| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,158,307 | G→A | intergenic (+1830/‑13453) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,158,307 | 0 | G | A | 77.5% | 651.4 / 191.3 | 361 | intergenic (+1830/‑13453) | RPPX_05120/RPPX_05130 | hypothetical protein/channel protein TolC |
| Reads supporting (aligned to +/- strand): ref base G (36/44); new base A (142/134); total (182/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Only 100 of 370 total aligned reads displayed.
CCGAAGACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAACCGGGCAG > CP009974/1158159‑1158456 | gAAGACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAactgc < 1:3110095/151‑1 (MQ=255) aaGACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAactgct > 2:439993/1‑151 (MQ=255) aaGACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAactgct < 2:2208865/151‑1 (MQ=255) gACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTgg > 2:137520/1‑151 (MQ=255) aCGGCAGCATCATCAGCGGTACCGCACCTGCAGGCACACGTGTGGAAGTGCATGACGCCAACGGCACACTGACTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGa < 2:4093914/151‑1 (MQ=14) cGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCCAC‑GGCGAACTGCTGGAc > 2:915062/1‑151 (MQ=255) cagcagcaTCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTg < 1:4583168/151‑1 (MQ=255) agcaTCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCg > 2:2288047/1‑151 (MQ=255) agcaTCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCg > 2:3539968/1‑151 (MQ=255) gcaTCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGc < 2:3032514/151‑1 (MQ=255) tCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCAGACTGATTGGCACTGTGGTGGCTGGCGCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCAt < 1:266116/151‑1 (MQ=14) tCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCAt < 1:4173543/151‑1 (MQ=255) cAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATc < 1:2031674/151‑1 (MQ=255) aGCGGTACCGCACCTGCCGGCCCCCGTGTGGAGGTTCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGGCCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCg < 2:5091718/151‑1 (MQ=11) aGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCCCC‑GGCGAACTGCTGGACGTGGTCGCCATCg > 2:3932509/1‑151 (MQ=14) aGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCg > 1:3026912/1‑151 (MQ=255) gCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCACCGa > 2:2430639/1‑151 (MQ=255) cGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGAt > 1:3730874/1‑151 (MQ=255) gTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGa < 1:4618280/151‑1 (MQ=255) aCCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGAcg > 2:2638482/1‑151 (MQ=255) cGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGAcggc > 2:2818749/1‑151 (MQ=255) gCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGAcggcg < 2:3326211/151‑1 (MQ=255) gCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGAcggcg < 2:1418247/151‑1 (MQ=255) aGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCACC‑GGCGACCTGCTGCACGTCGTCGCCACCGATGACCGCGGCGCTTcc > 1:1001965/1‑151 (MQ=11) gtgtGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATAACGGCGGCGTTTCCTCGCTGcc > 1:348338/1‑151 (MQ=255) aTGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCAc < 2:3483983/151‑1 (MQ=255) cgACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCAcc < 1:1605776/150‑1 (MQ=255) aCGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCCAC‑GGCGAACTGCTCGACGTGACCGCCATCCATGACGCCGCCGTCTCCTCGCTCCCCGCCCAGATCCCcgc > 2:4360669/1‑151 (MQ=11) gCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCgcgc > 1:3952991/1‑151 (MQ=16) cAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGccc > 1:5206608/1‑151 (MQ=255) aaCGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCg < 1:1488939/151‑1 (MQ=255) gCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACAt > 1:4094273/1‑151 (MQ=255) acacTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCa > 1:1536556/1‑151 (MQ=255) acacTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGCACGTGGCCGCCATCGATGCCGCCGGCGTTGCCTCGCTCCCCGCACAGCTTACCACACCGGACaccc > 2:3882383/1‑148 (MQ=11) acTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCAcc > 1:1375808/1‑151 (MQ=255) ttGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGcccc < 1:3268605/151‑1 (MQ=9) tGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCt < 1:3053875/151‑1 (MQ=12) gggCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCt < 2:4183810/150‑1 (MQ=255) gCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGc < 2:286688/151‑1 (MQ=255) gCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGc > 1:953202/1‑151 (MQ=9) gCACTGTGGGGGCCGGCCCCCACGGCAACCTCACCGTCACCCTCGGCCCCGGCCAGGCCCACGGGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTg < 2:525429/151‑1 (MQ=11) cGGCAGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATc > 1:603424/1‑151 (MQ=11) ggCAGCTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCTCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGATCGAACTGGTGATCa > 1:4291022/1‑151 (MQ=11) ggCAGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCa > 1:2458963/1‑151 (MQ=9) aGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATg > 1:3588929/1‑151 (MQ=14) aGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATg < 2:3266259/151‑1 (MQ=9) cTTCACCGTCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGcc < 2:1938533/151‑1 (MQ=255) ttCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCg < 1:1052140/151‑1 (MQ=12) ttCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCg < 1:1938075/151‑1 (MQ=12) tCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGa > 2:1745383/1‑151 (MQ=14) tCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGa < 1:1773785/151‑1 (MQ=255) cACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGAc > 1:2965529/1‑151 (MQ=17) cACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGAc > 1:1692548/1‑151 (MQ=9) aCCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACg < 1:2795787/151‑1 (MQ=12) aCCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACg > 1:4794629/1‑151 (MQ=9) cGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGc < 1:4951487/151‑1 (MQ=9) cGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGc < 2:4002171/151‑1 (MQ=255) gTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCa < 1:2919073/151‑1 (MQ=12) gTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCa > 1:116815/1‑151 (MQ=17) gTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCa > 1:1632550/1‑151 (MQ=12) tCACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCACCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCCCCCCTGCCGCACCGAGCGCACTGACGATCAATGCCGACGGCAg > 2:314699/1‑151 (MQ=11) gcACCGTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAg < 1:2271991/150‑1 (MQ=255) cACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGc > 2:1178684/1‑151 (MQ=9) cACCCTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGc < 1:3791130/151‑1 (MQ=9) cACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGCGCTGGTGCTCAATGCCGACGGCAGc > 2:4218393/1‑151 (MQ=11) cACCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGc > 1:3395724/1‑151 (MQ=255) aCCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGCACGTGGTCGCCATCGATGACGCCGGCGTCTCCTCGCCGGCCGCACAGATCACCGCGCCCGACATCACCGCCCCCGCCGCACCGCCCCAGCTGGTCACCACTCCCGACGGCATCg > 2:2088164/1‑151 (MQ=11) aCCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCCCCCCCCGAGCTGGTGATCAATGCCGACGGCAGCg > 2:2504820/1‑151 (MQ=11) aCCCTCGACCCGCCTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCCCCCGACATCACCGCCCCTGCCGCACCGACCCAGCTCGTGATCCATGCCCACGGCAGCg > 2:3448258/1‑151 (MQ=11) cccTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCgg > 2:4293956/1‑150 (MQ=9) ccTCGCCCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTg < 2:464799/151‑1 (MQ=12) ccTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTg < 2:704774/151‑1 (MQ=12) cTCGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTgg < 2:5136943/151‑1 (MQ=12) ccGACCCGGCCCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGt < 2:4125343/150‑1 (MQ=255) cGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTc > 1:1873176/1‑151 (MQ=17) gACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCa < 2:1044151/151‑1 (MQ=17) aCCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCAc > 1:79531/1‑151 (MQ=17) cgccgagcAGGCCAGC‑GGCGAGCGGCTGGACGTGGTCGCCATCGATGAGGGCGCCGTCTCCTCCGTGGCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCAcc < 2:4882496/144‑1 (MQ=11) cccggcccAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCAcc > 1:2188/8‑151 (MQ=12) ccggcccAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCg < 1:3196658/145‑1 (MQ=12) cGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCgg < 1:5003094/151‑1 (MQ=12) cGCCCCAGGCCAAC‑GGCGAACTACTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCgg < 1:2535802/151‑1 (MQ=9) ggcccAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGc > 1:3861556/5‑151 (MQ=9) ggcccAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGc > 2:127542/5‑151 (MQ=12) gcacaagCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATc > 1:4874665/7‑123 (MQ=11) ccTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGGGATCAATGCCGACGGCAGCGTGGTCACCGGcc > 1:708867/1‑151 (MQ=9) ccTCAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGcc < 1:3343347/151‑1 (MQ=255) cccAGGCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCg > 2:1201668/3‑151 (MQ=14) cTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCg > 2:449016/1‑151 (MQ=14) caagCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTg > 1:2159958/4‑151 (MQ=255) caagCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTg < 2:4555921/148‑1 (MQ=255) caagCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTg < 2:1636244/148‑1 (MQ=255) caagCCAAC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGCCAGCGTGGTCACCGGCCGTg > 2:2343688/4‑151 (MQ=255) aGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATTAATGCCGACGGCAGCGTGGTCACCGGCCGTGc > 1:4450124/1‑151 (MQ=14) aaC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAAc < 2:1857869/151‑1 (MQ=255) aC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAAcc < 1:2705010/151‑1 (MQ=255) aC‑GGCGAGCTGCTGGACGTGGCCGCCAGCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATGACCGCGCCCGTGATCTCCGCCCCTGCCTCACCGACTGAGCTCGTGATCAAGGCCGACGTCAGCGTGGTCGCCGGCCGTGCCGAAcc > 2:849967/1‑151 (MQ=11) aC‑GGCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCAc > 2:3693699/1‑136 (MQ=255) ggCGAACTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAACCgg > 2:1569939/1‑151 (MQ=255) gAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGACCGAGCTGGGGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAACCGGgcc > 1:4020880/1‑150 (MQ=255) | CCGAAGACGGCAGCAGCATCAGCGGTACCGCACCTGCAGGCACCCGTGTGGAAGTGCATGACGCCAACGGCACACTGATTGGCACTGTGGTGGCTGGCCCCGACGGCAGCTTCACCGTCACCCTCGACCCGCCTCAGGCCAAC‑GGCGAGCTGCTGGACGTGGTCGCCATCGATGACGGCGGCGTTTCCTCGCTGCCCGCACAGATCACCGCGCCCGACATCACCGCCCCTGCCGCACCGAGCGAACTGGTGATCAATGCCGACGGCAGCGTGGTCACCGGCCGTGCCGAACCGGGCAG > CP009974/1158159‑1158456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |