Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 1,449,631 T→C intergenic (+144/‑45) RPPX_06395 → / → RPPX_06400 chemotaxis protein/thiol:disulfide interchange protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,449,6310TC100.0% 1089.6 / NA 307intergenic (+144/‑45)RPPX_06395/RPPX_06400chemotaxis protein/thiol:disulfide interchange protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (165/142);  total (165/142)

Only 100 of 309 total aligned reads displayed.

CTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGTGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGC  >  CP009974/1449484‑1449778
                                                                                                                                                   |                                                                                                                                                   
cTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCa                                                                                                                                                  <  1:4742757/151‑1 (MQ=255)
cTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGCTTCGGGCCAATTATTCCTgcgcc                                                                                                                                                  >  2:3120961/1‑150 (MQ=255)
cTGAGTCGGCGAGTGGTCGCCAGGACAGGTGTAGCAACTGAAGATGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCACTTATTCCTgcgcc                                                                                                                                                  >  1:3935963/1‑150 (MQ=255)
 tgggTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCAt                                                                                                                                                 <  2:3185873/148‑1 (MQ=255)
       ggcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTa                                                                                                                                           <  1:2845876/151‑1 (MQ=255)
        gcggGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTAt                                                                                                                                          <  1:2445047/151‑1 (MQ=255)
          gggTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCa                                                                                                                                        >  2:1962787/1‑151 (MQ=255)
          gggTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCa                                                                                                                                        <  2:1966268/151‑1 (MQ=255)
           ggtggtCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCAt                                                                                                                                       <  2:25669/151‑1 (MQ=255)
             gggtCTCCAGGACAGGTGTAGCGACTGAAGAGGGTTTGCCGTGATATGTGTTGAGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGc                                                                                                                                     <  1:1526140/150‑1 (MQ=25)
               gtCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGGTCTCATggcc                                                                                                                                   >  1:2979717/1‑148 (MQ=255)
                 cggcAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCggg                                                                                                                                 <  1:3306285/148‑1 (MQ=255)
                    cAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGcgc                                                                                                                              >  1:2699435/1‑149 (MQ=255)
                    cAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCAc                                                                                                                              >  1:3843658/1‑151 (MQ=255)
                    cAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCAc                                                                                                                              <  1:3175065/151‑1 (MQ=255)
                       gACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGtt                                                                                                                           >  2:2840048/1‑151 (MQ=255)
                        aCAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTc                                                                                                                          >  1:43437/1‑151 (MQ=255)
                         cAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTTTTCCTGCGCATCCGTTATCATGCCGGGCACGTTcc                                                                                                                         >  1:2090433/1‑151 (MQ=255)
                         cAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTcc                                                                                                                         >  1:3808593/1‑151 (MQ=255)
                          aGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTccc                                                                                                                        >  1:1382595/1‑150 (MQ=255)
                            gtgtAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCAcc                                                                                                                      >  2:4922903/1‑151 (MQ=255)
                             ggtAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCt                                                                                                                     <  2:1571934/150‑1 (MQ=255)
                               tAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCCCGTTCCCCCTcc                                                                                                                   >  1:4879339/1‑150 (MQ=255)
                                  cAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGa                                                                                                                <  1:1203155/151‑1 (MQ=255)
                                   aaCTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAg                                                                                                               >  1:677843/1‑151 (MQ=255)
                                    aCTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGt                                                                                                              <  1:2320265/151‑1 (MQ=255)
                                      ggAAGGGGGGTTGGCGTGATGTGTGGTGCGTCTGGGAGAGCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCGCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTcc                                                                                                            <  2:4827600/150‑1 (MQ=25)
                                       gAAGAGGGTTGGACGTGATATGTGTTGTGTCCGGGAGATCGCGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCg                                                                                                           <  2:3542378/151‑1 (MQ=255)
                                        aaGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGc                                                                                                          >  2:1288553/1‑151 (MQ=255)
                                         agagGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGcc                                                                                                         <  1:4589579/151‑1 (MQ=255)
                                           gggttttGACGTGATATGTGTCGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCAt                                                                                                       <  2:2275403/147‑1 (MQ=255)
                                           agGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCAt                                                                                                       >  1:1965970/1‑151 (MQ=255)
                                              gTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATgcg                                                                                                    <  1:1113928/151‑1 (MQ=255)
                                                 tGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTCTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTCCCACCTCGCGAGTCCTCCATCcgccc                                                                                                 >  2:4078110/1‑150 (MQ=25)
                                                  gACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGcgccgc                                                                                                <  1:3507615/151‑1 (MQ=255)
                                                  gACGTGATATGGGGTGCGTCTGGGAGAGGGAGCGCGGGCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCGCCTCGCGAGTCCGCCATGcgccgc                                                                                                <  2:4704753/151‑1 (MQ=25)
                                                   aCGTGATATGTGTTGCGTCTGGGAGCTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCCGGCCAATTCTTCCTGCGCCTCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGCCCGCACTGCgccccc                                                                                               >  2:2016916/1‑151 (MQ=25)
                                                   aCGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCgccgcc                                                                                               >  2:3911454/1‑151 (MQ=255)
                                                   aCGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCgccgcc                                                                                               <  2:5176902/151‑1 (MQ=255)
                                                     gTGCTATGTGGTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTg                                                                                             <  2:4004619/151‑1 (MQ=255)
                                                     gTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTCTCGGGCCAATTATTCCTGCGCATCCGTTATCACGCCGGGCACGTTCCACCTCGCGAGTCCGCCCTGCGCCGCCTg                                                                                             >  1:4475105/1‑151 (MQ=255)
                                                      tGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCCTGCGCCGCCTGt                                                                                            >  1:93824/1‑151 (MQ=255)
                                                      tGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGt                                                                                            >  1:847181/1‑151 (MQ=255)
                                                         tatGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGtttt                                                                                         <  1:4382034/151‑1 (MQ=255)
                                                              gtTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGGCCGCCATGCGCCGCCTGTTTTTcctc                                                                                    >  1:4268184/1‑148 (MQ=255)
                                                               ttGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGc                                                                                   >  1:5086763/1‑151 (MQ=255)
                                                                tGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGCGTCCGCCATGCGCCGCCTGTTTTTCATGCt                                                                                  >  1:173989/1‑151 (MQ=255)
                                                                  cGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGt                                                                                <  2:3685693/151‑1 (MQ=255)
                                                                  cGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGt                                                                                >  1:2460797/1‑151 (MQ=255)
                                                                   gTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCTGGGCACGTTCCACCTCGCGAGTCCGCGATGCGCCGTCTGTTTTTTATgttgtt                                                                               >  2:374002/1‑151 (MQ=25)
                                                                   gTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCCTGCGCCGCCTGTTTTTCCTGCTGtt                                                                               >  1:986055/1‑151 (MQ=255)
                                                                   gTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGtt                                                                               <  2:1044748/151‑1 (MQ=255)
                                                                   gTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGtt                                                                               >  1:3297141/1‑151 (MQ=255)
                                                                     cTGGGAGATCGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTcc                                                                             <  2:4490367/151‑1 (MQ=255)
                                                                     cTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCCTGCGCCGCCTGTGTTTCCTGCTGTTcc                                                                             >  1:346633/1‑151 (MQ=255)
                                                                          agaTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCTGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctg                                                                        >  2:4597241/1‑151 (MQ=255)
                                                                          agaTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCCCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctg                                                                        >  2:4006267/1‑151 (MQ=255)
                                                                           gaTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctgc                                                                       >  1:2751778/1‑151 (MQ=255)
                                                                            aTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCctgctgct                                                                      <  1:3340654/151‑1 (MQ=255)
                                                                              cGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCCGTTTTTCATGCTGTTCCTGCTGCTgg                                                                    >  2:1399530/1‑151 (MQ=255)
                                                                                 gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCa                                                                 <  2:502686/151‑1 (MQ=255)
                                                                                      gcccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCt                                                            >  2:1318710/1‑151 (MQ=255)
                                                                                      gcccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCt                                                            <  1:1182841/151‑1 (MQ=255)
                                                                                       cccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGcccgg                                                           >  1:1878988/1‑149 (MQ=255)
                                                                                        ccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGc                                                          <  2:1646795/151‑1 (MQ=255)
                                                                                          gggtggcgTTTGGCGGGTAAGCCGGCTCCTACGTTTGGTTCGGGCCAAGTATGCCGGCGCATCCGTTATCATGCGGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGGCAGCCCTGCCt                                                        <  2:1744380/147‑1 (MQ=255)
                                                                                           cgcgGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTCGCCCGCCCTGCCtc                                                       >  1:5045910/1‑150 (MQ=255)
                                                                                              ggcgCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgc                                                    >  1:1689750/1‑151 (MQ=255)
                                                                                               gggcTTGGGGGGTAGTCCCGCTCCTGCGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgcc                                                   <  2:2980790/149‑1 (MQ=255)
                                                                                               gcgcTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgcc                                                   <  2:642861/151‑1 (MQ=255)
                                                                                                cgcTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgccg                                                  >  2:2437509/1‑151 (MQ=255)
                                                                                                cgcTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTcgccg                                                  <  1:1303625/151‑1 (MQ=255)
                                                                                                   ttCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAg                                               <  1:3599866/151‑1 (MQ=255)
                                                                                                      gcgGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGcc                                            >  1:2633789/1‑151 (MQ=255)
                                                                                                         ggTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGc                                         >  2:1085703/1‑151 (MQ=255)
                                                                                                            aaaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCg                                      <  2:943886/151‑1 (MQ=255)
                                                                                                            aaaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCg                                      >  2:218974/1‑151 (MQ=255)
                                                                                                             aaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCCCGa                                     >  2:1468502/1‑151 (MQ=255)
                                                                                                             aaCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTCCGCCGCAGGCCTGCTCgc                                     >  2:3310470/1‑150 (MQ=255)
                                                                                                                 cGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTCGCCAGCCCTGCCGTCGCCGCAGCCCTGCTCCGCAAc                                 >  2:4290424/1‑151 (MQ=255)
                                                                                                                        aCGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCa                          <  1:100545/151‑1 (MQ=255)
                                                                                                                        aCGTTTGTTTCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCa                          >  1:1470838/1‑151 (MQ=255)
                                                                                                                           tttgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCCGCTGGCCAGCCCTGCCTTCTCCGCACTCCTCCTCGCCACCCGCCCCaccc                       >  2:5012664/1‑148 (MQ=255)
                                                                                                                            ttgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATTCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAgcgc                      >  1:2164499/1‑151 (MQ=255)
                                                                                                                             tgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGcc                     >  1:233310/1‑151 (MQ=255)
                                                                                                                             tgtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGcc                     >  1:541411/1‑151 (MQ=255)
                                                                                                                              gtttCGGGCCAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCa                    <  1:3055086/151‑1 (MQ=255)
                                                                                                                                   gggCGAATTCTTCCTGCGCATTCGTTAGCATGCCGGGGAGGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGGTTTTCATGCTGTTCCTGCTGCTGTCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCtt               <  2:2925961/151‑1 (MQ=255)
                                                                                                                                       cAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGgcg           >  2:1696606/1‑151 (MQ=255)
                                                                                                                                       cAATTATTCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGgcc           >  2:3365939/1‑150 (MQ=255)
                                                                                                                                         attattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGcgcc         >  2:568936/1‑151 (MQ=255)
                                                                                                                                         attattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGcgcc         >  1:1577282/1‑151 (MQ=255)
                                                                                                                                          ttattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGcgccg        <  1:2276950/151‑1 (MQ=255)
                                                                                                                                          ttattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGcgccg        <  1:3373526/151‑1 (MQ=255)
                                                                                                                                           tattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGgc            >  1:1222732/1‑146 (MQ=255)
                                                                                                                                           tattCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGgc            <  2:1220913/146‑1 (MQ=255)
                                                                                                                                            attCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCt      <  1:417667/151‑1 (MQ=255)
                                                                                                                                              tCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCCGCGCGACAACCGCCCCCGCGCCACCCTTAGccccccccc    >  2:3266025/1‑146 (MQ=255)
                                                                                                                                              tCCTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGGCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTc    <  2:3808593/151‑1 (MQ=255)
                                                                                                                                                cTGCGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGc  >  2:3042295/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CTGAGTCGGCGGGTGGTCGCCAGGACAGGTGTAGCAACTGAAGAGGGTTTGACGTGATATGTGTTGCGTCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGTGCATCCGTTATCATGCCGGGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCATGCTGTTCCTGCTGCTGGCCAGCCCTGCCTTCGCCGCAGGCCTGCTCGACAACCGCCCCAGCGCCACCCTTGGCGCCGCTTCGC  >  CP009974/1449484‑1449778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑