Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 1,984,399 T→C intergenic (+229/+55) RPPX_08865 → / ← RPPX_08870 hypothetical protein/SulP family inorganic anion transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,984,3990TC99.5% 647.1 / NA 195intergenic (+229/+55)RPPX_08865/RPPX_08870hypothetical protein/SulP family inorganic anion transporter
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (108/85);  total (109/86)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 198 total aligned reads displayed.

CTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCA  >  CP009974/1984251‑1984544
                                                                                                                                                    |                                                                                                                                                 
ctgctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCGGCTGGCCAAtctc                                                                                                                                                 >  2:130813/1‑151 (MQ=255)
  gctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACCCGCATCGGTGGTTCGCCACAGCCCGTCGTAGGTGCGGGTTTACCCGCGACCGGGCCGGCCCTGCTGGCCAATCTccc                                                                                                                                               >  1:335461/1‑150 (MQ=14)
   ctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAc                                                                                                                                              >  1:978287/1‑151 (MQ=255)
     ggCCCATCTCCGCCGGGCGATCAGCGTGGCCGCCGCGGCCGGCTTCGCGGGTAAACCCGTCCCGACGCACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAccc                                                                                                                                            <  2:3014196/151‑1 (MQ=14)
     ggCCAATCTCCCCCCGCCGTTCACCGTGGCCGCCGCTACCGTAGTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAccc                                                                                                                                            <  2:1990341/151‑1 (MQ=255)
      gCCCATCTCCGCCCGCCGTCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACccg                                                                                                                                           <  2:3833026/151‑1 (MQ=255)
       ccAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACccgc                                                                                                                                          <  1:4641632/151‑1 (MQ=255)
          aTCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGt                                                                                                                                       >  1:372771/1‑151 (MQ=255)
             cccACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCa                                                                                                                                    <  1:1147716/150‑1 (MQ=255)
              ccACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCAc                                                                                                                                   <  1:1549656/151‑1 (MQ=255)
              ccACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCAc                                                                                                                                   >  2:330599/1‑151 (MQ=255)
              ccACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCCTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCAc                                                                                                                                   >  2:1522752/1‑151 (MQ=255)
                  ccgccgTTCACCGTTGCCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGtt                                                                                                                               <  1:4124495/151‑1 (MQ=255)
                    gccgTTCACCGTTGCGCCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgc                                                                                                                             <  1:2636360/151‑1 (MQ=255)
                    gccgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgc                                                                                                                             >  2:88931/1‑151 (MQ=255)
                      cgTTCCCCGTTGCCGCCGATACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgccg                                                                                                                           <  1:748828/151‑1 (MQ=255)
                      cgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCTGGCCAATCTCCACCCGCAGTTCACCGTTcccc                                                                                                                           >  2:4473626/1‑150 (MQ=255)
                       gTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCCATCTCCCCCCGCCGTTCACCGTTgccgc                                                                                                                          >  2:5115295/1‑151 (MQ=255)
                       gTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgccgc                                                                                                                          >  2:2302750/1‑151 (MQ=255)
                       gTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCAGCTGGCCAATCTCCACCCGCCGTTCACCGTTgccgc                                                                                                                          >  2:3269751/1‑151 (MQ=255)
                        ttCACCGTTGCCGCCGCTGCCGTATCCGCGGGTAAACCCGCCCCTCCGCACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgccgcc                                                                                                                         <  2:681315/151‑1 (MQ=14)
                         tCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCACTCTCCACCCGCCGTTCACCGTTgccgccc                                                                                                                        >  2:5081448/1‑150 (MQ=255)
                         tCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCa                                                                                                                        <  1:836121/151‑1 (MQ=255)
                           aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACt                                                                                                                      <  1:3740857/151‑1 (MQ=255)
                              gTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGCAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCCCCCCCAcc                                                                                                                   >  2:4262613/1‑151 (MQ=255)
                              gTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTAcc                                                                                                                   >  1:304395/1‑151 (MQ=255)
                                tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGt                                                                                                                 >  1:56476/1‑151 (MQ=255)
                                tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGt                                                                                                                 <  1:330599/151‑1 (MQ=255)
                                    gccgcTACCGTCTTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTc                                                                                                             <  1:1123555/151‑1 (MQ=255)
                                    gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTc                                                                                                             >  2:1087576/1‑151 (MQ=255)
                                    ccctcTACCATATTCACTGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTc                                                                                                             <  1:4313480/147‑1 (MQ=17)
                                        cTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCTAATTTCCTCCCGCCGTTCACCGTTGCTGCCACTACTGTATTCGCgg                                                                                                         >  1:1004076/1‑151 (MQ=255)
                                         tACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTCTTCGCggg                                                                                                        >  1:125874/1‑151 (MQ=255)
                                         tACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTACTCCCggg                                                                                                        >  2:832511/1‑151 (MQ=255)
                                          aCCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGATTACCCGCGAAAGGGCCGGCCCTGCTCGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGt                                                                                                       >  2:3445558/1‑151 (MQ=255)
                                           ccGTATTGCCGGATAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCGCAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTa                                                                                                      <  2:1802379/151‑1 (MQ=17)
                                            cGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTaa                                                                                                     >  1:4926813/1‑151 (MQ=255)
                                            cGTATGCGCGGGTAAACCCGCCCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTaa                                                                                                     <  1:1658707/151‑1 (MQ=255)
                                              tATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAAc                                                                                                   <  1:3487399/151‑1 (MQ=255)
                                                ttCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTCTGCGCGGGTAAAccc                                                                                                 >  2:2869248/1‑151 (MQ=255)
                                                ttCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAAccc                                                                                                 >  1:3100819/1‑151 (MQ=255)
                                                    cgGGTAAACCCGCCCCTACACAGGTGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTc                                                                                             <  1:2191096/151‑1 (MQ=17)
                                                     gggTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTACACCCACTcc                                                                                            >  1:132060/1‑151 (MQ=255)
                                                     gggTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTcc                                                                                            >  1:1968841/1‑151 (MQ=255)
                                                     gggTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGCATTCGCGGGCAAACCCACTcc                                                                                            >  2:3659265/1‑151 (MQ=255)
                                                      ggTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCCCGGGTAAAccccgccct                                                                                           >  1:504492/1‑145 (MQ=255)
                                                        tAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTAc                                                                                         >  1:4110320/1‑151 (MQ=255)
                                                          aaCCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGc                                                                                       >  1:3669805/1‑151 (MQ=255)
                                                               gCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCaa                                                                                  >  1:1106373/1‑151 (MQ=255)
                                                                     acacacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAAcccccc                                                                            >  2:1685067/1‑150 (MQ=255)
                                                                      cacacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGc                                                                           >  1:2998626/1‑151 (MQ=255)
                                                                       acacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCt                                                                          >  1:1192825/1‑151 (MQ=255)
                                                                        cacacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTg                                                                         >  2:2664361/1‑151 (MQ=255)
                                                                         acacGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGt                                                                        >  2:5219424/1‑151 (MQ=255)
                                                                           acGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGGCAACCCACTCCTACGCCCCAACCCCCGCCGtcg                                                                      >  1:4955810/1‑149 (MQ=255)
                                                                            tgCATCGGTGGTGCGGCGCAGGCGGTCGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGt                                                                     <  2:4206666/150‑1 (MQ=14)
                                                                             gCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTcc                                                                                            <  2:4663131/127‑1 (MQ=255)
                                                                             gCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGACGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTc                                                                    >  2:4903826/1‑151 (MQ=255)
                                                                              cATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTACTcc                                                                   >  2:2893073/1‑151 (MQ=255)
                                                                                 cGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCTCGGGTAAACCCCCTCCTACCCCCCAACCCCCGCTGTAGTCCGCa                                                                >  1:2517894/1‑151 (MQ=255)
                                                                                 cGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCa                                                                >  1:4623638/1‑151 (MQ=255)
                                                                                  ggtggtTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCCGTAGTCCGCaa                                                               >  2:967046/1‑151 (MQ=255)
                                                                                      gtTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGc                                                           >  1:4234120/1‑151 (MQ=255)
                                                                                         cGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGcccc                                                        <  1:4219618/151‑1 (MQ=255)
                                                                                          gccgcggCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCt                                                       <  2:2002242/145‑1 (MQ=255)
                                                                                          gCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCAGTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGccccc                                                       >  2:4013064/1‑150 (MQ=255)
                                                                                           ccACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTc                                                      >  1:3453019/1‑151 (MQ=255)
                                                                                             acaGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGACCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTCCCGCCACTACCGTATTCGCGGGCAAACCCACTCCCACGCTCCAACCCCCGCTGTACTCCGCTACCGCCCCTCgc                                                    >  1:101983/1‑150 (MQ=18)
                                                                                              caGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGAt                                                   <  2:56476/151‑1 (MQ=255)
                                                                                               aGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATc                                                  >  2:1707639/1‑151 (MQ=255)
                                                                                                gCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATcc                                                 <  1:5099958/151‑1 (MQ=255)
                                                                                                 cccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGCCCGCAACCGCCCCTCGATCCg                                                >  2:3553988/1‑151 (MQ=255)
                                                                                                  ccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCCGTAGTCCGGAACCGCCCCTCGATccta                                               >  2:1751094/1‑149 (MQ=255)
                                                                                                   ggtcgtAGGAGCGGGTTAACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGAc                                              <  2:1042400/150‑1 (MQ=255)
                                                                                                    gtcgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACg                                             <  1:2013744/151‑1 (MQ=255)
                                                                                                     tcgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGc                                            >  1:4449496/1‑151 (MQ=255)
                                                                                                      cgtGGGAGCGGGTTAACCCGCGAGGGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATGCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCt                                           <  2:2723937/151‑1 (MQ=21)
                                                                                                       gtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCCACCGCCCCTCGATCCGACGCtt                                          >  2:942746/1‑151 (MQ=255)
                                                                                                       gtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCtt                                          <  1:47899/151‑1 (MQ=255)
                                                                                                         aGGGGCGGGTTTGCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCa                                        <  1:1060039/151‑1 (MQ=255)
                                                                                                         aGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCCATCCGACGCTTcc                                        >  2:202438/1‑150 (MQ=255)
                                                                                                          ggAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAg                                       <  1:823404/151‑1 (MQ=255)
                                                                                                           gAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAgg                                      <  2:5233228/151‑1 (MQ=255)
                                                                                                                ggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgccg                                 >  1:2234316/1‑151 (MQ=255)
                                                                                                                ggTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgccg                                 <  2:4739362/151‑1 (MQ=255)
                                                                                                                 gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGcgccgc                                <  1:3269751/151‑1 (MQ=255)
                                                                                                                  ttgccccGCGAAGGGGCCGGCCCTGCTGGCCACTCTCCACCCGCCGTTCACCGGTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgct                               <  2:1188276/147‑1 (MQ=25)
                                                                                                                   ttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCGGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgctg                              >  2:4700716/1‑151 (MQ=255)
                                                                                                                    tACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCgctgc                             <  1:658468/151‑1 (MQ=255)
                                                                                                                       ccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGctct                          <  1:2969834/151‑1 (MQ=255)
                                                                                                                           gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCa                      <  2:1962356/151‑1 (MQ=255)
                                                                                                                             aaGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGc                    >  1:276788/1‑151 (MQ=255)
                                                                                                                               gggCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCaa                  <  1:644815/151‑1 (MQ=255)
                                                                                                                                ggcgggccCTGCTGGCCAGTCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCACACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAAc                 <  2:2387561/151‑1 (MQ=255)
                                                                                                                                ggcgcgccCTGCGGCCCAAAAGCCGCCCGCCGTGCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCGCTCCTACGCCCCAACCCCCGCTGTAGTCCGCAGCCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAAc                 <  2:1913636/146‑1 (MQ=25)
                                                                                                                                ggccggccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAAc                 <  1:3969059/151‑1 (MQ=255)
                                                                                                                                  ccggccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCCGCTCTATCAGCAAccc               >  2:4247590/1‑150 (MQ=255)
                                                                                                                                           ctgGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCAtt      <  2:418866/151‑1 (MQ=255)
                                                                                                                                               ccAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCa  <  1:2302750/151‑1 (MQ=255)
                                                                                                                                               ccAATCTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCa  >  1:4760512/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
CTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACACGCATCGGTGGTTCGCCACAGCCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCACTACCGTATTCGCGGGTAAACCCACTCCTACGCCCCAACCCCCGCTGTAGTCCGCAACCGCCCCTCGATCCGACGCTTCAGGCGCCGCTGCTCTATCAGCAACCGTGACCCATTGGCA  >  CP009974/1984251‑1984544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: