Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 5,157,352 C→T intergenic (+178/+65) RPPX_22875 → / ← dnaE2 integrase/DNA polymerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099745,157,3520CT100.0% 799.5 / NA 214intergenic (+178/+65)RPPX_22875/dnaE2integrase/DNA polymerase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (114/100);  total (114/100)

Only 100 of 218 total aligned reads displayed.

GGGGGGCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGCCGC  >  CP009974/5157204‑5157498
                                                                                                                                                    |                                                                                                                                                  
  ggggCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCgg                                                                                                                                                <  1:4279777/151‑1 (MQ=255)
    ggCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTg                                                                                                                                              <  1:1310139/151‑1 (MQ=255)
    ggCTCACGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTg                                                                                                                                              <  1:1779989/151‑1 (MQ=255)
       tCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGgct                                                                                                                                           >  2:4791821/1‑151 (MQ=255)
           gCCTAGTGGCAAACGTGGCTGTCGAGCAAGGTAGAACGCACCGTGGCCGATGAATGGTTGGGGCAGCCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCtt                                                                                                                                       <  2:4299530/151‑1 (MQ=255)
           gCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGTCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCtt                                                                                                                                       <  2:4043651/151‑1 (MQ=255)
           gCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCtt                                                                                                                                       <  2:43249/151‑1 (MQ=255)
            ccTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTc                                                                                                                                      >  1:1884914/1‑151 (MQ=255)
              tAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgc                                                                                                                                    >  2:283671/1‑151 (MQ=255)
               aGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgcg                                                                                                                                   >  1:776078/1‑151 (MQ=255)
               aGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTcgcg                                                                                                                                   >  1:2923554/1‑151 (MQ=255)
                 tGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCggg                                                                                                                                 >  2:2364541/1‑151 (MQ=255)
                   gCAAGCGTGGCTGTCGACCAAAGTATAACGCACCGTGGCCGATGAATGGTAGGGGCAGTCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCt                                                                                                                               <  1:982389/151‑1 (MQ=25)
                   gCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCt                                                                                                                               <  2:3244227/151‑1 (MQ=255)
                    cAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTc                                                                                                                              >  2:3344113/1‑151 (MQ=255)
                        cGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGccc                                                                                                                          >  2:4265160/1‑151 (MQ=255)
                        cGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGccc                                                                                                                          <  1:4365706/151‑1 (MQ=255)
                         gTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCg                                                                                                                         >  1:1962940/1‑151 (MQ=255)
                          tGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGc                                                                                                                        >  1:4000454/1‑151 (MQ=255)
                           ggCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGcc                                                                                                                       >  2:306401/1‑150 (MQ=255)
                           ggCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCt                                                                                                                       >  2:1671768/1‑151 (MQ=255)
                             cTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTcc                                                                                                                     >  1:668240/1‑151 (MQ=255)
                               gTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCca                                                                                                                   >  1:3639589/1‑151 (MQ=255)
                                tCGACCAAGGTATAACGCACCGTGGCCGATGAATTGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCcac                                                                                                                  >  1:3716488/1‑151 (MQ=255)
                                  gACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAg                                                                                                                <  1:4902956/151‑1 (MQ=255)
                                  gACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAg                                                                                                                >  1:3424008/1‑151 (MQ=255)
                                  gACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGCGGCTGCTTCGCGGGCTCGCCCGCTCCCACAg                                                                                                                >  2:1933594/1‑151 (MQ=255)
                                   aCCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAgg                                                                                                               <  1:3733634/151‑1 (MQ=255)
                                    ccAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAggg                                                                                                              >  1:3900128/1‑151 (MQ=255)
                                     cAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGa                                                                                                             <  1:235930/151‑1 (MQ=255)
                                     cAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGa                                                                                                             >  2:3858130/1‑151 (MQ=255)
                                      aaGGTCTCACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGaa                                                                                                            <  2:3615130/151‑1 (MQ=255)
                                      aaGGTAGAGCGGACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGaa                                                                                                            <  1:2857971/151‑1 (MQ=255)
                                         gTATACCGCGCCGCGGCGGACGAGAGGCTGGGGCAGGCTCAAGGCTGCGGGCGGTCGCTGTGGGAGCGGGCCGGCCCGCGAGCACCGGCGAGGCCGGTGCCCTGCCATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcg                                                                                                         <  2:256332/151‑1 (MQ=17)
                                         gTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcg                                                                                                         >  1:1624064/1‑151 (MQ=255)
                                           ataACGCAGGGTGGCGGATGAGTGGTTGGGGGACGCTCAGGGCTGCAGGGGGTCAATGTGGGAGCGGGCATGCCCGCGAGCACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcgcg                                                                                                       <  1:5139352/151‑1 (MQ=18)
                                           ataACGCACGGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACcgcg                                                                                                       <  2:2769009/151‑1 (MQ=255)
                                              aggCACCGTGGGCGATGAGTGGTTGGGGCGGCCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCaa                                                                                                    <  2:1226423/149‑1 (MQ=21)
                                                 cACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGtt                                                                                                 <  1:3213129/151‑1 (MQ=255)
                                                  aCCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTc                                                                                                >  1:1205702/1‑151 (MQ=255)
                                                    cGTGGCCAATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCg                                                                                              <  1:1104075/151‑1 (MQ=255)
                                                         ccGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGt                                                                                         >  1:591295/1‑151 (MQ=255)
                                                           gATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTg                                                                                       >  1:872097/1‑151 (MQ=255)
                                                             tGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGCACCGCGCAAGTTCCGAGCGTCggg                                                                                     >  2:4802292/1‑151 (MQ=255)
                                                             tGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCTAGCGTTggg                                                                                     <  1:3123937/151‑1 (MQ=255)
                                                                aTGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCCAGTTCCGAGCGTTGGGGTc                                                                                  >  2:4600075/1‑151 (MQ=255)
                                                                aTGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTc                                                                                  <  2:672058/151‑1 (MQ=255)
                                                                aTGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTc                                                                                  >  1:170839/1‑151 (MQ=255)
                                                                 tGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCa                                                                                 <  1:2717621/151‑1 (MQ=255)
                                                                  ggTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAg                                                                                >  1:4178944/1‑151 (MQ=255)
                                                                   gtgggggCAGGATCAAGGCAGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCGGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGt                                                                               <  2:1748709/148‑1 (MQ=21)
                                                                     tGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTgg                                                                             <  2:2438163/151‑1 (MQ=255)
                                                                      ggggCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGa                                                                            <  2:1962940/151‑1 (MQ=255)
                                                                       gggCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGaa                                                                           <  2:372090/151‑1 (MQ=255)
                                                                         gCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAAt                                                                         <  1:4948632/151‑1 (MQ=255)
                                                                              cTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCgg                                                                    <  1:172368/151‑1 (MQ=255)
                                                                                 aaGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTg                                                                 >  1:2071848/1‑151 (MQ=255)
                                                                                     cTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTa                                                             <  1:508891/151‑1 (MQ=255)
                                                                                      tGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTAc                                                            >  1:1510260/1‑151 (MQ=255)
                                                                                        cAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACAt                                                          >  1:2299969/1‑151 (MQ=255)
                                                                                         aGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATc                                                         >  1:4851943/1‑151 (MQ=255)
                                                                                            cGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAg                                                      >  2:399189/1‑151 (MQ=255)
                                                                                             ggTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGTTGCGTACATcctgt                                                     >  1:2451217/1‑148 (MQ=255)
                                                                                             ggTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGc                                                     <  1:1991231/151‑1 (MQ=255)
                                                                                                cAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCt                                                  <  1:4720148/151‑1 (MQ=255)
                                                                                                 aaTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGTGTTGGGGTCAGAGGAAATCCCGGCTGCGTACATCCAGCCCtt                                                 >  2:2257548/1‑151 (MQ=255)
                                                                                                   tgtgGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTgc                                               >  1:2458500/1‑151 (MQ=255)
                                                                                                       ggAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGGCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTgcagca                                           >  1:2638001/1‑151 (MQ=255)
                                                                                                         aGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCagcagc                                         <  2:2460072/151‑1 (MQ=255)
                                                                                                            gggCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGa                                      >  1:2511531/1‑151 (MQ=255)
                                                                                                            gggCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGa                                      >  2:3382629/1‑151 (MQ=255)
                                                                                                             ggCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACACGGAACCGCGCAAGTTCCCAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTAGCCGCAGCGGAc                                     >  2:4902931/1‑151 (MQ=25)
                                                                                                              gCATGCCCGCGAACACCGGCAAGGCCGGTGCGCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACt                                    <  2:5236524/151‑1 (MQ=255)
                                                                                                              gCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACt                                    >  2:4227072/1‑151 (MQ=255)
                                                                                                                  gCCCGCGAAGACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTcaca                                <  2:4095019/151‑1 (MQ=255)
                                                                                                                  gCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTcaca                                >  2:3514620/1‑151 (MQ=255)
                                                                                                                     cgcgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcc                             <  2:3605387/151‑1 (MQ=255)
                                                                                                                       cgAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctc                           <  1:3983702/151‑1 (MQ=255)
                                                                                                                        gAACCCCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctcc                          <  1:13491/151‑1 (MQ=255)
                                                                                                                        gAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctcc                          <  1:2827477/151‑1 (MQ=255)
                                                                                                                        gAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctcc                          <  2:374190/151‑1 (MQ=255)
                                                                                                                        gAACACCGGCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACAtcctcc                          >  2:1475419/1‑151 (MQ=255)
                                                                                                                            acCGGCAAGGCCGGTGCCAGGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAcc                      <  2:560974/151‑1 (MQ=255)
                                                                                                                              cGGCACGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGCCAGTGGCAACCCCCGCTGCGTACACCCAGCCCTTGCAGCAGCGGACTCACACCCTCCAAccgc                    >  2:1053039/1‑151 (MQ=25)
                                                                                                                               ggCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgcc                   <  2:4793707/151‑1 (MQ=255)
                                                                                                                               ggCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgcc                   <  2:1971276/151‑1 (MQ=255)
                                                                                                                                gCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgccg                  >  1:2246040/1‑151 (MQ=255)
                                                                                                                                gCAAGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAAccgccg                  <  1:1696298/151‑1 (MQ=255)
                                                                                                                                  aaGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCcgcg                >  1:4147784/1‑151 (MQ=255)
                                                                                                                                   aGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCgcgc               >  2:3692394/1‑151 (MQ=255)
                                                                                                                                   aGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCgcgc               <  2:1817838/151‑1 (MQ=255)
                                                                                                                                   aGGCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCgcgc               <  2:4272998/151‑1 (MQ=255)
                                                                                                                                    ggCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCCACCGCCgcgcc              >  2:3937920/1‑150 (MQ=255)
                                                                                                                                     gCCGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCATCCGCCGCGCaa             >  2:1085816/1‑151 (MQ=255)
                                                                                                                                       cGGTGCCGTGCAATGCGGTGGGTGCTTCGCGGGCTCGCCCGCTCCCACATCGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATc           <  2:5024489/151‑1 (MQ=255)
                                                                                                                                       cGGTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATc           <  1:1497868/151‑1 (MQ=255)
                                                                                                                                       cGGTGCCCTGCAATGCGGTGGCTGCTTCGCGCGCTCGCCCTCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATc           <  1:4772723/151‑1 (MQ=255)
                                                                                                                                        ggTGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCa          >  1:4718447/1‑151 (MQ=255)
                                                                                                                                          tGCCCTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAgg        >  2:4455859/1‑151 (MQ=255)
                                                                                                                                            cccTGCAATGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGtc      >  2:5157388/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GGGGGGCTCAGGCCTAGTGGCAAACGTGGCTGTCGACCAAGGTATAACGCACCGTGGCCGATGAATGGTTGGGGCAGGCTCAAGGCTGCAGGCGGTCAATGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCCTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCTCCCACAGGGAACCGCGCAAGTTCCGAGCGTTGGGGTCAGTGGAAATCCCGGCTGCGTACATCCAGCCCTTGCAGCAGCGGACTCACATCCTCCAACCGCCGCGCAATCAGGTGCCGC  >  CP009974/5157204‑5157498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑