| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,490,016 | G→A | intergenic (+31/‑317) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,490,016 | 0 | G | A | 78.5% | 695.9 / 139.7 | 316 | intergenic (+31/‑317) | RPPX_06570/RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base G (35/32); new base A (98/147); total (134/182) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.39e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.91e-03 | |||||||||||
Only 100 of 329 total aligned reads displayed.
GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 | cTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacgg < 1:1067883/151‑1 (MQ=255) tGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacggc > 2:829386/1‑150 (MQ=255) tGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacggc > 1:1861248/1‑150 (MQ=255) cGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTg < 1:2375657/151‑1 (MQ=255) ggATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgc > 2:5001478/1‑151 (MQ=255) atCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc > 2:4553031/1‑151 (MQ=255) atCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc > 2:3501120/1‑151 (MQ=255) tATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCgct > 2:4790948/1‑149 (MQ=255) tATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGAt > 1:1358866/1‑151 (MQ=255) tATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGAt > 1:5063989/1‑151 (MQ=255) tATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGCCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGAt > 1:3931556/1‑151 (MQ=255) tCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAcc > 2:3984317/1‑151 (MQ=255) cGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCACTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAccc > 1:4051842/1‑150 (MQ=255) gAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGa < 1:1706049/151‑1 (MQ=255) gCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtg < 2:4048649/151‑1 (MQ=255) gCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAtgtgtg < 1:2433563/151‑1 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 2:4929278/151‑1 (MQ=255) aGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCa < 1:1432320/151‑1 (MQ=255) cTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTg < 1:4608788/151‑1 (MQ=255) tGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGCTGTGTGacccccgt > 2:3218182/1‑146 (MQ=38) gagtGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCGTCGGTGACGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAg < 1:4171191/148‑1 (MQ=37) aaaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAg < 1:2752942/151‑1 (MQ=255) aaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGc < 1:2872429/151‑1 (MQ=255) gctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt < 2:2145850/151‑2 (MQ=255) gctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt > 1:4716844/1‑150 (MQ=255) tggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGGTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGttt < 1:4848178/151‑1 (MQ=255) ggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGTCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGtttt < 2:4586382/151‑1 (MQ=255) gctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTa < 2:1193475/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAccc > 1:4828463/1‑151 (MQ=255) aGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGAGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCTACTGTAGGAGCGGTTTTACCcg < 2:4647006/151‑1 (MQ=37) gTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCcgc < 1:4245018/151‑1 (MQ=255) gTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGACCACCCATGCGTGCCCACCCCAGGAGCGGCTTTAcccct > 2:1062573/1‑149 (MQ=37) tGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCcgcg < 1:1154167/151‑1 (MQ=255) gCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGa > 1:2923458/1‑151 (MQ=255) ggCTGGATGCAGCCGGGTTCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATa < 1:3571614/151‑1 (MQ=255) gCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATAc > 1:4983717/1‑151 (MQ=255) tGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGa < 1:3739944/151‑1 (MQ=255) tGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTCCGCCCGATCACCGCTGCGTGCCCACTGGAGGAGCGGCTTTACCCTCGAAAACGa > 1:4639207/1‑151 (MQ=37) ggATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCCCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGAt > 1:4218767/1‑151 (MQ=255) gATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATa > 1:718627/1‑151 (MQ=255) aGCCGGGATCGAGGCTTCGGTGAGGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGCCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggc < 1:3027922/151‑1 (MQ=255) aGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggc < 1:3330202/151‑1 (MQ=255) gCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcg < 2:2417050/151‑1 (MQ=255) ccGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcgg < 2:4695299/151‑1 (MQ=255) cGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCCCCGTAGGAGCGGGTTTGTCCGGGAAAACGAGAgcggcggg > 2:423947/1‑150 (MQ=21) ggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGa < 1:1114888/151‑1 (MQ=255) ggAGCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGa < 2:2683344/151‑1 (MQ=255) gATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGAc < 1:3500040/151‑1 (MQ=255) aTCAAGGCTTCGGTGAAGTCGCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACg < 1:1486700/151‑1 (MQ=18) tCGAGGCTTCGGTGAAGGCTCGCATGGCCCGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACgg < 1:895890/151‑1 (MQ=255) tCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGGACCCCGATGGGGGCGCGCTGTGGGAGCGGGTTGACCCCCGAAGACGCCAGCGCCGGAGACgg > 2:5209026/1‑151 (MQ=25) gAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGACGTGTGCCCACAGTCGGAGCGGCTTTACCCGCGAATACGATAGCGGCGGACACGGTg > 2:1918762/1‑151 (MQ=21) aGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGa < 1:2093969/151‑1 (MQ=255) gcgtCGGTGAGGGCTCGGTGAGCCGTGGTCGGGCGCTCGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAAc < 2:5063989/148‑1 (MQ=14) cTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAcg < 2:2276174/151‑1 (MQ=255) gTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCggg > 2:1499856/1‑151 (MQ=255) aaGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGa > 1:3304045/1‑151 (MQ=255) aaGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGa > 1:2041361/1‑151 (MQ=255) tCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAAtt < 2:2866154/151‑1 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc > 1:2311415/1‑151 (MQ=255) aTGGCCAGGCTCGGGCACTAGGGCGCTTTCGAGGGTAAACCCGCTCCTACGACGGCCTGCGACCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc < 1:3222834/151‑1 (MQ=17) tGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCca < 1:3823723/151‑1 (MQ=255) tGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCca < 1:5159122/151‑1 (MQ=255) ggcgcggCTCGGACGCCGGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCTCGCTGTAGGCGCGGTTTTGCCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAACTTGGCcag < 2:1581126/146‑1 (MQ=11) aGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCcagcagg < 2:3324491/151‑2 (MQ=14) aGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCagcagc < 1:4555527/151‑1 (MQ=255) ggCTCGGGCTCTAGGGCGCGTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGcc < 2:710007/151‑1 (MQ=255) cTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGcccc < 1:927649/151‑1 (MQ=255) cGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCgg < 2:3863149/151‑1 (MQ=255) gggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATGCGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGc > 1:3992654/1‑151 (MQ=255) gCTCTGGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGccc < 1:615046/151‑1 (MQ=255) gCTCTAGGGCGCTTTCGCGGGTAACCCCGCTCCTACGACGGCCGGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGccc < 2:5093506/151‑1 (MQ=14) gCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGAtgt > 2:2316152/1‑62 (MQ=255) gCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGccc > 1:5238450/1‑151 (MQ=255) gCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAggcccggccc > 1:2206850/1‑151 (MQ=255) tAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTc < 1:1750634/151‑1 (MQ=255) aGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAc > 2:2050710/1‑82 (MQ=255) aGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTcg < 2:440096/151‑1 (MQ=255) ggCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCGGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCCGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTcgcg < 2:2631823/151‑1 (MQ=11) cTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATc < 1:4517155/43‑1 (MQ=38) cTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGAtgtgtg > 2:3591944/1‑54 (MQ=38) tCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggg < 2:1720664/68‑1 (MQ=37) cgGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAAcccc > 2:3416106/1‑150 (MQ=11) gggTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc < 1:3774782/101‑1 (MQ=32) gggTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATAc > 1:1338709/1‑79 (MQ=255) ggTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCt < 1:1016917/151‑1 (MQ=255) tAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGa > 2:1424626/1‑96 (MQ=11) aaaCCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGCGCGGGTTTACCCGCGAATACGCTAGCGGCGACCGCTGTGAACTGCGGGTGCAAATTGGCCTGCACGCCCGCCCCTCTCGCGGGTCAACCCGCTCCt > 2:4192422/1‑151 (MQ=11) aaaCCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGAt < 2:651983/78‑1 (MQ=31) aaCCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCt > 2:107965/1‑147 (MQ=11) ccccGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAc < 2:3001866/150‑1 (MQ=255) gCTCCTACGACGGCCTGCGCCCGATCACCGATGTGCGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggcg < 2:2582124/151‑1 (MQ=255) tCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGCAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGGGAACCCGCCCCTAcggcggc > 2:297870/1‑150 (MQ=11) ccTACGGCGGGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGc > 1:2486796/1‑151 (MQ=2) cTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggtgtccc > 2:3769980/1‑145 (MQ=11) cTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCt < 1:4767869/151‑1 (MQ=255) acgacgGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgc < 2:1358866/151‑1 (MQ=255) aCGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTgc < 1:1521652/151‑1 (MQ=11) ggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAGACCCGCTCCTACGGCGGGCTgcgc > 1:1288194/1‑151 (MQ=11) ggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGCCGgcgc > 2:1337023/1‑151 (MQ=11) | GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |