| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,358,374 | G→T | intergenic (+235/+2455) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,358,374 | 0 | G | T | 99.6% | 808.2 / NA | 273 | intergenic (+235/+2455) | RPPX_05970/RPPX_05980 | hypothetical protein/tRNA‑Thr |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (154/118); minor base A (0/1); total (154/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 276 total aligned reads displayed.
AAGCGCCAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCGGGACTGGCGGCTCCTTACGTCCGGGAGCAAGGGCATCTCATGATCTGGCCTCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATG > CP009974/1358226‑1358520 | aaGCGCCAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCtgg > 2:1189609/1‑151 (MQ=255)aaGAGCCAATTATAAATCTACTCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCtgg < 2:2891483/151‑1 (MQ=255) cgcCAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACt > 2:3966130/1‑151 (MQ=255) gcCAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTg < 1:4751440/151‑1 (MQ=255) cAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTggc < 2:1262752/151‑1 (MQ=255) aaTTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGCTCAAGGCACCTGCGCAATGTGGGAAATGTCCTCTACGCTGGACTggcg > 1:1113382/1‑151 (MQ=255) aaTTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGCAATGTCCTCTACGCTGGACTggcg > 2:5101583/1‑151 (MQ=255) aaTTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTggcg < 2:85963/151‑1 (MQ=255) tataAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCt > 2:1326282/1‑151 (MQ=255) aTCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCTTTa > 2:1987943/1‑151 (MQ=255) aTCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTa < 2:925660/151‑1 (MQ=255) cTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTACTCTACGCTGGACTGGCGGCTCCTTaag < 1:2052071/151‑3 (MQ=255) tACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTaaga > 1:1255846/1‑148 (MQ=255) cGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTaagacc > 2:1430425/1‑146 (MQ=255) cGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTaagacc < 1:3037426/151‑6 (MQ=255) gCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTaagaccg < 1:4639422/151‑7 (MQ=255) cATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCgg < 1:3575682/151‑1 (MQ=255) ttCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGa < 2:561038/151‑1 (MQ=255) ttCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGa < 2:1803961/151‑1 (MQ=255) tgcATCGCTTTCAAATATCGCAACTTCCGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATGTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGa < 2:4300719/149‑1 (MQ=255) tCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTCTTTAGTGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGGCTGGCGGCTCCTTAAGACCGGGAg > 1:5167696/1‑151 (MQ=255) aTCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCa < 1:3966130/151‑1 (MQ=255) tCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCaa < 1:4311086/151‑1 (MQ=255) tCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCaa < 1:2805718/151‑1 (MQ=255) gCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAgg < 1:2836750/151‑1 (MQ=255) gCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAgg < 2:1700455/151‑1 (MQ=255) tttCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGc < 1:1882593/151‑1 (MQ=255) tttCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGc > 2:516264/1‑151 (MQ=255) ttCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCa > 2:3383854/1‑151 (MQ=255) tCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCGTAAGACCGGGAGCAAGGGCaa > 2:1097671/1‑150 (MQ=255) aaaTATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCAtct < 1:4060013/151‑1 (MQ=255) atatCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCa > 1:4947476/1‑151 (MQ=255) tatCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCAt > 2:2443/1‑151 (MQ=255) atCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATg < 1:3691087/151‑1 (MQ=255) gCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATc < 2:4215750/151‑1 (MQ=255) cAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCt < 2:2227527/151‑1 (MQ=255) aaCTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTg < 2:686164/151‑1 (MQ=255) aCTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTgg > 1:4433509/1‑151 (MQ=255) tccAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGct > 2:2287593/3‑150 (MQ=255) cactGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTg < 2:4469305/148‑1 (MQ=25) cATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTACGACCGGGAGCAAGGGCATCTCCTGACCCGGCTCCCTg > 2:4955672/1‑151 (MQ=38) aTTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGctccctga > 1:4614604/1‑144 (MQ=25) aTTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCGCCCTGa > 1:579379/1‑151 (MQ=255) tGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGc < 1:4003531/151‑1 (MQ=25) aGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAc > 1:3827046/1‑151 (MQ=25) aGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAc < 2:233811/151‑1 (MQ=25) aGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAc < 1:3750178/151‑1 (MQ=25) cAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGt > 1:1463376/1‑151 (MQ=21) cAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGt > 1:2308346/1‑151 (MQ=21) cAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGt > 1:5126176/1‑151 (MQ=21) aaTGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCATCTACGCTGGACTGGCGGCTCCTGAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACAGtt > 1:2917391/1‑151 (MQ=21) aGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCg > 2:4038487/1‑151 (MQ=21) cctccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTgg > 1:1166028/1‑151 (MQ=21) cctccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTgg > 2:4777819/1‑151 (MQ=21) cctccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTgg > 1:1580716/1‑151 (MQ=21) cctccCAAGATCTAGTCCTAGCACAGACCTTATTTACGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTgg < 2:3255565/151‑1 (MQ=21) tccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGc > 2:2774002/1‑151 (MQ=21) cccAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCg < 2:3268433/151‑1 (MQ=21) cAAGATCTAGTGCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCggg < 2:4545651/151‑1 (MQ=18) gATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTgg > 1:1775301/1‑151 (MQ=18) aTCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGa < 2:3559536/151‑1 (MQ=18) tCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAg > 1:4072687/1‑151 (MQ=18) tAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGc > 1:2168677/1‑151 (MQ=18) gTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTg < 1:2543211/151‑1 (MQ=18) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGTGCATCTCATGATCTGGCTCACTGAGCACCGTTACCGGGTGGCGGGCGGAGGCAGc > 2:3702286/1‑151 (MQ=255) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGCTCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGCGGAGGCTGc > 2:2692073/1‑151 (MQ=18) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGc > 2:63968/1‑151 (MQ=18) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGAGGAGGCTGc > 1:1362894/1‑151 (MQ=18) ccTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCa < 2:4142864/151‑1 (MQ=18) ccTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCa < 2:1775301/151‑1 (MQ=18) cTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCAt > 1:3099969/1‑151 (MQ=17) tAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCAtt < 1:4899767/151‑1 (MQ=18) aGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTg > 2:1394666/1‑151 (MQ=17) aGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGa > 2:1164435/1‑151 (MQ=17) gACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGAc < 1:1024914/151‑1 (MQ=17) gACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGAc > 1:4816697/1‑151 (MQ=17) tAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGt < 1:2502242/151‑1 (MQ=17) ggATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGcc < 2:4651726/151‑1 (MQ=17) tCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCAGGACTGGCGGCTCCTTCAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGCGACCAGTGCcgcg < 2:2217597/151‑1 (MQ=14) cAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCga < 1:3509947/151‑1 (MQ=17) aaGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCgag > 2:2812239/1‑151 (MQ=17) aaGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCgag > 1:642667/1‑151 (MQ=17) aCCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGGCGAGACCAGTGCCGCGAGATCCt > 2:5042960/1‑151 (MQ=14) aCCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCt > 1:2359284/1‑151 (MQ=17) aCCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCt > 1:725554/1‑151 (MQ=17) tGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAg > 1:800262/1‑151 (MQ=14) tGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAg < 1:525520/151‑1 (MQ=14) cGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGcc > 2:2554856/1‑151 (MQ=14) gACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCg < 1:3920495/151‑1 (MQ=14) gACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCg < 1:120392/151‑1 (MQ=14) aTGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGt > 1:2678239/1‑151 (MQ=14) tgtgGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtg < 1:967569/151‑1 (MQ=14) gtgGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgc < 2:3911480/151‑1 (MQ=14) ggAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgcatg > 1:324270/1‑151 (MQ=14) aaaTGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgcatgca > 1:3317908/1‑151 (MQ=14) aTGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATgcagc < 2:1287830/151‑1 (MQ=14) tGTCCTCTACGCTGCACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCGCCCAGAGCACCGTTACAGGTGGGCGGGTCGAGGATGCATTGGCTTACGAAACCAGTGCCCAGAGAGTCTGTTCTGGGtgcatctaggc > 2:3715679/1‑145 (MQ=2) ccTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTg > 2:2966980/1‑151 (MQ=14) ctctACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGc < 1:3397757/151‑1 (MQ=17) aCGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATg > 2:1594291/1‑151 (MQ=14) | AAGCGCCAATTATAAATCTACGCATTCATCGCTTTCAAATATCGCAACTTCAGCATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCGGGACTGGCGGCTCCTTACGTCCGGGAGCAAGGGCATCTCATGATCTGGCCTCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATG > CP009974/1358226‑1358520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |