BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	5,513,872	T→C	Q264R (CAG→CGG)	RPPX_24600 ←	integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	5,513,872	0	T	C	100.0%	715.9 / NA	225	Q264R (CAG→CGG)	RPPX_24600	integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (99/126); total (99/126)

Only 100 of 225 total aligned reads displayed.

GTTCGAGACTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTGCAGCCTGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCAGATTTGAG  >  CP009974/5513724‑5514014

   cGAGACTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGcc                                                                                                                                           <  1:1978829/151‑1 (MQ=255)

    gagaCTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGccc                                                                                                                                          >  1:2237935/1‑151 (MQ=255)

     agaCTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCt                                                                                                                                         <  1:2975186/151‑1 (MQ=255)

     agaCTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCt                                                                                                                                         >  1:5187005/1‑151 (MQ=255)

      gaCTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTg                                                                                                                                        >  2:754987/1‑151 (MQ=255)

       agttATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTCAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGt                                                                                                                                       <  2:5117940/149‑1 (MQ=255)

       aCTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGt                                                                                                                                       >  1:3576372/1‑151 (MQ=255)

        cTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGGCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTa                                                                                                                                      <  2:4521612/151‑1 (MQ=255)

        cTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGTCTTGCGGCCCTTCGCGGGCTCGCCCCGGCTCCCACAGATTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTgca                                                                                                                                      >  2:96482/1‑149 (MQ=37)

        cTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACATCCCGAGCCCTGTa                                                                                                                                      >  1:1001979/1‑151 (MQ=255)

         ttATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTAt                                                                                                                                     <  1:3092468/151‑1 (MQ=255)

           aTGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTc                                                                                                                                   >  1:2373259/1‑151 (MQ=255)

               cTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGGACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCcaca                                                                                                                               <  1:82592/151‑1 (MQ=255)

               cTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCcaca                                                                                                                               <  2:633696/151‑1 (MQ=255)

               cTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCcaca                                                                                                                               <  2:633476/151‑1 (MQ=255)

                tCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAg                                                                                                                              >  1:2065538/1‑151 (MQ=255)

                 caggcaggAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAgg                                                                                                                             <  1:4943643/151‑1 (MQ=255)

                    gcaggAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCt                                                                                                                          >  1:4170310/1‑151 (MQ=255)

                      aggAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCGAAAGTTGGACAGTTCGAAGCTACACCCCGAGCCCTGTATTCCACAGGGCTcc                                                                                                                        >  2:4612049/1‑150 (MQ=37)

                      aggAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCa                                                                                                                        >  1:2754799/1‑151 (MQ=255)

                       ggggTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAg                                                                                                                       <  2:3861245/148‑1 (MQ=255)

                       ggacgcgCAGGCGCATATCACTACGAGTGAATGAACCGGGGACACCTTGCGGCACTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAg                                                                                                                       <  2:3860288/145‑1 (MQ=21)

                        gAGTGGCAGGCGGGTATCAATACGATTGAATGACCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATGTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAgg                                                                                                                      <  2:4731111/151‑1 (MQ=255)

                        gAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAgg                                                                                                                      <  2:4364329/151‑1 (MQ=255)

                         aGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGc                                                                                                                     <  1:4280216/151‑1 (MQ=255)

                             gCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCAtt                                                                                                                 <  1:3275896/151‑1 (MQ=255)

                             gCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCAtt                                                                                                                 >  1:3924963/1‑151 (MQ=255)

                               aGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGa                                                                                                               <  2:2127853/151‑1 (MQ=255)

                               aGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGa                                                                                                               <  1:4728317/151‑1 (MQ=255)

                                ggCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAg                                                                                                              <  2:1319606/151‑1 (MQ=255)

                                  cGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGtc                                                                                                            >  1:2551535/1‑151 (MQ=255)

                                   gggTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGtct                                                                                                           <  2:2299502/151‑1 (MQ=255)

                                   gggTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGtct                                                                                                           >  1:2144888/1‑151 (MQ=255)

                                    ggTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGtctc                                                                                                          <  2:2517407/151‑1 (MQ=255)

                                    ggTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGtctc                                                                                                          >  1:3699024/1‑151 (MQ=255)

                                     gTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTGCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCa                                                                                                         <  2:1008195/151‑1 (MQ=255)

                                      tATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAg                                                                                                        >  1:482727/1‑151 (MQ=255)

                                       aTCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGc                                                                                                       <  2:273297/151‑1 (MQ=255)

                                        tCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCt                                                                                                      >  2:4138369/1‑151 (MQ=255)

                                         cAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTACTCCACAGGGCTCAGGCCATTGAGTCTCAGCtt                                                                                                     >  1:554152/1‑151 (MQ=255)

                                          aaTACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTg                                                                                                    <  1:3543857/151‑1 (MQ=255)

                                           aTACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACCGGGCTCAGGCCATTGAGTCTCAGCTTGa                                                                                                   >  2:919533/1‑151 (MQ=255)

                                            tACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGAt                                                                                                  <  1:3513250/151‑1 (MQ=255)

                                             aCGATTGAATGACCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATg                                                                                                 <  1:2390597/151‑1 (MQ=255)

                                              cGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGc                                                                                                <  1:4399197/151‑1 (MQ=255)

                                               gATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCg                                                                                               >  2:322722/1‑151 (MQ=255)

                                               gATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCg                                                                                               >  1:870685/1‑151 (MQ=255)

                                                aTTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCGCAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGa                                                                                              >  2:3130155/1‑151 (MQ=255)

                                                aTTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGa                                                                                              <  1:4496326/151‑1 (MQ=255)

                                                 ttGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCCGCTTGATGCGAt                                                                                             >  2:170723/1‑151 (MQ=255)

                                                 ttGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGAt                                                                                             >  1:995267/1‑151 (MQ=255)

                                                   gaatgaaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCGCACAATTTGGGCTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTCAGTCTCAGCTTGATGCGATCa                                                                                           >  2:5128801/1‑151 (MQ=18)

                                                    aatgaaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCAt                                                                                          >  1:116855/1‑151 (MQ=255)

                                                    aatgaaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCAt                                                                                          <  2:2395472/151‑1 (MQ=255)

                                                    aatgaaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCAt                                                                                          >  2:1804174/1‑151 (MQ=255)

                                                        ggcgggggCCGCCTTGCGGCGCGTGGCGGGCTCGCCCTGGGTCCCACAATTTGGACTGCCCCCCAAGAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGtt                                                                                      <  1:4614110/147‑1 (MQ=17)

                                                        aaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGCGCCCTGTATTCCACAGGGCTCAGGCCCTTGAGTCTCAGCTTGATGCCATCACGGtg                                                                                      >  2:3503171/1‑150 (MQ=18)

                                                        aaCCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGtt                                                                                      <  2:1083469/151‑1 (MQ=255)

                                                           cGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTgta                                                                                   <  1:3956265/151‑1 (MQ=255)

                                                              ggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCAt                                                                                          <  2:4155599/141‑1 (MQ=255)

                                                              ggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCAt                                                                                          >  1:4155599/1‑141 (MQ=255)

                                                               gccgccTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGtagtag                                                                               >  1:4472701/1‑151 (MQ=255)

                                                                ccgccTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTagtagt                                                                              >  1:796541/1‑151 (MQ=255)

                                                                 cgccTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACCATTTGGACTGCCCCCCCATAGTTGGACAGTTCTCAGCCACAGCCCGAGCCCCGTATTCCACAGGGCTCAGGCCACTGAGGCTCAGATTGATGCGATCCTGGGTGTAGTAGTg                                                                             >  1:4065216/1‑151 (MQ=17)

                                                                 cgccTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTg                                                                             >  1:4673938/1‑151 (MQ=255)

                                                                  gccTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGGCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGa                                                                            >  1:3259120/1‑151 (MQ=255)

                                                                          gCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTc                                                                    >  1:1536457/1‑151 (MQ=255)

                                                                           cccTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCa                                                                   <  1:1058339/151‑1 (MQ=255)

                                                                           cccTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCa                                                                   <  1:754987/151‑1 (MQ=255)

                                                                            ccTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCAt                                                                  <  1:2887176/151‑1 (MQ=255)

                                                                                cgcgGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAg                                                              >  1:3053839/1‑151 (MQ=255)

                                                                                  cgGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGAc                                                            <  1:4513613/151‑1 (MQ=255)

                                                                                   gggCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGAcc                                                           >  1:3412869/1‑151 (MQ=255)

                                                                                      cTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGc                                                        >  2:4018397/1‑151 (MQ=255)

                                                                                        cGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTCGGACAGTTCTAAGCTACATCCCGAGCCCCGTATCCCACAGGGCTCAGGCCATCGCGTCCCAGCTTGATACGACCATGGCTCTAGCAGTCAATGTACCCCTCCAGATCCGgtc                                                      >  2:3585272/1‑151 (MQ=255)

                                                                                         gCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGctct                                                     >  2:590/1‑151 (MQ=255)

                                                                                            cTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTGGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCGCTCAg                                                  >  2:3345339/1‑151 (MQ=255)

                                                                                                 tCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGCTGTAGTAGTGAATGTACTCATCCAGACACGCTCTCAGCtcat                                             >  2:4586309/1‑151 (MQ=255)

                                                                                                  cccACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCtcatc                                            >  2:3660710/1‑151 (MQ=255)

                                                                                                     acaATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAAt                                         <  2:25700/151‑1 (MQ=255)

                                                                                                        aTTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGct                                      >  1:1115176/1‑151 (MQ=19)

                                                                                                          ttGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGctct                                    <  2:4472701/151‑1 (MQ=18)

                                                                                                           tgtaCTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCtctc                                   <  2:2793567/148‑1 (MQ=9)

                                                                                                             gACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGa                                 <  1:3809603/151‑1 (MQ=9)

                                                                                                              aCTGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGaa                                >  1:2997395/1‑151 (MQ=12)

                                                                                                                tGCCCCCCAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAAc                              <  2:3460961/151‑1 (MQ=14)

                                                                                                                    ccccAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCtt                          <  1:1684171/151‑1 (MQ=14)

                                                                                                                      ccAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCa                        <  2:3098895/151‑1 (MQ=14)

                                                                                                                      ccAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCa                        <  1:3130155/151‑1 (MQ=12)

                                                                                                                       cAAAAGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAg                       >  2:1360277/1‑151 (MQ=9)

                                                                                                                        aaaaGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAgg                      >  2:5044853/1‑151 (MQ=12)

                                                                                                                        aaaaGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAgg                      <  2:972354/151‑1 (MQ=12)

                                                                                                                          aaGTTGGACAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTa                    <  2:1685154/151‑1 (MQ=12)

                                                                                                                                 aCAGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAAc             <  1:5057819/151‑1 (MQ=12)

                                                                                                                                   aGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTc           >  1:2284209/1‑151 (MQ=9)

                                                                                                                                   aGTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTc           >  2:2930388/1‑151 (MQ=9)

                                                                                                                                    gTTCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCa          >  2:2212474/1‑151 (MQ=9)

                                                                                                                                      tCTAAGCTACAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCAGa        <  2:4306996/151‑1 (MQ=14)

                                                                                                                                            ctacAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCAGATTTGAg  >  1:1822621/4‑151 (MQ=1)

                                                                                                                                            ctacAGCCCGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCAGATTTGAg  <  2:835092/148‑1 (MQ=1)

GTTCGAGACTTATGGCTCAGGCAGGAGTGGCAGGCGGGTATCAATACGATTGAATGAACCGGGGCCGCCTTGCGGCCCTTCGCGGGCTCGCCCTCGCTCCCACAATTTGGACTGCCCCCCAAAAGTTGGACAGTTCTAAGCTGCAGCCTGAGCCCTGTATTCCACAGGGCTCAGGCCATTGAGTCTCAGCTTGATGCGATCATGGTTGTAGTAGTGAATGTACTCATCCAGACCCGCTCTCAGCTCATCAATGCTCTCGAAACGCTTCAGGTAGAAAAACTCAGATTTGAG  >  CP009974/5513724‑5514014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`