| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,629,612 | G→A | intergenic (+47/‑259) | rpsU → / → RPPX_07325 | 30S ribosomal protein S21/DNA primase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,629,612 | 0 | G | A | 98.9% | 983.3 / ‑5.4 | 274 | intergenic (+47/‑259) | rpsU/RPPX_07325 | 30S ribosomal protein S21/DNA primase |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base A (121/150); total (122/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 274 total aligned reads displayed.
GAGAAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGGGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACGAG > CP009974/1629464‑1629759 | gagaAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGc > 2:1414415/1‑151 (MQ=255)gagaAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGc < 1:113822/151‑1 (MQ=255)gagaAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGc < 1:2991041/151‑1 (MQ=255)gagaAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGc < 1:2856432/151‑1 (MQ=255) aaGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGAt > 1:10811/1‑151 (MQ=255) ccGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGc > 1:11826/1‑151 (MQ=255) ccGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGc > 2:479750/1‑151 (MQ=255) ccGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGc > 1:1623736/1‑151 (MQ=255) aCCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGt < 2:2407973/151‑1 (MQ=255) aCCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGt < 1:306674/151‑1 (MQ=255) cGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCCAGCGATGGCAGTgg > 2:3618401/1‑151 (MQ=255) gCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGt < 2:1718189/151‑1 (MQ=255) gagCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGt < 1:2803115/151‑1 (MQ=255) gCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGttt > 2:4911771/1‑151 (MQ=255) gTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCa > 1:1706779/1‑151 (MQ=255) aaGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCaaa > 1:3670231/1‑151 (MQ=255) aGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTCTCAAAc > 2:5098158/1‑151 (MQ=255) gcagcTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGagcag > 1:3289912/1‑151 (MQ=255) agcTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCagct > 1:3140732/1‑151 (MQ=255) gtgctgctgTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCagctag < 2:3368923/150‑1 (MQ=255) ctgctgctgTTAAGCGTCACGCTAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGGACTAATGCAGACGTGCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGGGCGATGGCAGTGGTCGTTTCAAACTTGAGCagctag < 2:4030964/151‑1 (MQ=255) ctgctgctgTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCagctag < 1:1869355/151‑1 (MQ=255) tgctgTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCa > 1:3801106/1‑151 (MQ=255) gctgTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAGAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCaa < 1:146504/151‑1 (MQ=255) tgTTAAGCGTCACGGCAAGAAAGTTCAGCACGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAgg < 2:3705318/151‑1 (MQ=255) tgTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAgg < 2:3713823/151‑1 (MQ=255) ttAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGcc < 1:2379449/151‑1 (MQ=255) ttAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGcc > 2:4379742/1‑151 (MQ=255) tAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGccc > 1:3254133/1‑151 (MQ=255) aaGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCACACTTGAGCAGCTAGCTCAAGGCCCt > 2:2291177/1‑151 (MQ=255) aaGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCt < 2:2654208/151‑1 (MQ=255) aGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTg < 2:4952009/151‑1 (MQ=255) aGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTg > 1:3507062/1‑151 (MQ=255) aGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGACGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTg < 2:1618361/151‑1 (MQ=255) gCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGc < 1:1939386/151‑1 (MQ=255) cGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGca < 1:615645/151‑1 (MQ=255) gTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGcac < 1:1359597/151‑1 (MQ=255) gTCACGCCAAGAAAGTTCAGCGCGAACAGCCCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGACAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGcac > 1:2730584/1‑151 (MQ=255) tCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGcaca < 1:887092/151‑1 (MQ=255) aCGACAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGTCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAg < 1:2389516/151‑1 (MQ=255) cGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGc > 2:2164933/1‑151 (MQ=255) ccAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCtt > 2:1460069/1‑151 (MQ=255) cAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTc < 1:4052819/151‑1 (MQ=255) aaaGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGc > 1:1026531/1‑151 (MQ=255) aaaGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGc > 2:2751273/1‑151 (MQ=255) aaGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCg > 1:4422867/1‑151 (MQ=255) aaGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGCGGTCGTTTCAAACTTGCGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCg > 2:3578647/1‑151 (MQ=255) gTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGaa < 2:2596130/151‑1 (MQ=255) gTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGaa > 1:4148258/1‑151 (MQ=255) cgcgAGCAGCGCCGCGCCGTTCGTCTGTACTAGTACAGACGTTCAACGCAGAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGcat < 2:5216005/151‑1 (MQ=255) cgAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGcatca > 1:4464544/1‑151 (MQ=255) gcaCAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCGTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGcatcat < 1:3661527/149‑1 (MQ=255) gAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGcatcat > 1:1994032/1‑151 (MQ=255) aaCAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATg < 1:987790/151‑1 (MQ=255) cAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGCCCCTGCACAAGCTTCATGCGAACTGCATCATggg > 1:2911220/1‑151 (MQ=255) ccgcgccgTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAAcc < 1:4789307/151‑1 (MQ=255) cgcgccgTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAAcct < 1:4929815/151‑1 (MQ=255) cgcgccgTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAAcct < 1:1285615/151‑1 (MQ=255) gcgccgTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAAcctg > 2:866401/1‑151 (MQ=255) cgTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAAcctgcctg > 2:5208118/1‑151 (MQ=255) ttCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGaa > 1:3491991/1‑151 (MQ=255) ttCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGaa > 1:4674143/1‑151 (MQ=255) ttCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGaa < 2:2860815/151‑1 (MQ=255) tCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGaaa > 2:389244/1‑151 (MQ=255) tCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGaaa > 1:3955656/1‑151 (MQ=255) cGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAAc > 1:5038179/1‑151 (MQ=255) gTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACg < 2:1623736/151‑1 (MQ=255) tGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCa > 1:851612/1‑151 (MQ=255) tGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCa < 1:4800919/151‑1 (MQ=255) tGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGCGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACAGCATCATGGGCAACCTGCCGGAAACGACa > 2:5100297/1‑151 (MQ=255) cTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGc > 1:922172/1‑151 (MQ=255) tAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCt > 2:3078700/1‑151 (MQ=255) aCAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGtc < 1:4344017/151‑1 (MQ=255) cAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGtcc > 2:1348250/1‑151 (MQ=255) cAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGc < 2:1201916/151‑1 (MQ=255) aaCGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCt > 1:2457000/1‑151 (MQ=255) cGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGt < 1:5146629/151‑1 (MQ=255) aaGCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGa < 2:4452123/151‑1 (MQ=255) gCTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGAcc < 2:1891572/151‑1 (MQ=255) cTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCa > 1:1069448/1‑151 (MQ=255) cTTCTGCCCTGCCCGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCa < 2:414397/151‑1 (MQ=255) gccctgcccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGt < 1:5208118/151‑1 (MQ=255) tgcccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCAc < 2:4326293/151‑1 (MQ=255) gcccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACg > 2:4550338/1‑151 (MQ=255) cccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGt < 1:1021117/151‑1 (MQ=255) cccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGt < 1:604157/151‑1 (MQ=255) ccGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTc < 2:1992964/151‑1 (MQ=255) cGGCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTcc < 2:5051628/151‑1 (MQ=255) gCTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGa > 2:3465108/1‑151 (MQ=255) cTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGAc > 2:4686034/1‑151 (MQ=255) cTAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGAc < 2:68923/151‑1 (MQ=255) tAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACt > 1:3871499/1‑151 (MQ=255) tAACCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACt < 2:288923/151‑1 (MQ=255) aaCCCCCGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTg > 2:72771/1‑151 (MQ=255) cccccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGAc < 1:3397995/151‑1 (MQ=255) ccccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACg < 1:3911799/151‑1 (MQ=255) ccccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACg < 2:3152666/151‑1 (MQ=255) cccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACGa < 1:2090658/151‑1 (MQ=255) ccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACTTGCACGTCCGACTGACGAg > 2:2482423/1‑151 (MQ=255) ccGAGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACGAg < 2:1076184/151‑1 (MQ=255) | GAGAAGCCGACCGCAGAGCGTAAGCGCAAAGCAGCTGCTGCTGTTAAGCGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAATACAGACGTTCAACGCAAAGCTTCTGCCCTGCCCGGCTAACCCCCGGGCGATGGCAGTGGTCGTTTCAAACTTGAGCAGCTAGCTCAAGGCCCTGCACAAGCTTCATGCGAACTGCATCATGGGCAACCTGCCTGAAACGTCAGAGCTGGTCCTCCTTAGCTGTATGACCAGACGTGCACGTCCGACTGACGAG > CP009974/1629464‑1629759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |