| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,595,092 | T→C | intergenic (+724/‑188) | RPPX_24905 → / → RPPX_24915 | type VI secretion protein VgrG/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,595,092 | 0 | T | C | 99.1% | 796.2 / ‑4.5 | 227 | intergenic (+724/‑188) | RPPX_24905/RPPX_24915 | type VI secretion protein VgrG/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (106/119); total (107/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 228 total aligned reads displayed.
CTGCCTTTGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACTCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCGCCTT > CP009974/5594944‑5595239 | cTGCCTTTGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACAcccc < 1:753701/151‑1 (MQ=255) tGCCTTTGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCt < 1:646902/151‑1 (MQ=255) gCCTTTGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTg < 1:1912184/151‑1 (MQ=255) tttGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGCAACACCCCTGCCg > 2:3651900/1‑151 (MQ=255) tttGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCg > 1:1880527/1‑151 (MQ=255) tGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCGCTGCCGCa > 2:397965/1‑151 (MQ=255) gACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTCTGGATAGAAACACCCCTGCCGCaa > 2:4924301/1‑151 (MQ=255) ccTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTg < 1:1346776/151‑1 (MQ=255) ccTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTg < 1:3729741/151‑1 (MQ=255) cagcagCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACCTACGCCTATGGATAGAAACACCCCTGCCGCAACTGagag > 1:2982936/1‑151 (MQ=255) cagcagCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGagag < 1:5088280/151‑1 (MQ=255) agcagcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGc > 1:1009137/1‑151 (MQ=255) agcagcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGc < 2:1275566/151‑1 (MQ=255) agcagcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGc < 1:510400/151‑1 (MQ=255) agcagcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGc > 2:859872/1‑151 (MQ=255) gcagcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCa < 2:3141817/151‑1 (MQ=255) agcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACt < 1:4594204/151‑1 (MQ=255) agcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACt > 2:408544/1‑151 (MQ=255) agcTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACt > 2:336783/1‑151 (MQ=255) ttGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCaa > 2:228821/1‑151 (MQ=255) ttGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCaa > 2:4698044/1‑151 (MQ=255) tGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAAt < 2:5151857/151‑1 (MQ=255) gAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAAtt < 2:2705958/151‑1 (MQ=255) gAACTTGAGCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAAtt < 2:4526124/151‑1 (MQ=255) aaCTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAAttt > 1:3086250/1‑151 (MQ=255) cTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTcc < 1:2176906/151‑1 (MQ=255) cTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTcc > 2:3302772/1‑151 (MQ=255) ttGATCGGGTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCg < 2:5235127/151‑1 (MQ=255) gATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGa < 1:1966032/151‑1 (MQ=255) gATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGa < 1:4045975/151‑1 (MQ=255) aTCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAg < 1:333634/151‑1 (MQ=255) aTCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAg < 2:1126250/151‑1 (MQ=255) tCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGc < 1:2725142/151‑1 (MQ=255) gCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAg > 1:2555383/1‑151 (MQ=255) gCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGaa < 2:1782049/151‑1 (MQ=255) aGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGtt < 2:1014850/151‑1 (MQ=255) aGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGtt < 1:1832829/151‑1 (MQ=255) aGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCg > 1:2250754/1‑151 (MQ=255) aGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGACAGAAACACCCCTGCCTCCACTGAGAGCACTCAATTTCCGTACCGAGCAAATTGcc > 2:3443048/1‑150 (MQ=255) aTGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGcc < 2:733263/151‑1 (MQ=255) aTGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGcc > 1:910157/1‑151 (MQ=255) gCACAAGCGCTTTGTCCGCTCATTGGCGCATGAGGTCTTGGCCATGTCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCaa < 2:3728330/151‑1 (MQ=255) cacaAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAat < 2:1252600/151‑1 (MQ=255) caAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAattc < 1:2013843/151‑1 (MQ=255) gCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAattcatt < 2:4826401/151‑1 (MQ=255) gCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAattcatt > 2:1400352/1‑151 (MQ=255) aCTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCg < 1:4895948/151‑1 (MQ=255) aCTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCg > 2:2465206/1‑151 (MQ=255) cTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCgg < 1:5061058/151‑1 (MQ=255) tttGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGgc > 2:5225494/1‑151 (MQ=255) tGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGgctg > 1:4785241/1‑151 (MQ=255) gTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGgctgc < 2:3092914/151‑1 (MQ=255) tCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGCTAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTTCGGGCCAATGCATGCGgctgct > 1:463250/1‑151 (MQ=255) ccTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTa < 1:859872/151‑1 (MQ=255) tcATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCACCCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCg < 2:4008882/151‑1 (MQ=255) tcATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCg < 2:2899982/151‑1 (MQ=255) tcATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCg < 1:4071888/151‑1 (MQ=255) cATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCgg > 2:5195741/1‑151 (MQ=255) aTTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCggg > 1:3877783/1‑151 (MQ=255) ttGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGc > 2:1121391/1‑151 (MQ=255) gcgcATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGcaca < 1:2433407/151‑1 (MQ=255) gcgcATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGcaca < 1:4845407/151‑1 (MQ=255) cATGAGGGCTTGGCCGTGGCCCCCGTTGCCAATAGTCCCTTGGCGGAGATACGCCGATGGACGGAATCTCCCCTGGCGCAATTGAGAGGATCCAATGTCCGGAGCGCGGAAGTTGCGGGGCAATTCATTCGGCTGCTAGCCGGGCACAtgt < 2:3558711/151‑1 (MQ=255) tGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATgtgg < 1:3021977/151‑1 (MQ=255) cTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGtgatga > 1:4644775/1‑151 (MQ=255) ttGGCCATACCGACCCATGACAGCCATACCTTGGCGGACATACGCCTATAGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAg < 1:3651900/151‑1 (MQ=255) ccATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGCGGAAGTTGCGGGGCAATTCAGTCCGCTGCTAGCCGGGCACATGTGGTGATCAGCAAt > 1:5228639/1‑151 (MQ=255) cATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATg < 1:404847/151‑1 (MQ=255) cATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGGGATGAGCAAtt > 1:823533/1‑150 (MQ=255) aTGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGa > 2:2126122/1‑151 (MQ=255) cgccCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAg < 1:46731/151‑1 (MQ=255) gccCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTTAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAgg < 2:2410979/151‑1 (MQ=255) cAACCATACCTTGGCGGACATACGCCTCTGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGaaaaa > 2:4502826/1‑151 (MQ=255) cAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGaaaaa < 2:1829804/151‑1 (MQ=255) cAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGaaaaa < 1:563439/151‑1 (MQ=255) aaCCATACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCAGTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGaaaaag > 1:1498644/1‑150 (MQ=255) aCCGTACCTTGGCGGACATACGCCGATGGATAGAAACGCCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATc < 2:2970650/151‑1 (MQ=255) aTACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTac < 1:3703111/151‑1 (MQ=255) tACCTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTaca < 2:3675447/151‑1 (MQ=255) ccTTGGCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACAcc > 2:3871515/1‑151 (MQ=255) ggCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAAcc > 1:3750318/1‑151 (MQ=255) gCGGACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCt < 2:2203643/151‑1 (MQ=255) ggACATACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCg < 1:2963407/151‑1 (MQ=255) aTACGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAaga > 2:3062351/1‑151 (MQ=255) cGCCTATGGATAGAACCACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTc < 2:868002/151‑1 (MQ=255) cGCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTc < 1:3443186/151‑1 (MQ=255) gCCTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCg > 1:4706194/1‑151 (MQ=255) cTATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGcc > 2:4375508/1‑151 (MQ=255) tATGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGccc > 1:4402571/1‑151 (MQ=255) tGGGTAGAAACCCCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCa < 2:1512650/151‑1 (MQ=255) tGGATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCa < 1:4029042/151‑1 (MQ=255) gATAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAgg > 1:1257381/1‑151 (MQ=255) tAGAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGcc > 1:2323886/1‑151 (MQ=255) ggagaaccTCCGGCCGCAACTGAGAGCACGCAAGTTCGGGCGAGAGGAAGTTGCGGGCCAAGTCATTCGGCTGCTAGACGGGCACATGTGGTGATGAGTAATGAGAAGGCGAAAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGccc < 2:18738/144‑1 (MQ=255) agagACACCCCTGCCTAAGCGGAGAGCACGCTATTTCCGGGGCGAGGAAGTGGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTTGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCCCGAAGAGTCGCCCCAGGccc < 2:2240251/151‑1 (MQ=255) gAAACACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCg < 1:1121391/151‑1 (MQ=255) aaCACCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCGcc > 1:1065104/1‑151 (MQ=255) acacCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCGCCt > 1:4177365/1‑151 (MQ=255) cacCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAagag > 1:1327189/1‑133 (MQ=255) cacCCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCGCCtt > 2:1115249/1‑151 (MQ=255) | CTGCCTTTGACCCTCCAGCAGCTTGAACTTGATCGGCTGCAAGCAGGCATGCACAAGCACTTTGTCCTCTCATTGGCGCATGAGGTCTTGGCCATGCCGCCCCATGCCAACCATACCTTGGCGGACATACGCCTATGGATAGAAACACTCCTGCCGCAACTGAGAGCACTCAATTTCCGGAGCGAGGAAGTTGCGGGCCAATTCATTCGGCTGCTAGCCGGGCACATGTGGTGATGAGCAATGACAAGGCGGGAAAAATCTACACCAACCTCGAAGAGTCGCCCCAGGCCCGCCTT > CP009974/5594944‑5595239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |