAGGCCAGCACAGGCACTCCAACTCGTa > 1:1907661/1‑151 (MQ=255) cAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAg > 1:976203/1‑151 (MQ=255) aGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCCCACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAgg > 2:2283648/1‑151 (MQ=255) aGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAgg > 1:4804383/1‑151 (MQ=255) ggCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCgg > 2:203353/1‑151 (MQ=255) ggCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCgg < 2:1292011/151‑1 (MQ=255) cTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCgggt < 2:1107583/151‑3 (MQ=255) gggTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTAc > 1:3668103/1‑151 (MQ=255) ggTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTAcc < 1:2121455/151‑1 (MQ=255) tgtgGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGa > 2:1955053/1‑151 (MQ=255) ggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAgg > 1:5134963/1‑151 (MQ=255) gTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAggg < 1:390822/151‑1 (MQ=255) gCCAAATGGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCGGGCAGTGCACACCCTTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGcc < 2:4624053/151‑1 (MQ=25) gCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGcc > 1:10452/1‑151 (MQ=255) ccAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCCAATTGTAGGAGCGGGTTTACCCGCCAAGGGGccg > 2:1773175/1‑150 (MQ=255) aaaTACGGATGCTGGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGc < 2:2059244/151‑1 (MQ=21) tAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCCTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGCGCGGGGTTACCCGCGAAGCGGCCGGcaca > 2:477690/1‑151 (MQ=25) aGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAg < 1:2575834/151‑1 (MQ=255) gTGATGCTTGCCTGGGCCGGCCCTTGCGCGGGTAAACCGGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAgg < 2:1042545/151‑1 (MQ=21) ggATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGc < 2:2494663/150‑1 (MQ=255) gaggCTGGCCGGGGGCGGCCCGTGCGCGGGTGACGCCGCTCCGACAGGGGAGTGCACGCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCa < 2:4084548/148‑1 (MQ=17) ttGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCa < 1:679474/151‑1 (MQ=255) gCCTGGGCCGGCCCTTTCGGGGGTCAACCCGCTCCTACAGGGCAGTGCCCACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCaaa < 2:567761/151‑1 (MQ=21) gCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCaaa > 1:1611788/1‑151 (MQ=255) cTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAAtt < 1:2061007/151‑1 (MQ=255) ggccggccGTTTCGCGGGTAACCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTa < 1:4023175/151‑1 (MQ=21) gccggccCTTTCGCGGGTAAACCGGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAg < 1:5235972/151‑1 (MQ=255) gccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCCGTGCACACCCTTTGGAGGAGCGGGCTTACCCGCGCAGAGGCCAGCACCGGCACTCCAAACCGCAGGAGCGGGTTTACCCGCGACGGGGCCGGCACAGTGACTCCGCATTGTAg > 2:5122036/1‑151 (MQ=21) ccggccCTTTCGGGGGTAATCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAgg < 1:3048170/151‑1 (MQ=21) cccTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCg < 2:1920582/151‑1 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTACGAGCGGGTCTACCCGCGAAGGGGCCGGCACAGGCACGCCGAACTCTAGGacccg > 2:4911173/1‑147 (MQ=21) ccTTGCGCGGGTAAACCCGCTCCTACAGGGCAGGGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCgg < 1:5084111/151‑1 (MQ=21) tttCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCggtt < 2:2587859/151‑3 (MQ=255) ttCGCGGGTAAACCCGCTCGTACAGGGCAGTGCACGCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGttt < 1:2592883/151‑1 (MQ=21) gggTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTCTTAccc > 2:2346140/1‑151 (MQ=21) aaaCCCGCTCCTACAGGGCAGTGCACACCCTTTGTTGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGa > 1:95063/1‑151 (MQ=21) aCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAg > 1:4250792/1‑151 (MQ=255) ccGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAggg < 2:2192446/151‑1 (MQ=255) tCCTACCGGGCAGTGCACACCCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCACATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGccg < 2:1382164/151‑2 (MQ=21) tCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGccg > 2:2897551/1‑150 (MQ=255) aCAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGcac > 1:1677748/1‑151 (MQ=255) aCAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGATTTACCCGCGAAGGGGCCGGcac > 2:2950496/1‑151 (MQ=21) cAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGcaca < 1:838665/151‑1 (MQ=21) aGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAg > 1:3819620/1‑151 (MQ=21) gggCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAgg > 1:1120100/1‑151 (MQ=21) ggCTGTGCCCACCCTTTGGAGGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGc < 1:3150519/151‑1 (MQ=18) aGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCact > 1:4660703/1‑149 (MQ=21) acacCTTTTGTAGGAGCGGGTTTACCCGCGGAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCaaa < 2:679774/151‑1 (MQ=17) tccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCaaaa > 1:3326294/7‑151 (MQ=255) cacgcgttGTGGGGGCGGGTTTAGACGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCaaat < 2:3620240/145‑2 (MQ=14) ccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAAc > 1:4331169/6‑151 (MQ=255) ccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAAc > 1:4916213/6‑151 (MQ=255) ccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAAc > 1:2155114/6‑151 (MQ=255) caaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACg > 2:4202902/5‑151 (MQ=255) aaattGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattgt < 1:2015118/148‑5 (MQ=18) cTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGAAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAACTGTAGGAGCCGTTGTACCCGCGAAGTGGCCCGCACAGGCACCCCaaacttca > 2:25311/1‑146 (MQ=17) ttGTAGGAGCGGGCTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTCTTACCCGCGAAGGGGCCAGCACAGGCCCTCCaaactgtagg > 2:2439016/1‑144 (MQ=18) gTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGc > 1:1520121/1‑151 (MQ=255) gTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATCGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGc > 1:1477330/1‑151 (MQ=255) ggAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAACACGGTCAGCCCt > 1:3236994/1‑151 (MQ=255) gAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTCACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCtt > 2:3463649/1‑151 (MQ=255) gCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTccc > 2:1308812/1‑151 (MQ=255) gCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTcc > 1:4582955/1‑151 (MQ=255) ggttttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCcac < 1:3398761/148‑1 (MQ=255) gttttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGCTTACCCGCGAAGGGGCCAGCACAGGCATCCCAACACGGTCAGCCCTTCcacc > 2:4143275/3‑150 (MQ=21) ttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCt < 1:654321/151‑1 (MQ=255) ttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCt < 1:1358387/151‑1 (MQ=255) aCCCGCGAAGGGGCCTGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGc < 1:4645736/151‑1 (MQ=255) aCCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGc < 1:2767658/151‑1 (MQ=255) cccGCGAAGGGGCCGGGACAGGCCCTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCg < 1:3279205/151‑1 (MQ=255) ccGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACCGGCATTCCAAAACGGTCAGCCCTCCCACACCTGCgg > 2:434848/1‑151 (MQ=255) ccGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCgg < 2:1677748/151‑1 (MQ=255) cgcgAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCggg > 2:3850030/1‑151 (MQ=255) gcgAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGt > 1:266488/1‑151 (MQ=255) gcgAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGt > 1:2677216/1‑151 (MQ=255) cgAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGtt < 2:3246227/151‑1 (MQ=255) cgAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGtt > 1:2959106/1‑151 (MQ=255) gAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTc > 2:3931756/1‑151 (MQ=255) gAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTc > 1:3133433/1‑151 (MQ=255) gAAGAGGCCCGCACAGGCACCCCAAAGTGTAGGAGCGGTTTCACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTc < 1:2397479/151‑1 (MQ=255) aaGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCa > 2:2426422/1‑151 (MQ=255) aaGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATCGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGCCAGCCCGTCCACAGCTGCGGGtccc > 2:866588/1‑148 (MQ=21) aGGGGCCGGCGCAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAc < 2:4699074/151‑1 (MQ=255) aGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAc > 1:4117755/1‑151 (MQ=255) ggggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAcc < 1:3585141/151‑1 (MQ=255) ggggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAcc > 1:4694539/1‑151 (MQ=255) ggggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAcc > 2:2404809/1‑151 (MQ=255) gggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTACGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCCGCGGGTTCACCa > 2:3785009/1‑151 (MQ=255) | CTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCACCA > CP009974/3148417‑3148713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |