| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,910,258 | A→G | intergenic (+162/‑497) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,910,258 | 0 | A | G | 87.8% | 902.8 / 96.2 | 416 | intergenic (+162/‑497) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (36/14); new base G (139/219); total (182/234) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 420 total aligned reads displayed.
TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405 | tCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCg > 1:4835188/1‑151 (MQ=255) gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc < 1:1274532/151‑1 (MQ=255) gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc < 2:1188407/151‑1 (MQ=255) gggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc > 1:4153682/1‑151 (MQ=25) gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTTACCGCCGCACCCGCCACCGCCTCCATCAATCGGCACCGTCGCCAcat > 1:426502/1‑149 (MQ=25) cAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgtc > 1:4806/1‑149 (MQ=25) cccGCTACTGCATCAGCCGGTGGTGTCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCAGTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAccgt < 2:1076462/151‑3 (MQ=18) gCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGt < 2:146081/151‑1 (MQ=21) cTACATCAACCGGCGCTGTCGCCACGCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGa < 2:4153682/151‑1 (MQ=17) aCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:796585/124‑1 (MQ=255) ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAg > 1:1667585/1‑141 (MQ=21) gtggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:3864194/120‑1 (MQ=255) gCCCCACACCGTCGTCGGAGCAGGTTCACCCGTGAATCGGCCGGACCTGCCGCCCAATGCCTCCAGTCCTTCCCCGCCGCACCCGCCTCCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTGGTGGGAGCGGGTTCACCCGCGAATAg < 2:2716977/151‑1 (MQ=255) ccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTAGCTGCGGGTGCACCCGCGAATAgg > 1:4437614/6‑151 (MQ=17) cccACACCGTCGTAGGAGCGGGTTCACCTCGGAAGAGCACACACCTGCCCCCCAATACCTCCAGACGTTCACGTCCGCACCCGCCACCGTGAACAACAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGc > 1:2850777/1‑151 (MQ=16) ccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:3766412/151‑1 (MQ=21) ccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:2011283/151‑1 (MQ=21) cgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCCCCGTCGCC‑CGCCCCACCTGTAGGAGCTGGACCACCCGCGAAGAGACCg > 2:2665874/3‑151 (MQ=14) acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:4718103/151‑1 (MQ=21) cacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa > 1:3910314/1‑151 (MQ=255) ccGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:966627/151‑1 (MQ=255) cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 2:654829/151‑1 (MQ=21) cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:1805305/151‑1 (MQ=255) gtcgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1969065/148‑1 (MQ=255) ggggTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1369823/148‑1 (MQ=25) ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:241936/151‑1 (MQ=255) ccggaGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCCGCCCAATACGGCCAGTCATTCACCTCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 2:5020495/147‑1 (MQ=21) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCa > 2:4311768/1‑98 (MQ=255) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc > 1:2961669/1‑151 (MQ=255) ggTAGGAGCGGGTGCACCCGCGAATAGGCCGGAGCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 2:1645882/150‑1 (MQ=25) gTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccg < 2:776143/151‑1 (MQ=21) gAGCGGGTTCACCCGCGAATAGGCCGGACCTTCGGCCGAGCACCGTCAGTGGTTAGCTGGCAGACCTGCGACGGCGTTCTTTCATTGGCAACGACGCACCGCTCC‑CTTGTAGGAGTGGCTTCACCTGCGATTAGGCCGGAAACGCCGCCCa > 2:465396/1‑151 (MQ=255) aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCACCCAATACCCCCAGGCATTCACCGCCGCACGCGCCACCGCCTTCATCAACCGGCACCCTCGCAACGCACC‑CTTGTAGGAGCGGGGTCACCCGCGAATAGGCCGGCCCAGCCGCCCaa > 2:3407874/1‑151 (MQ=21) gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGc < 1:2239542/100‑1 (MQ=255) gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGc > 2:2239542/1‑100 (MQ=255) gggTGCAGCCGCTGATAGCGCGGGCGTGCCGCCCAATGCGGCCCGTGATTCGCCGGGGGGCCCGCCACCGCGTTCATCAATCTGCGCGGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc < 2:2483225/151‑1 (MQ=12) ggTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTACGCCCCCGCGCACCCGCGAATCGGCCGGACCTGCCGCCCAATAcc > 2:3564988/1‑151 (MQ=18) cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa < 1:1164610/151‑1 (MQ=255) cccGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGt < 1:1494214/151‑1 (MQ=25) cgcgAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCAccc < 1:456126/113‑1 (MQ=21) cgcgAATAGGCCGGACCCGCGGCCCAAGACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTGGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCa < 2:4900896/151‑1 (MQ=25) gcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGCATAGGCCGGACCCGCCGCCCAATACCCCCAGCCAt > 2:278526/1‑151 (MQ=37) cgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTCGGAGCGGGCTCACCCGCGAATACGCCGGACCTCCCGCCCACTACCCCCAGTCact > 2:4506664/1‑149 (MQ=25) gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAgg > 1:1735414/1‑97 (MQ=18) gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTc > 1:3829775/1‑151 (MQ=255) aagaGGGCGGTCCTGCCGCCCAGTGCCGCCAGTCATTCACTGCCGCCCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 2:4862841/148‑1 (MQ=21) aaTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCGTCAATCGGCCCCGTCGCCCCGCCCC‑CTGTTACGAGCGCGCGCACCCGCGAATAGGCCGGCCCTCCCGCCCAATCCCCCCAGCCATCCa > 2:2939288/1‑151 (MQ=18) aaTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTCGAGGAGCGGCGTCACCCGCGAATAGGCCGGAACGCCCGCCCAAGACCCCCAGCCacgaa > 1:3621312/1‑147 (MQ=21) tAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 1:3995065/151‑1 (MQ=25) tAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 1:2541240/151‑1 (MQ=25) tAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGCAGGAGCCGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCAcc > 1:4652647/1‑151 (MQ=37) aaGGCCGCACCCGCCGCCCGATACCGCCGGTCACCCCCCGCCGGACCCGCCACCGCATTCATCAATCGGCGCCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 2:3682087/150‑1 (MQ=18) aGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg < 1:5109011/151‑1 (MQ=255) ccGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgccg < 2:5206989/151‑1 (MQ=25) ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTAGTAGGAGCGGGTTCACCCGCGAATGAGCCGGGCCCGCGGCGCACGCCCCCCCGTCATACAccaccc > 2:955901/1‑147 (MQ=25) cGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAACCGGCACCGTCGCCCCGCCCT‑CTTGTAGAAGCGCGCTCACCCGCGAATAGGCCGGACCTGCCGCGCAATAGCCCGAGTCATCCACAGTCGc > 2:895657/1‑151 (MQ=21) ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATCGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGcc > 2:4328606/1‑150 (MQ=255) ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc > 1:897203/1‑121 (MQ=255) ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAACCAGCACGCTCGCCCCGCCCC‑CTTGTAGGAACGGGTTCACCCGCGAAGAGGCCGGCCCAGCCGCCCAAAACCCCCAGCCAGCCACCGACGcc > 1:4086486/1‑150 (MQ=21) gACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:5189678/119‑1 (MQ=255) aCCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:101257/116‑1 (MQ=255) cTGCCGCCCACTGCCCCAAGTCATTCCCCGCCGCACCCGCCACCACATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAcctg < 2:2284820/151‑3 (MQ=18) tGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGc < 1:2914928/151‑1 (MQ=21) tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCACTCGGCACCATCGCCCCGCACC‑CTTGTACGCGCCGGCTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGCCACCCACCGCCGCACgcgc > 2:2607847/1‑151 (MQ=25) tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1014754/114‑1 (MQ=37) tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAGTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGc < 1:1904145/151‑1 (MQ=21) ccgccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCAGCACCGCGGCCACGGACC‑GTGGGAAGAGCGCGGTCACCGCCGAATCGGCAGGAACAGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCa > 2:4552466/1‑151 (MQ=16) cgccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑Ct > 1:3192272/1‑74 (MQ=255) cgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 1:4899818/120‑1 (MQ=25) cgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTGGTAGGAGGGGGTTCACCCGCGAATAGGCCGGACCGGCCGGCCAAGACCCCGAGTCATCTCCCGTCGCAGCTGccgc > 1:110654/1‑149 (MQ=25) cccAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 1:534452/1‑114 (MQ=21) cccAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc < 2:534452/114‑1 (MQ=21) cgaTACCCCCAGTCATCCACCGCCGCACCCGCCACCGCATTCATCCGTCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCa < 2:2105780/149‑1 (MQ=18) aaTACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAt > 1:2361723/1‑151 (MQ=255) aaTACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCCTCGCACCCGCCACCGCAt > 2:2861124/1‑151 (MQ=255) aCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCa < 2:3219155/123‑1 (MQ=255) ccccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGCAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCTGCACCCGCCACCGCATTcccc > 2:2188672/1‑148 (MQ=255) cccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatca > 2:191890/1‑147 (MQ=255) cAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAgg > 1:160236/1‑89 (MQ=255) ggtgatccACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCa < 1:1357091/144‑1 (MQ=21) aGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATCcgccgacc > 1:2109512/1‑146 (MQ=255) aGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAtt > 1:4487841/1‑119 (MQ=25) ggcATTCACCGCCGCACCCGCCACCGCACTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCaa < 1:4323878/149‑1 (MQ=255) tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCg < 2:2429206/125‑1 (MQ=255) tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg > 1:2711407/1‑151 (MQ=255) gcggtCACCGGCGGGCCCGCCAGCGCATTCATCAGTCGGCGCCGTCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg < 2:1605238/147‑1 (MQ=18) cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACGGGCAAGc > 1:3269843/1‑151 (MQ=21) tCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg > 2:4222716/1‑91 (MQ=21) tCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:4222716/91‑1 (MQ=25) cgccgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCAGCACCTGCCACCGCATTcatcaat > 2:706015/1‑134 (MQ=14) gccgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa < 2:3876326/93‑1 (MQ=25) cACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 2:3915219/106‑1 (MQ=21) cACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACAt > 1:1206506/1‑151 (MQ=255) cATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCa > 2:2366755/1‑151 (MQ=255) ttCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATc < 1:2521492/151‑1 (MQ=255) tcaATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcac > 1:5153796/1‑111 (MQ=14) aTCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGt > 2:3781335/1‑151 (MQ=255) cGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTc > 2:1723716/1‑78 (MQ=11) ggCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 1:705139/82‑1 (MQ=255) aCCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc > 2:3119293/1‑80 (MQ=11) | TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |