BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	3,297,192	T→G	T53P (ACC→CCC)	RPPX_14685 ←	AraC family transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	3,297,192	0	T	G	100.0%	849.9 / NA	236	T53P (ACC→CCC)	RPPX_14685	AraC family transcriptional regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (114/122); total (114/122)

Only 100 of 256 total aligned reads displayed.

CGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGT‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGC  >  CP009974/3297045‑3297339

 ggggCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCCTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑gggg                                                                                                                                                 >  2:1945869/1‑150 (MQ=255)

  gggCTGGCATCCAGCCTCACGGCACTGAGTAGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggt                                                                                                                                                <  2:1055745/151‑3 (MQ=255)

   ggCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggta                                                                                                                                               <  1:1417820/151‑4 (MQ=255)

    gCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtac                                                                                                                                              >  1:2896967/1‑147 (MQ=255)

    gCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtac                                                                                                                                              <  1:2120994/151‑5 (MQ=255)

    gCTGGCAGCCCGGCTCGCCGCACGGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTGTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtac                                                                                                                                              <  2:4499147/151‑5 (MQ=255)

     cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACa                                                                                                                                              >  1:2999176/1‑151 (MQ=255)

     cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtaca                                                                                                                                             <  1:2273280/151‑6 (MQ=255)

     cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtaca                                                                                                                                             <  2:3807912/151‑6 (MQ=255)

     cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtaca                                                                                                                                             <  1:3875107/151‑6 (MQ=255)

     cTGGCATCCAGCCTCACGGCACTGAGTGGAAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑gggg‑ggggtaca                                                                                                                                             <  1:2956232/151‑6 (MQ=255)

      tGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAg                                                                                                                                             >  2:4788433/1‑151 (MQ=255)

           tCCAGCCTCACGGCACGGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGc                                                                                                                                        <  2:1674262/151‑1 (MQ=255)

                ccTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACAtt                                                                                                                                   >  2:1560288/1‑151 (MQ=255)

                 cTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACAttt                                                                                                                                  <  2:1745629/151‑1 (MQ=255)

                  tCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACAtttt                                                                                                                                 >  1:2206784/1‑151 (MQ=255)

                     cGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGGGGGGTACAGAACGCACATTTTCgg                                                                                                                              >  1:642535/1‑151 (MQ=255)

                        cACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGgtgt                                                                                                                           >  2:782292/1‑151 (MQ=255)

                        cACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGgtgt                                                                                                                           <  1:4644790/151‑1 (MQ=255)

                        cACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGgtgt                                                                                                                           >  1:3426944/1‑151 (MQ=255)

                         aCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTa                                                                                                                          >  1:355803/1‑151 (MQ=255)

                          cTGAGTGGCAAGTTCACCGAATCGACCATGTAATGCAGCGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGTTTTTGCTGCCTTGGTCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACAGTTTCGGTGTaa                                                                                                                         >  2:98325/1‑151 (MQ=255)

                          cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTaa                                                                                                                         <  1:859880/151‑1 (MQ=255)

                          cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTaa                                                                                                                         <  1:4917804/151‑1 (MQ=255)

                          cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTaa                                                                                                                         >  1:316388/1‑151 (MQ=255)

                          cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGATGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTaa                                                                                                                         <  1:174149/151‑1 (MQ=255)

                           tGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAAc                                                                                                                        <  2:3893984/151‑1 (MQ=255)

                           tGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAAc                                                                                                                        <  2:149943/151‑1 (MQ=255)

                           tGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAAc                                                                                                                        <  1:1370205/151‑1 (MQ=255)

                              ggggCAGGGCCGCCGAACCGACCTGGTAATGCGGTGGGTCGGGGGGGTAGTGCTCGTCACCCAGGAGCGGGCTTTTGGTGCCTTGGGCAGGGATGCAGGGGGCAGGCGGC‑GCCGG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCa                                                                                                                     <  2:228466/149‑1 (MQ=255)

                                ggCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCAcc                                                                                                                   >  2:4561929/1‑151 (MQ=255)

                                ggCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCAcc                                                                                                                   <  1:4979946/151‑1 (MQ=255)

                                    aGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGt                                                                                                               >  2:3467818/1‑151 (MQ=255)

                                         aCCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGCTGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAgg                                                                                                          >  1:3615974/1‑151 (MQ=255)

                                           cggaaCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTc                                                                                                        <  2:1524056/148‑1 (MQ=255)

                                           cGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTc                                                                                                        <  1:3210971/151‑1 (MQ=255)

                                            gAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCa                                                                                                       >  1:4863600/1‑151 (MQ=255)

                                              aaCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATc                                                                                                     <  2:4136566/151‑1 (MQ=255)

                                              aaCGACCACGTAATGCAGGGGGTCGTAGGCGGACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATc                                                                                                     <  1:1001267/151‑1 (MQ=255)

                                                cGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCGTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGa                                                                                                   <  1:2347408/151‑1 (MQ=255)

                                                 gACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGAt                                                                                                  >  2:3108907/1‑151 (MQ=255)

                                                  aCCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATg                                                                                                 >  1:1779539/1‑151 (MQ=255)

                                                    cATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGc                                                                                               <  2:1016499/151‑1 (MQ=255)

                                                     ctGTAAAGCAGGGGGGCGTAGGCGTACTGCTCGGCACCCAGGGACCGGCCTTTGCTGCCTTGGGCAAGGATGCAAAGGGCAGGCTGCGGCCGG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGc                                                                                               <  1:3644769/150‑1 (MQ=255)

                                                     aTGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGcc                                                                                              >  2:2326650/1‑151 (MQ=255)

                                                         aaTGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATg                                                                                          <  1:1925874/151‑1 (MQ=255)

                                                         aaTGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATg                                                                                          >  2:3617266/1‑151 (MQ=255)

                                                          aTGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGc                                                                                         <  1:523152/151‑1 (MQ=255)

                                                             cAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg                                                                                      <  1:2986353/151‑1 (MQ=255)

                                                             cAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg                                                                                      <  2:156960/151‑1 (MQ=255)

                                                              aGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTggg                                                                                     >  2:1984390/1‑151 (MQ=255)

                                                                tGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGcc                                                                                   >  2:2487005/1‑151 (MQ=255)

                                                                   gTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCaaa                                                                                <  1:597905/151‑1 (MQ=255)

                                                                   gTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCaaa                                                                                <  2:2896967/151‑1 (MQ=255)

                                                                    tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAg                                                                               >  1:1609370/1‑151 (MQ=255)

                                                                      gTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAggg                                                                             <  1:115207/151‑1 (MQ=255)

                                                                      gTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGACAAAggg                                                                             >  1:24410/1‑151 (MQ=255)

                                                                        aGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAGGGGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGc                                                                            >  1:772518/1‑151 (MQ=255)

                                                                         ggCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGGGGGGCATAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTc                                                                          >  2:3089727/1‑151 (MQ=255)

                                                                          ggggacggCTGGTCACGCGGGAACGGGCTTTTGCTGCCTGGGGCAAGGGGGCACGGGGCGGGGTGG‑GCCGG‑GGGG‑GGGTACAGAACGCACATTGTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCg                                                                         <  1:3022542/144‑1 (MQ=255)

                                                                          gCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGGGTACCGCACCAGGGATAGGTCATCGATGGCCGATGCTGCGCCAACGGGCTcc                                                                         >  2:3263245/1‑150 (MQ=255)

                                                                           cGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGc                                                                        >  2:3395751/1‑151 (MQ=255)

                                                                            gTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGcc                                                                       >  1:2235758/1‑151 (MQ=255)

                                                                                tGCTCGTCACCCAGGAACAGGCCTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGCGTAACGCACCCGGTAGAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGcc                                                                   >  2:4658102/1‑150 (MQ=255)

                                                                                  cTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                                 >  1:3682249/1‑151 (MQ=255)

                                                                                  cTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                                 <  2:878083/151‑1 (MQ=255)

                                                                                  cTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg                                                                 <  2:2819624/151‑1 (MQ=255)

                                                                                    cGTCCCCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGc                                                               <  1:3380915/151‑1 (MQ=255)

                                                                                       cACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGAGGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACAGTTTCGGTGTAACGCACCAGGTACAGGTCATCGATCGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGt                                                            >  2:4104035/1‑151 (MQ=255)

                                                                                        aCCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGtt                                                           <  2:2532397/151‑1 (MQ=255)

                                                                                         cccAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTg                                                          >  2:1238400/1‑151 (MQ=255)

                                                                                          ccAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGa                                                         >  1:2636941/1‑151 (MQ=255)

                                                                                           cAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGAt                                                        >  1:1697950/1‑151 (MQ=255)

                                                                                             ggAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCa                                                      >  2:1877240/1‑151 (MQ=255)

                                                                                              gAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAg                                                     <  2:2988057/151‑1 (MQ=255)

                                                                                                aCAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCt                                                   <  2:2034116/151‑1 (MQ=255)

                                                                                                  aGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCg                                                 <  1:4163741/151‑1 (MQ=255)

                                                                                                  aGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCg                                                 <  2:1799096/151‑1 (MQ=255)

                                                                                                   ggCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCgg                                                <  2:614732/151‑1 (MQ=255)

                                                                                                    gCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATTAGCTCGGc                                               >  1:3714551/1‑151 (MQ=255)

                                                                                                     cTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGcc                                              <  2:22335/151‑1 (MQ=255)

                                                                                                         tgctgcCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCt                                          <  1:3444625/151‑1 (MQ=255)

                                                                                                           ctcgcTTGGGGAAGCAGGCCCAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACACAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTcc                                        <  2:4922108/147‑1 (MQ=255)

                                                                                                            tgcCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGGGGGGTACAGCACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCCTCGATCCCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGCTTGATCACCCCGCCCacccccc                                       >  2:5224315/1‑145 (MQ=255)

                                                                                                             gcCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAg                                      <  1:4960989/151‑1 (MQ=255)

                                                                                                               cTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGgc                                    <  1:4024204/151‑1 (MQ=255)

                                                                                                                 tGGGCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATCGCGATCGATGAGCTCGGCTAGCTACAgaccc                                  >  2:3999351/1‑147 (MQ=255)

                                                                                                                   ggCAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTg                                <  1:275682/151‑1 (MQ=255)

                                                                                                                     cAAGGATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGGTGATCAGCTCGGCCAGCTCCAGGCGCTGCa                              >  1:4305788/1‑151 (MQ=255)

                                                                                                                         gATGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTc                          <  2:5070621/151‑1 (MQ=255)

                                                                                                                          aTGCACAGGGCAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc                         <  1:4464209/151‑1 (MQ=255)

                                                                                                                                aGGGCAGGCTGC‑GCCAGGGGGG‑GGGTACAGAACGCACATTTTCGGTTTAACGCACTAGGTATAGGTCTTCGATGGCCGATGTTGGGCCAAAGGGCTCGCCCGCATGGCGGTTTATCAGCTCGGCCAGCTCCCGGCGCTGCAGTTCATGGGt                    >  1:317042/1‑151 (MQ=255)

                                                                                                                                 gggtgggCTGC‑GCCA‑‑GGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTAGAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcg                  <  2:4980209/146‑1 (MQ=255)

                                                                                                                                 ggggAGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTGCAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcg                  <  2:4703853/151‑1 (MQ=255)

                                                                                                                                     aGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttc              >  2:447193/1‑151 (MQ=255)

                                                                                                                                     aGGCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttc              <  2:1169715/151‑1 (MQ=255)

                                                                                                                                       gCTGC‑GCCAG‑GGGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttcgg            >  1:4246309/1‑151 (MQ=255)

                                                                                                                                          gc‑gcCA‑‑GGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTgg         >  1:4772939/1‑151 (MQ=255)

                                                                                                                                                 aggggg‑gggtACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTg    <  2:3645304/149‑1 (MQ=255)

                                                                                                                                                   gggg‑gggtACAGCCCGCACATTGTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGc  <  2:3553690/151‑1 (MQ=255)

CGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGC‑GCCA‑‑GGGT‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGC  >  CP009974/3297045‑3297339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`