| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,733,582 | C→T | intergenic (+30/‑110) | RPPX_16650 → / → RPPX_16655 | hypothetical protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,733,582 | 0 | C | T | 98.8% | 885.9 / NA | 253 | intergenic (+30/‑110) | RPPX_16650/RPPX_16655 | hypothetical protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (3/0); new base T (114/134); total (119/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.99e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
TCAAGAGTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGCCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGGCGCGCG > CP009974/3733434‑3733729 | tCAAGAGTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCg > 1:2996361/1‑151 (MQ=255) cAAGAGTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGCTCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGt > 2:4519914/1‑151 (MQ=255) agagTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGGACTGACATAGCCAGTAATGGGGGCGTGa > 2:4360116/1‑151 (MQ=255) agTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACa < 1:3931318/151‑1 (MQ=255) gTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGGGACaa > 2:2567757/1‑151 (MQ=255) tGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACaaa > 1:5138778/1‑151 (MQ=255) tGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACaaa > 1:1753926/1‑151 (MQ=255) gCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAAt > 1:4961901/1‑151 (MQ=255) gCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGCTTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATCGCCAGTAATGGGGCCGTGACACAAtctt > 2:652277/1‑151 (MQ=255) gAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTca > 2:474554/1‑151 (MQ=255) gAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTca > 1:2727121/1‑151 (MQ=255) gAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGGCGTGACAAAATTTTca > 1:4759238/1‑151 (MQ=255) aGGTGGGCATCAAGGTGTTGTTGGTCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTcac < 2:3828617/151‑1 (MQ=255) aGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGTTCGCGACAAAATCTTctc > 2:1632157/1‑149 (MQ=255) aGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTcac > 2:3289839/1‑151 (MQ=255) ggCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTgg > 2:1084342/1‑151 (MQ=255) aTCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGttt > 2:347484/1‑151 (MQ=255) tCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTa > 1:2310305/1‑151 (MQ=255) tCAAGGTGTTGTGGATCTCGTGGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTa < 2:5134049/151‑1 (MQ=255) gaGGTGTTGTGGAGCGTGTGGAGCGCGTTGCTGCCGGGGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTaaa < 2:460954/150‑1 (MQ=255) ccggTGTCGTGGCTCGTGTTGACCGCCTTGCTGCCGGTGGTGGGGCTGGTGATGTGGGCGATTGCGGGGCCGGAGGGGAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTaaa < 2:3716275/149‑1 (MQ=255) ggTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAaga < 2:5170431/151‑1 (MQ=255) ttgtGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAAt < 1:3289839/151‑1 (MQ=255) tgtgGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATc > 2:2260978/1‑151 (MQ=255) gtgGATCTTGTTGATCGCCCTGCTGCGGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATcc < 2:2482643/151‑1 (MQ=255) ggATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGc < 2:186359/151‑1 (MQ=255) gATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCa < 1:3389480/151‑1 (MQ=255) cTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCAccc < 1:1201236/151‑1 (MQ=255) tggATCGCCTGGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCAt < 2:1854444/149‑1 (MQ=255) tCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAAtg > 2:4760519/1‑151 (MQ=255) cGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAAtgc > 2:849252/1‑151 (MQ=255) gCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGTAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAAtgct > 1:1686769/1‑151 (MQ=255) cTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAAtgctgc < 2:2126780/151‑1 (MQ=255) ttGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCg > 2:4541472/1‑151 (MQ=255) tgctgcCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGt < 2:2105696/151‑1 (MQ=255) gctgcCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGtt > 1:4171808/1‑151 (MQ=255) tgcCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTgg > 1:4457191/1‑151 (MQ=255) gcCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGc > 1:2387709/1‑151 (MQ=255) gcCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGc > 2:5050129/1‑151 (MQ=255) cGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCt > 1:4131022/1‑151 (MQ=255) cGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCt > 2:225162/1‑151 (MQ=255) cGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCt < 1:332298/151‑1 (MQ=255) ggtggtGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTa < 2:3156334/151‑1 (MQ=255) gggggtggGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTa < 2:1994512/148‑1 (MQ=255) gtggtgGGGCCGGTGATCTGGGCGGTTGCCGGGCCGCGGGGCACTGTGCTGCTCTAGGCGCGGTACTGACAGAGCCAGTAATGGGGTCGTGACAAAATTCTCACATCGGTTTAAAGCGAATCCGCACCCGCATAATGCTACGTTAGCCTAg < 1:2616815/151‑1 (MQ=255) tggtggGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAgc < 1:2812638/151‑1 (MQ=255) gggtggGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAgc < 2:294993/150‑1 (MQ=255) gtggGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAgcgc > 1:1892164/1‑151 (MQ=255) tggGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGcc > 2:3668949/1‑151 (MQ=255) gCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCg < 2:3391468/151‑1 (MQ=255) tGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGcc > 2:1467283/1‑151 (MQ=255) ggTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCct < 1:2671726/151‑1 (MQ=255) gTGATCTGGGCGGTTGCCGCGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACGGACATAGCCAGTCATGGGGTCGTGCCAAAATTTTCACTGTGGCTTAAAGAGAATCCGCCCCCGCATAATGCTGTGTTGGCCTGGCGCCATCGCgtc < 2:4186363/151‑1 (MQ=255) gTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCctc > 1:1004276/1‑151 (MQ=255) gTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCctc < 1:126244/151‑1 (MQ=255) gTGAGCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCctc < 2:544909/151‑1 (MQ=255) aTCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTc < 1:2422600/151‑1 (MQ=255) tCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCg < 1:3562106/151‑1 (MQ=255) cTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGc > 2:1747777/1‑151 (MQ=255) gCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAAc < 1:1509934/151‑1 (MQ=255) cGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAAcc < 1:5060785/151‑1 (MQ=255) aTTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGc > 1:4552063/1‑151 (MQ=255) ttGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCa > 1:1607588/1‑151 (MQ=255) ttGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCa < 1:2478100/151‑1 (MQ=255) ccGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACAATGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATc < 1:769024/151‑1 (MQ=255) ggCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTa < 2:4628110/151‑1 (MQ=255) ccGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAgg < 2:2310305/151‑1 (MQ=255) cgcgGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAggg > 2:726810/1‑150 (MQ=255) cgcgGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGa > 1:1025934/1‑151 (MQ=255) cgcgGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGa > 1:3181935/1‑151 (MQ=255) gcgGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGAc > 2:1368666/1‑151 (MQ=255) ggAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGCCCTTc > 2:3998613/1‑151 (MQ=255) gCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCAt < 1:3861176/151‑1 (MQ=255) ggCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATgg > 2:354888/1‑151 (MQ=255) gCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCGTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGc < 2:4900403/151‑1 (MQ=255) ctctAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCt < 2:1220120/151‑1 (MQ=255) ctctAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCt < 2:1985731/151‑1 (MQ=255) ctAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTaa < 1:3798562/151‑1 (MQ=255) tAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAAc < 2:1692984/151‑1 (MQ=255) tAGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAAc > 2:1816560/1‑151 (MQ=255) aGGCGCGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACt < 1:473030/151‑1 (MQ=255) gcgcGGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTcc < 2:3799889/151‑1 (MQ=255) gcgGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGa < 1:953661/151‑1 (MQ=255) cgGTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGAc > 1:3054406/1‑151 (MQ=255) gTACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGc > 2:3411323/1‑151 (MQ=255) tACTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGcc < 1:4054055/151‑1 (MQ=255) aCTGACATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCt > 2:2765957/1‑151 (MQ=255) aCATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGaa < 1:2369344/151‑1 (MQ=255) cATAGCCAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCCAACCGCAATCCTAGGCCCTTCCCATTCATGGCTAACTCCGACGCCTTGAAg > 2:3247440/1‑151 (MQ=255) ccAGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACa < 1:4513120/151‑1 (MQ=255) cAGTAATGGGGTTGTGACAAAATTTTCACATTGTCTCAAAGAGACTCCGCTCGCGCATACTGCTGCGTTGCCCTACCGCCATCGCCTCTGCGCAATCCGCACTCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAg < 2:3106469/151‑1 (MQ=255) aGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAgg < 1:1784074/151‑1 (MQ=255) aGTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAgg < 1:1669508/151‑1 (MQ=255) gTAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGCCTAACTCCGACGCCTTGAAGCAACAggg > 1:2066946/1‑151 (MQ=255) gTAATGGGGTCGTGACAAAATTGTCACATTGGTTTAAAGAGAACCCGCACCCGCATAATGCTGCGGTGGCCTAGCGCCATCGCCGCTTCGCAAACCGCAATCCTAGGCCCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAggg < 2:1614332/151‑1 (MQ=255) tAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGTACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGgc > 2:5238142/1‑151 (MQ=255) tAATGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGgc < 2:1918480/151‑1 (MQ=255) gaaTGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGgc < 1:2203687/150‑1 (MQ=255) aTGGGGTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGgcgc > 1:3680415/1‑151 (MQ=255) ggggTCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGgcgcgc > 1:4348261/1‑151 (MQ=255) | TCAAGAGTGGCAGCGAGGTGGGCATCAAGGTGTTGTGGATCTTGTTGATCGCCTTGCTGCCGGTGGTGGGGCTGGTGATCTGGGCGATTGCCGGGCCGCGGGGAAATGTGCGGCTCTAGGCGCGGTACTGACATAGCCAGTAATGGGGCCGTGACAAAATTTTCACATTGGTTTAAAGAGAATCCGCACCCGCATAATGCTGCGTTGGCCTAGCGCCATCGCCTCTTCGCAAACCGCAATCCTAGGACCTTCCCATTCATGGCTAACTCCGACGCCTTGAAGCAACAGGGCGCGCG > CP009974/3733434‑3733729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |