Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 1,562,838 T→C N45S (AAC→AGC)  RPPX_06985 ← DNA‑directed RNA polymerase subunit beta'

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,562,8380TC100.0% 899.8 / NA 248N45S (AAC→AGC) RPPX_06985DNA‑directed RNA polymerase subunit beta'
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (117/131);  total (117/131)

Only 100 of 248 total aligned reads displayed.

CAGGGCAACTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGTTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGCCTTTCCTCCTG  >  CP009974/1562690‑1562985
                                                                                                                                                    |                                                                                                                                                   
cAGGGCAACTTCAACGCCGCGCTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTg                                                                                                                                                   <  1:1901040/151‑1 (MQ=255)
 aGGGCAACTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGa                                                                                                                                                  >  1:1594194/1‑151 (MQ=255)
  gggCAACTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGAt                                                                                                                                                 <  1:4795739/151‑1 (MQ=255)
  gggCAACTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGAt                                                                                                                                                 <  1:3979983/151‑1 (MQ=255)
      aaCTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGtt                                                                                                                                             >  2:2308744/1‑151 (MQ=255)
       aCTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGttt                                                                                                                                            <  1:2004975/151‑1 (MQ=255)
         ttCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTcc                                                                                                                                          >  1:3951457/1‑151 (MQ=255)
               gccgcACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTCGTCCCTGACTGGGCCAACGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGCACGCACGCTACCTGATGGTTTCCCGcttc                                                                                                                                    >  2:4958545/1‑151 (MQ=255)
                ccgcACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGcttct                                                                                                                                   >  1:3514132/1‑151 (MQ=255)
                  gcACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTa                                                                                                                                 <  1:856573/151‑1 (MQ=255)
                  gcACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTa                                                                                                                                 <  2:2046812/151‑1 (MQ=255)
                     cTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACt                                                                                                                              <  1:3541600/151‑1 (MQ=255)
                      ttCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACtt                                                                                                                             <  1:3256158/151‑1 (MQ=255)
                       tctcGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTc                                                                                                                            <  2:1448206/151‑1 (MQ=255)
                        ctcGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCa                                                                                                                           <  2:3425732/151‑1 (MQ=255)
                          cGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCAcc                                                                                                                         <  1:245343/151‑1 (MQ=255)
                           gCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCg                                                                                                                        <  2:2552445/151‑1 (MQ=255)
                            cAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGa                                                                                                                       <  1:2796818/151‑1 (MQ=255)
                             aGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGaa                                                                                                                      >  1:4152319/1‑151 (MQ=255)
                             aGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGaa                                                                                                                      <  2:381241/151‑1 (MQ=255)
                               aTTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACg                                                                                                                    >  1:4094326/1‑151 (MQ=255)
                                   cgccgcGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCa                                                                                                                <  1:3734419/151‑1 (MQ=255)
                                   cgccgcGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCa                                                                                                                <  2:1862182/151‑1 (MQ=255)
                                    gccgcGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCCCCGAACGACCAc                                                                                                               >  2:2831241/1‑151 (MQ=255)
                                    gccgcGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCAc                                                                                                               <  1:1477021/151‑1 (MQ=255)
                                     ccgcGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACg                                                                                                              >  1:111395/1‑151 (MQ=255)
                                       gcgGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGaa                                                                                                            >  2:2979415/1‑151 (MQ=255)
                                       gcgGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGaa                                                                                                            >  1:4908325/1‑151 (MQ=255)
                                          gTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGCACGTACGCTAGCTGATGGTTCCCGGCTTCTTAACCTCACCGAACGACCACGAACgc                                                                                                         >  2:3999757/1‑150 (MQ=255)
                                           tGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGa                                                                                                        <  2:1152659/151‑1 (MQ=255)
                                             cTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATc                                                                                                      >  1:2695167/1‑151 (MQ=255)
                                              ttGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCa                                                                                                     >  1:4965410/1‑151 (MQ=255)
                                                gAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCAtt                                                                                                   >  1:755834/1‑151 (MQ=255)
                                                   gcgcTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCa                                                                                                <  2:2683897/151‑1 (MQ=255)
                                                    cgcTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAg                                                                                               >  1:1892204/1‑151 (MQ=255)
                                                     gcTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAgg                                                                                              >  1:430998/1‑151 (MQ=255)
                                                       ttGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCg                                                                                            <  1:1825737/151‑1 (MQ=255)
                                                         gTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGAc                                                                                          <  1:300389/151‑1 (MQ=255)
                                                             ttGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCa                                                                                      <  1:2531400/151‑1 (MQ=255)
                                                               gCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGa                                                                                    <  2:1267437/151‑1 (MQ=255)
                                                               gCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGa                                                                                    >  1:1073424/1‑151 (MQ=255)
                                                               gCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGa                                                                                    <  1:1255073/151‑1 (MQ=255)
                                                                ccGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGAc                                                                                   <  2:595132/151‑1 (MQ=255)
                                                                 cGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGAcc                                                                                  <  1:4002022/151‑1 (MQ=255)
                                                                  gCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGCCCACGAACGGATCATTTCAGGCGACGCCAGACCg                                                                                 >  2:4730571/1‑151 (MQ=255)
                                                                   cacaGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGa                                                                                <  1:934004/151‑1 (MQ=255)
                                                                    acaGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGAt                                                                               <  2:3164620/151‑1 (MQ=255)
                                                                      aGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTCACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGc                                                                             >  2:3280247/1‑151 (MQ=255)
                                                                        gCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCgg                                                                           <  2:1371166/151‑1 (MQ=255)
                                                                         cACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGa                                                                          <  2:2412296/151‑1 (MQ=255)
                                                                          aCTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGAt                                                                         >  2:1587575/1‑151 (MQ=255)
                                                                           cTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATg                                                                        <  2:228216/151‑1 (MQ=255)
                                                                            tCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATgg                                                                       <  2:486573/151‑1 (MQ=255)
                                                                             cGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGc                                                                      <  1:123200/151‑1 (MQ=255)
                                                                              gTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGATCGATGCGGATGGCg                                                                     >  2:3534888/1‑151 (MQ=255)
                                                                              gTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCg                                                                     >  1:1167620/1‑151 (MQ=255)
                                                                              gTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCg                                                                     >  2:2900997/1‑151 (MQ=255)
                                                                                aGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCAGCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTc                                                                   >  1:3072017/1‑151 (MQ=255)
                                                                                aGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTc                                                                   >  1:5102583/1‑151 (MQ=255)
                                                                                aGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTc                                                                   <  2:4437270/151‑1 (MQ=255)
                                                                                  tCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGa                                                                 >  1:3375744/1‑151 (MQ=255)
                                                                                         cTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTc                                                          <  2:829450/151‑1 (MQ=255)
                                                                                          tGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGCACTCTTCg                                                         >  2:3097115/1‑151 (MQ=255)
                                                                                           gggCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGa                                                        >  2:2785246/1‑151 (MQ=255)
                                                                                               cAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGAGAGCTGATGGTTTCGGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTg                                                    <  2:5015483/151‑1 (MQ=255)
                                                                                                aaaGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGa                                                   <  2:2402352/151‑1 (MQ=255)
                                                                                                     tCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTg                                              >  2:2186290/1‑151 (MQ=255)
                                                                                                     tCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTg                                              >  2:4842851/1‑151 (MQ=255)
                                                                                                     tCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTg                                              <  1:5058726/151‑1 (MQ=255)
                                                                                                     tCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTg                                              <  1:1338225/151‑1 (MQ=255)
                                                                                                      cTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTgg                                             >  1:4708722/1‑151 (MQ=255)
                                                                                                      cTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTgg                                             >  1:4944538/1‑151 (MQ=255)
                                                                                                      cTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATCTCAGGCGACGCCAGACCGATACGCATGGCGTCGAACTCATAGACTTGACCCTgg                                             >  2:4486035/1‑151 (MQ=255)
                                                                                                       ttGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGGACGGGTCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGt                                            <  2:435049/151‑1 (MQ=255)
                                                                                                          gcgcAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGtttt                                         <  1:3829673/151‑1 (MQ=255)
                                                                                                             gacaaCAGGCCGTCACGCTCAGGCTTGAACGTGCGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCa                                      <  2:3186795/148‑1 (MQ=255)
                                                                                                             cAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCa                                      >  1:5190530/1‑151 (MQ=255)
                                                                                                              aGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAg                                     <  1:1789604/151‑1 (MQ=255)
                                                                                                              aGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAg                                     >  2:1624564/1‑151 (MQ=255)
                                                                                                              aGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAg                                     >  1:1264385/1‑151 (MQ=255)
                                                                                                              aGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAg                                     >  2:4222002/1‑151 (MQ=255)
                                                                                                               gAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGc                                    >  2:220161/1‑151 (MQ=255)
                                                                                                                aaCAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCa                                   >  1:1010855/1‑151 (MQ=255)
                                                                                                                 aCAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCaa                                  >  1:271402/1‑151 (MQ=255)
                                                                                                                 aCAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCaa                                  >  1:3187841/1‑151 (MQ=255)
                                                                                                                  cAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCaaa                                 <  1:2878029/151‑1 (MQ=255)
                                                                                                                     gCCGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTc                              >  2:1625320/1‑151 (MQ=255)
                                                                                                                      ccGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCa                             <  2:5143572/151‑1 (MQ=255)
                                                                                                                       cGTCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCTAATTCAg                            >  2:3214453/1‑151 (MQ=255)
                                                                                                                         tCACGCTCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTa                          <  2:4820505/151‑1 (MQ=255)
                                                                                                                               tCAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCtt                    >  2:4713615/1‑151 (MQ=255)
                                                                                                                                cAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCttt                   <  1:5165532/151‑1 (MQ=255)
                                                                                                                                cAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCttt                   >  2:67759/1‑151 (MQ=255)
                                                                                                                                cAGGCTTGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCttt                   <  1:2104512/151‑1 (MQ=255)
                                                                                                                                     ttGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAgg              >  1:154856/1‑151 (MQ=255)
                                                                                                                                     ttGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAgg              <  1:4467552/151‑1 (MQ=255)
                                                                                                                                      tGAACGTACGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGc             >  2:5190250/1‑151 (MQ=255)
                                                                                                                                            gaCGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAGCGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGCCTTtcc       <  1:4000655/150‑1 (MQ=255)
                                                                                                                                              cGGTAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGCCTTtcctc     <  1:486896/151‑1 (MQ=255)
                                                                                                                                                 tAGCTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGCCTTTCCTCCTg  >  2:1322258/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CAGGGCAACTTCAACGCCGCACTTCTCGCAGATTACGCCGCGGTGCTTGAGGCGCTTGTACTTGCCGCACAGGCACTCGTAGTCCTTGACTGGGCCAAAGATCTTGGCGCAGAACAGGCCGTCACGCTCAGGCTTGAACGTACGGTAGTTGATGGTTTCCGGCTTCTTAACTTCACCGAACGACCACGAACGGATCATTTCAGGCGACGCCAGACCGATGCGGATGGCGTCGAACTCTTCGACTTGACCCTGGTTTTTCAGCAAATTCAGTAGGTCTTTCAAGGCCTTTCCTCCTG  >  CP009974/1562690‑1562985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑