| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,515,235 | A→G | intergenic (‑22/+120) | RPPX_24605 ← / ← RPPX_24610 | transposase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,515,235 | 0 | A | G | 98.4% | 622.2 / ‑0.2 | 186 | intergenic (‑22/+120) | RPPX_24605/RPPX_24610 | transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (72/110); total (73/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01 | |||||||||||
Only 100 of 186 total aligned reads displayed.
GGCCACCCAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCT > CP009974/5515088‑5515380 | ggacACCCAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGgtg < 1:3350459/148‑1 (MQ=1) caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct < 1:1574893/148‑1 (MQ=1) caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct < 2:1064351/148‑1 (MQ=1) caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct > 1:2344824/4‑151 (MQ=1) aaaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAt < 2:941624/151‑1 (MQ=14) aaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAtt > 2:1630598/1‑151 (MQ=14) ggtACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAg < 2:2746209/149‑1 (MQ=21) tACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGa < 2:476231/151‑1 (MQ=25) tACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGa > 2:1792441/1‑151 (MQ=25) ccTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATc < 2:2310204/151‑1 (MQ=38) cTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATcc < 1:4856142/151‑1 (MQ=255) cTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATcc > 2:2238333/1‑151 (MQ=255) tacgtgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCa < 1:3082825/148‑1 (MQ=255) tAAGTGTTGAGCCACCTTTCGGAAGCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCa < 2:1734761/151‑1 (MQ=255) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc > 2:3944664/1‑151 (MQ=255) aaGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCAc > 2:4196178/1‑151 (MQ=255) tgtTGAGCCCTCTTTCGGTAACCGTTGCTGTCTTCCATGTATCGTGTGATCGCTGTGAGCTTGAATTTCTCGGTGTACTTACCCCTAGCTCCCCCGAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCCGTCCAATTTCAGGATCCAGGAc < 2:3806295/151‑1 (MQ=14) gtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCa > 2:1207376/1‑139 (MQ=21) gtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAcc > 2:2114287/1‑151 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 2:149174/151‑1 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt > 1:4374190/1‑151 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 2:4801163/151‑1 (MQ=255) gCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgt < 2:1064319/151‑1 (MQ=255) cACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTgg < 2:4416057/151‑1 (MQ=255) aCCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 1:3760747/151‑1 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa < 1:939593/151‑1 (MQ=255) tttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGc > 1:2433711/1‑151 (MQ=255) cGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCggg > 2:2828292/1‑151 (MQ=255) cGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCggg > 1:4543238/1‑151 (MQ=255) ggAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCCAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGc < 1:2458282/151‑1 (MQ=255) gAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCg < 1:491846/151‑1 (MQ=255) aaaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGa < 1:2440365/151‑1 (MQ=255) cagctgtgctgcCTTCCCTGTACTCTCTGATCCCTGTCATCTTGACTTGCTCGCTGTACTTGCCCATACATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAg < 2:3370724/145‑1 (MQ=18) aaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACCTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAg < 2:4986979/151‑1 (MQ=255) aCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGc > 2:3907863/1‑151 (MQ=255) cGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGccc > 1:2968188/1‑151 (MQ=255) cGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGccc < 1:2715274/151‑1 (MQ=255) tttGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcg < 2:4696349/150‑1 (MQ=255) gctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGa > 1:3519842/1‑151 (MQ=255) ctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCGTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGaa < 2:3143814/151‑1 (MQ=255) tgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAg > 2:4708634/1‑151 (MQ=255) ccGTCCAGGTAGGCTGTGCGCGCTGTGAGCTTGACTTGCTCTGTGTACTTCCCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAggg < 1:778471/151‑1 (MQ=21) gTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCt < 2:1993325/151‑1 (MQ=255) tCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTg < 1:1998642/151‑1 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCg < 2:3611979/130‑1 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGc > 1:28960/1‑151 (MQ=255) cAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCa < 2:2094756/151‑1 (MQ=255) cAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCa > 2:3626618/1‑151 (MQ=255) aGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCaa > 1:1364391/1‑151 (MQ=255) gCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagcagc > 2:592264/1‑151 (MQ=255) tgtgATCGCTGTGAGCTTGTATTGCTCGGTGTACTTACCCATAGCTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCTGccc < 2:4313205/151‑1 (MQ=255) gtgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 2:1902887/151‑1 (MQ=255) tgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCa > 2:2966567/1‑151 (MQ=255) tCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAAtt < 2:3046247/151‑1 (MQ=255) cGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTa < 1:4458998/151‑1 (MQ=255) tgtgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACAt < 1:742484/151‑1 (MQ=255) tgtgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACAt > 1:4075404/1‑151 (MQ=255) gtgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACAtt > 1:1263475/1‑151 (MQ=255) gtgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACAtt > 1:835689/1‑151 (MQ=255) ggAGCTTGAATTGCTCGGTGTGCTTACCCATAGCTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTg < 2:3858567/150‑1 (MQ=255) aGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTc < 1:5218435/151‑1 (MQ=255) gCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCt < 1:4556409/151‑1 (MQ=255) gCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCt < 1:2685281/151‑1 (MQ=255) cTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTg > 1:1962467/1‑151 (MQ=255) ttGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGa > 1:2321870/1‑151 (MQ=255) ttGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTAGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGa < 1:725156/151‑1 (MQ=255) tGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAg < 1:2997145/151‑1 (MQ=255) gAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGc > 2:1940651/1‑151 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 1:4959914/151‑1 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 1:521841/151‑1 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 2:5037779/151‑1 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 1:1067437/151‑1 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTGGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 2:174291/151‑1 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg > 1:5074101/1‑151 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg > 1:3395713/1‑151 (MQ=255) tGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGaa > 2:3960419/1‑151 (MQ=255) gCTCGGTGTACTTACCCATAGCTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAt < 2:2397034/151‑1 (MQ=255) cTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc < 1:4831699/151‑1 (MQ=255) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc < 1:3014083/151‑1 (MQ=255) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc > 2:1876861/1‑151 (MQ=255) tgtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTg < 2:1338506/151‑1 (MQ=255) aCTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCt < 1:3983122/151‑1 (MQ=255) cTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCtt < 1:3783789/151‑1 (MQ=255) tgcccATAGAGCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGTGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCa < 2:4028287/149‑1 (MQ=255) cccATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAgg > 1:3142826/1‑151 (MQ=255) ccATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGa > 1:365555/1‑151 (MQ=255) cATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGaa > 2:2417093/1‑151 (MQ=255) aTAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAg > 1:2078089/1‑151 (MQ=255) gATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCa > 1:3757941/1‑151 (MQ=255) gATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCa < 2:5224411/151‑1 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt < 1:546005/151‑1 (MQ=255) ccccTAGGGTTGGATTGGTGTCCCACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGc < 1:1382088/151‑1 (MQ=255) gaaGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAGTTCCGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTg < 2:4026823/150‑1 (MQ=255) aaGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCGGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGc < 1:2084261/151‑1 (MQ=255) aaGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGACTCTCCTGGCTTCAGGAAGCCAGTGCCTGc > 2:3184425/1‑151 (MQ=255) gggTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGa < 2:5180631/151‑1 (MQ=255) gTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAAc > 2:1287018/1‑151 (MQ=255) ttGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACg > 1:1742971/1‑151 (MQ=255) ggATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCt > 1:1090348/1‑151 (MQ=255) ggATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCt > 2:2673599/1‑151 (MQ=255) | GGCCACCCAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCT > CP009974/5515088‑5515380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |