| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 139,240 | G→T | intergenic (+242/+57) | RPPX_00595 → / ← RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 139,240 | 0 | G | T | 98.7% | 800.2 / NA | 225 | intergenic (+242/+57) | RPPX_00595/RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (123/98); minor base C (1/2); total (125/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 225 total aligned reads displayed.
GCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTT > CP009974/139094‑139386 | gctgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCct > 1:3917079/1‑151 (MQ=255) cAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAGCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGc < 2:215214/151‑1 (MQ=255) aaTGTCCACCCGCCTCTGACCGTCCCCCCCGCTCGGGTCTCCGCGGGTAAAGCCGCTCGTACACCTATCGGGCGTGGACACACCTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGcc < 2:3220397/151‑1 (MQ=14) ggccgGTCGCCGTTTCCGCCGGTACCGTGTTCGCGGGTACGCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc < 1:5227143/150‑1 (MQ=14) cgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc > 1:2983358/1‑151 (MQ=255) cgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGGTTACCCGCTCAGAGGCCGTGCCTGCTGGCCCaccaccacc > 2:1928521/1‑151 (MQ=14) gccgTTCTCCGTTTCCGCCGCTACCGTATTCGAGGGTAAGCCCGCTCATACACCGATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAccc < 1:1398075/151‑1 (MQ=14) gcgTTCACCGTTACCGCCGCTACCGTATTCGGGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccg < 2:2817991/150‑1 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtctc > 2:497393/1‑145 (MQ=255) cgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgc < 1:3612865/151‑1 (MQ=255) gttgcccGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgcc < 1:4330838/146‑1 (MQ=255) ggtCACCGTTACGGCCGCTACCGTATTCGCGGGTAAGCCCGCTCCTACACCTATCGGGGGTGGACACACATTCGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgcc < 2:4346840/149‑1 (MQ=255) gTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGCCCAATCTCCACccgcc > 2:853527/1‑151 (MQ=255) cACGGTTCCCGCCGCTACCGTATTCGCGGGAAACCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGtt < 2:1456965/151‑1 (MQ=255) cGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAc > 2:1184528/1‑151 (MQ=255) cGTTACCGCCGCTACAGTACTCGCGGTTAAACCCGCTCCTACACCTATCGGGGGTGGACAGACATTGGTCATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAc < 1:833861/151‑1 (MQ=17) ttACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCg > 1:3704266/1‑151 (MQ=255) tACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCATTCACCGt > 1:2375121/1‑151 (MQ=255) tACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAACTATCGGGGGTAGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGt < 1:445276/151‑1 (MQ=255) aCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTa > 1:3396764/1‑151 (MQ=255) ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAg < 1:4721654/151‑1 (MQ=255) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgccg > 1:3785235/1‑151 (MQ=255) agcGTGTTCGCGGGTGAGGCCGCTCGTAGCCCTAGCGGGGGTGGACACACATTGGTGGTTGGGCGCGGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTAGCCGccacc < 2:3670388/149‑1 (MQ=17) gTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACt < 1:1449617/151‑1 (MQ=255) ttCGCGGGTAACCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCaa < 2:1873892/151‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCaa > 2:3231607/1‑151 (MQ=255) ccgcgGGTAACCCCGCTCCTACACCTAGCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCaaa < 1:1243570/150‑1 (MQ=255) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt > 1:2795643/1‑151 (MQ=255) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt > 1:3484993/1‑151 (MQ=255) gTACACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCttt < 1:2586142/151‑1 (MQ=255) gTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCCAACCCttt > 1:253234/1‑151 (MQ=255) tAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTc > 1:2925657/1‑151 (MQ=255) tAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTc > 1:4503330/1‑151 (MQ=255) tAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTc > 2:4956695/1‑151 (MQ=255) aaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaa > 1:3436053/1‑151 (MQ=255) aaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaa > 2:352681/1‑151 (MQ=255) cccggcgccTACACCCATCGGGGGTCGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaaa < 2:4822918/144‑1 (MQ=21) cGCTCCTACACCTGTCGGGAGTGGACACACATTGGTGATTGGGCGCGGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg < 1:2464796/151‑1 (MQ=255) cGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg > 1:5165721/1‑151 (MQ=255) gCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc > 1:1676383/1‑151 (MQ=255) gCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCAGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc > 2:4000025/1‑151 (MQ=255) ccTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACCCAAACCCTTTCAAAAGGcccc > 1:4110880/1‑151 (MQ=255) cTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTTGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCCCTCAAACCCTTTCCAACGGccccc > 2:2685518/1‑150 (MQ=21) agacCTATCGGGGCCGGACACACATTGGTGATTGGGCGCGGGCCGTCGTGTAGGAGCGGGTTTACCCCCGAAGAGGCCGTGCCTGCTGGCCAATCACCACCCGCCGTTCACCGTAGCCGCCACCCCTCAAACCCTTTCAAAAGGCCCCATg < 2:741733/149‑1 (MQ=18) acacCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATg > 1:1000259/1‑151 (MQ=255) tATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGACGAGGCCGTGCCTGCTGGCCCATCCCCCCCCGCCGTTCACCGTAGCCGCCACCACTCCAACCCTTTCAAAAGGCCCCATGCAccc > 2:2210154/1‑151 (MQ=21) tATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc > 2:3574248/1‑151 (MQ=255) aTCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGACTTACCCTCGAAGTGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCTACCACTCAAACCCTTTCAAAACGCCCCATGCACCCg > 2:3035804/1‑151 (MQ=21) ggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGCAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAcc > 2:2419255/1‑150 (MQ=255) ggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAcccgcccg > 1:1972485/1‑151 (MQ=255) cacacaTTGGTGTCCGGGCGTGGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCAcccc < 2:4707928/151‑1 (MQ=25) cacacaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCAcccc > 1:5063471/1‑151 (MQ=255) gccaTTGGTGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCaa < 2:1588714/149‑1 (MQ=255) cacaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCaa < 1:1184528/151‑1 (MQ=255) actcgTGATTGGCCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGaa < 2:2934744/147‑1 (MQ=255) ttGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGaaa > 1:2479879/1‑151 (MQ=255) ggTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAAtt > 1:3333786/1‑151 (MQ=255) gATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGc > 2:136078/1‑151 (MQ=255) aTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCa > 1:2031215/1‑151 (MQ=255) aTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCa > 1:384158/1‑151 (MQ=255) ttGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCaa > 2:4399007/1‑151 (MQ=255) tGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAc > 1:2705420/1‑151 (MQ=255) gggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAcc < 2:4264572/151‑1 (MQ=255) gggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAcc > 1:4559663/1‑151 (MQ=255) ggCGCGGGGCGTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc < 2:1677689/151‑1 (MQ=255) ggCGCAGGCCGTCGTGTAGGGGCGGGGTGACCCTCGAAGAGGCCGTGCCTGCTTGCCAATATCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc > 2:4477358/1‑151 (MQ=37) ggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc < 1:4057981/151‑1 (MQ=255) ggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc > 1:842768/1‑151 (MQ=255) gcAGGCCGTCGTGTAGGAGCGGGGTTTCCCGCGAGGAGGCCGTGGCTGCTGGCAAATCTACACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTCTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctct > 2:3285456/1‑151 (MQ=37) aGGCCGTCGTGTAGGCGCGGCTTGACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTc < 2:5190599/151‑1 (MQ=255) aGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTc > 1:2620089/1‑151 (MQ=255) ggCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCg > 2:1303347/1‑151 (MQ=255) ccGGCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGca < 1:2763660/151‑1 (MQ=255) gtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcaca < 1:4825602/151‑1 (MQ=255) cccgtAGGAGCGGGTTTACCCGCGAAAGGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCGCCACTCAAACCCTTTCAAAAGGCCCCACGCCCCCGCACGACCACCCCAAGAAATTCGCAACCCCCTTCGcaccac > 2:3878039/4‑151 (MQ=21) gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca > 1:2052075/1‑151 (MQ=255) gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca > 1:2387373/1‑151 (MQ=255) gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca > 1:3855901/1‑151 (MQ=255) gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca > 2:1104707/1‑151 (MQ=255) tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAg < 1:3183058/151‑1 (MQ=255) tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAg < 1:773434/151‑1 (MQ=255) tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAg > 2:1901278/1‑151 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgcg < 1:5118929/151‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgcg > 1:809215/1‑151 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgcc > 2:3602181/1‑150 (MQ=255) ggAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc > 2:908864/1‑151 (MQ=255) ggAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc < 1:3144233/151‑1 (MQ=255) gggggtgaCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGt < 2:2874223/144‑1 (MQ=255) ggTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAg > 1:1748327/1‑151 (MQ=255) gTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGt < 2:1648796/151‑1 (MQ=255) tttCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGtt < 1:4944385/151‑1 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGt < 1:2175014/151‑1 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGt > 1:1070646/1‑151 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAACCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCACGCACCCGCACGACCACCCCAAGAACTTCGCAACCCCCTTCGCACACCAGCGCCGCGCAGCTACCGt > 2:1923088/1‑151 (MQ=255) gcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTc > 1:3970612/1‑151 (MQ=255) gAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa > 1:3554785/1‑151 (MQ=255) aaGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAAt < 1:5007757/151‑1 (MQ=255) agagGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCGCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATg < 2:3787187/151‑1 (MQ=255) agGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGcc < 2:1492462/151‑1 (MQ=255) gCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCtt < 2:1432523/151‑1 (MQ=255) | GCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTT > CP009974/139094‑139386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |